Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>NtERF2   ------>NtERF2  --------->ANAC46  --------->bZIP60(1)  <---------bZIP60(1) ----->NtERF2 ------->DEAR3(1) ------>ATERF1(1)                                                                          --------->ZAT2 -------------------WRI1                                                                   --------->At4g35610 ------>SPL7                                                                               <---------At4g35610 ----NtERF2                                                                             <---------ZAT2 -->NtERF2  --------->YAB1                                                              --------->ZAT2 ------ATERF1(1)                                                                        <---------At4g35610 ---->DEAR3(1)                         --------->ANAC58                                --------->ANAC46 -NtERF2    <---------ICU4             --------->ANAC58                            --------->ARR14(2) --->ATERF1(1)                   ------>NtERF2                                     <---------ARR14(2) --->ORA47(2)                    ----------->RAV1(1)                             --------->LBD16 ---- --->DEAR3(2)                  --------->ZAT18         <---------ARR11(3)       <---------HSFC1(1) --->RAP2.3(1)          <------ZmHOX2a(1)            --------->ANAC58           --------->HSFB2a(2) ---ATERF1(1) <---------YAB1  ------>NtERF2 --------->ICU4--------->GLK1(2)     <---------HSFB2a(2) ->DEAR3(1)--------->ICU4 <---------bZIP60(2)        --------->ANAC58        --------->GLK1(2)   <--- >ATERF1(1)<---------ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <------ZmHOX2a(1)--------->At4g35610   gacgacgacaccaatgatgacagtgaggacgaggccaccagaagcaatgctgagcaagaaattcttgagggaaggagagattccagaaccagcagcttca  2588000                                            --------->MYB52(1)                                           --------->CCA1(2)                                          --------->ARR14(2)                                          <---------ARR14(2)                                        ----------->ARR10                                       <------NtERF2                                      --------->LBD16                                     <---------ANAC46                                     <------NtERF2<---------WRKY45                                    --------->LBD16                                    --------->At4g35610                                    ------>NtERF2 <---------WRKY38(1)                                    <---------LBD16---------->DOF2           --------->YAB1          --------->DEAR3(1)        --------->ARR14(2)        --------->ATERF1(1)      --------->LBD16            <---------At4g35610     --------->HSFB2a(2)         <---------ATERF1(1)                                              ---     --------->ANAC46            --------->ZAT2 <-----------HVH21                              ------     <---------HSFB2a(2)         --------->At4g35610<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <-----    <---------LBD16             --------->DEAR3(1)<---------WRKY12                           <------- ----->At4g35610              --------->At4g35610--------->WRKY18(1)                         -------- ------At4g35610           <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)               <----------DOF2  --------->ZAT14   gctatctccggaatcaccatcgaagcagtaagagcagccgcggagataccggtcaaagccttgtccatcttgagggccttaacttgaagcctctgtgctc  2588100                                                                                           --------->bZIP60(1)                                                                                           <---------bZIP60(2)             ------->GAMYB<---------MYB46(3)           <----------ID1            ----------->HVH21 <-             --------->AtMYB61                    ---------->DOF2              <---------ANAC46   <--       <xxxxxxxxxxxxxxxxsmallRNA(le3)            <------ZmHOX2a(1)             <---------ANAC58  ---- ------>NtERF2            <------MYB46(1)      <---------TOE1(3)     ----------->GT1    ----------->HVH21 --->NtERF2 --------->MYB46(3)                 <---------TOE2(3) --------->ARR14(2)     <---------ATHB12 --->At4g35610            <------MYB83     <---------ANAC46      <---------ARR14(2)  <xxxxxxxxxxxxxxx ----At4g35610---------->DOF2              <---------ANAC58 --------->MYB52(1) <---------ANAC58 <---- --ZAT14   --------->ANAC58                <---------ANAC58<---------SPL7   --------->ALFIN1   <----- ->ZAT14   --------->ANAC58     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------ANAC46 <---------bZIP60(1)   tgcctccagttgcaaccaaagccttggatggtttcagaggtaatggcttaaggaaaggagacgaacgggtctggttaagtggtgtgaccaatgacatcgc  2588200      --------->ANAC58      --------->ANAC46      --------->ANAC58   <----------DOF2                 --------->GLK1(2) --------AtMYB61         <---------DAG2                 <---------GLK1(2) ----NtERF2           ------>ZmHOX2a(2)         <----------DOF2 ----->LBD16          <-----------------AGL3   ------>ZmHOX2a(2) xsmallRNA(se3)      --------->GLK1(1)       <---------ARR11(3) -----ANAC46         <------ZmHOX2a(2)       --------->ARR11(3)                   <---------ANAC46 ----LBD16 <---------CCA1(2)              <---------WOX13(1)  <----------DOF2    --------->At4g35610   ggaggtagaagccatctcttccgatctctttttggtctctctagattgatctttctgagattctctttcgaaatgtgtgaagttgctgagaagaatggta  2588300                                                                      --------->At4g35610                                                                    <---------GLK1(2)                                                                   <---------HSFC1(2)                                                                   --------->HSFC1(2)                                                                   <------NtERF2                                                            <---------TGA1a                                                            <---------bZIP60(2)                                                            --------->O2   <---------At4g35610                                                            <---------O2   --------->At4g35610                                                            --------->TGA1a--------->ZAT2                                                            <---------ANAC58                                                            <---------ANAC58                                                            <---------ANAC55(2)                                                            --------->ANAC55(2)                                                            <---------ANAC55(1)   <---------ICU4                                                       *TSS <---------ANAC46      --------->MYB52(1)                    --------->MYB52(2)                ------->TEIL --------->HSFB2a(1)                  <--------P                       <---------YAB1  <---------At4g35610               <---------TOE1(3)                 --------->CCA1(2) --------->At4g35610    <----------               <---------TOE2(3)                <---------ARR11(3) <---------ZAT2------>ZmHOX2a(1)           --------->CCA1(2)                    --------->ARR11(3) <---------HSFB2a(1)   --------->ATHB12   tttgagaagagagatttgaggttagtgatgttcagagattggagatgtgagatatgaatcttacgtggcagcttctgagcttcctaatggctcattggat  2588400            --------->ATHB12             ----------->GT1     --------->DOF5.7(2)                 <---------ANAC58     <---------MYB52(1)                  <---------ANAC58    --------->TOE2(3)              <------------CBF    --------------->AtSPL3    --------->TOE1(3)             <----------DOF2     <---------ARR11(3)                  <---------MYB59  <---------TOE2(3)           <--------P <---------ANAC46                                 ------->GAMYB  <---------TOE1(3)          <-------GAMYB ----------->GT1 --------->SPL7       <---------WOX13(1) --------->MYB52(1)         <---------MYB46(3)       --------->CCA1(1)       <---------ATHB51 <---------DOF5.7(2)       <---------AtMYB61         --------->RVE1(1)       <---------YAB1 --CBF <---------ARR11(3)<-----------RAV1(1)     --------->AHL20(2) <---------LBD16    --------->MYB52(1)   agataacgttatcttcatttgcgattactgtggttgctattgggcgtgaaaaaaaatatcgtacttcgagtccggttcgataattgacataaccgaattg  2588500                                                                                                  ---                                                              ----------->GT1            <---------ICU4                                                      --------->TOE1(3)                  --------->YAB1                                                      --------->TOE2(3)  ---------->DOF2--------->ICU4   <-------TEIL                          <---------CCA1(2) XXXXXXXXXXXXXXXXXXXX>MIR778--------->YAB1<   agaggtgcatagtttcggttcgattctaacaattttggttctcaaatctctcagacccttaaattggtttatatacaaagtgtttgaacaataatcagtt  2588600                                         --------->LBD16                                        --------->ANAC46                                       --------->DEAR3(1)                                     ------>MYB83                            <-----------GT1                        <---------AHL20(2)                        --------->AHL20(1)                        <---------AHL20(1)       --------->DOF5.7(2)                        --------->AHL20(2)      --------->TOE2(3)                                 --- --------->AHL20(2)   ------->TEIL   ------>MYB46(1)                                         -------- --------->YAB1    <---------YAB1    -------->P --------->TOE1(3)                      --------->DAG2 ------>YAB1    <---------ATHB51    <---------ALFIN1                       <----------DOF2   <------- ---------YAB1  --------->ICU4     --------->MYB46(3)            ----------->RAV1(1)  ---------->DOF2   ttataatatagggctcaaattatgaatttattacaaacccacccccaaaacgttaacacatcgtttgcaacatttgcctttgaaattgaaaagtgatcag  2588700                                                                                                    <                                                              <---------ANAC58                    <--           <---------YAB1                                     <---------ANAC58                   <---         --------->YAB1                                       <---------ANAC46                   ----        <---------YAB1                                  ------>MYB83                             ----    --------->YAB1                                      ------>MYB46(1)                          <--- ------>TOE2(3)           ---------->DOF2               -------->P                            ------>ZmHOX2a(1) ->At4g35610             <------ZmHOX2a(1)    <---------TOE2(3)       --------->ZAT18 <---------ALFIN1 --At4g35610    ----------------->AGL1        <---------TOE1(3)<----------DOF2      >>>>>>>>>>>>>>>>>LFY   cctcagtaatattatgatacagaaacaggaaaggcttcacatttttctaaggttatccaaccttgcttgaaggtcactatctatacctccactgtcctca  2588800              --------------->AtSPL8              --------->RAP2.6(2)            --------->ZAT2                --------->SPL7          <-----------RAV1(2)           --------->ARR14(2)       <------NtERF2                    <---------ARR14(2)      <---------ATERF1(1)             --------->LBD16                    --------->At4g35610     <---------DEAR3(1)               <---------MYB46(3)                 <---------At4g35610   <---------MYB52(1)                <---------ANAC46                    --------->ZAT2   <-----------HVH21                 <---------ANAC58                    ----------->RAV1(2)   <----- ---------LBD16                      <---------ANAC58  <-----------RAV1(2)                     <----- -------ARR14(2)                 --------->At4g35610 ==============================RAV        ------- ------ZAT2 <---------At4g35610  <---------At4g35610 ================================RAV     <------- ----->ZAT2 <---------ZAT2      <-----------RAV1(1)  ----------->RAV1(1) <---------ZAT2      <------- ----->At4g35610              <----------DOF2 ----------->HVH21        --------->MYB46(3)------->TEIL ------At4g35610    <---------ALFIN1<---------LBD16--------->ZAT18     <-----------RAV1(2)  ---------   gctccggtcgcctcagcttgtaccaccttgttctttgctgcgggtactgcgaccgcaccagatggagcattcaccagctgaaacatagatgaatcggtca  2588900  Previous    Next  AGI:  At2g06520.1    Description:  PSBX (photosystem II subunit X). similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96439.1); similar to unknown [Populus trichocarpa] (GB:ABK94669.1); contains InterPro domain Photosystem II protein PsbX; (InterPro:IPR009518) Range:  from: 2587726    to: 2588355    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g06530.1    Description:  VPS2.1. similar to VPS2.3 [Arabidopsis thaliana] (TAIR:AT1G03950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80030.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 2588542    to: 2590450    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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