Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------------AGL15                                               <---------YAB1                                              <---------AHL20(2)     <---------AHL20(2)                       --------->AHL20(2)    --------->AHL20(2)                        --------->AHL20(1)    <---------AHL20(1)                       --------->YAB1    <---------AHL20(2)            <------MYB46(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->AHL20(2)    <---------YAB1        --------->ICU4         --------->YAB1 ---------AHL20(2)   <---------TOE2(3) <---------TOE2(3)          --------->ICU4 ---------YAB1   <----------DOF2  ----------->GT1     ----------->GT1 -----AHL20(2)--------->ARR11(3)  <------MYB83<---------AHL20(1)  <---------ATHB12 ---->AHL20(2)<---------ARR11(3) --------->MYB59     --------->MYB59             <----------DOF2-----   atataattaattttgaaatcttttatgttaagagtttggttaagaaattataattttggtaatatgcaatggtgagttcttagctttgagttcttaagaa  2584600                                                  <---------ICU4                                                  --------->YAB1                                                  -------->HAHB4                 --------->AHL20(2)              --------->ICU4               --------->YAB1                    <---------YAB1           --------->AHL20(2)                  --------->YAB1       --------->AHL20(2)                      <---------ICU4                                      --      --------->AHL20(1)                    --------->YAB1 --------->TOE2(3)                     <---      --------->ARR11(3)                 <----------DOF2----------->RAV1(1)                  <-------      <---------ARR11(3)    <---------AHL20(2) -------->HAHB4                                <-------      <---------AHL20(1)   <---------AHL20(2) <---------ATHB51                               --------   --------->AHL20(2)      --------->AHL20(2) --------->ICU4 --------->AHL20(2)       ----------->GT1 ------>GT1<---------AHL20(2)      ---------->DOF2--------->ATHB12            <-----------GT1--------   gaaaaaaaaatatttaaaaataaaaacattttaattttaaagactttaataatgattacaacataaattttgaaaacatttaacaatgtagttaatattt  2584700          <---------ATHB12      --------->MYB46(3)     --------->ANAC58     --------->ANAC58                                                                            ----     --------->ANAC46                                                                            <--- --------->ANAC46       ------->MYC3                                                             <--- ------->ZAT6           <-------MYC3                                                            ----- --------GT1           <---------O2           <---------ICU4                            --------->AHL20(2) --AHL20(2)            --------->O2       <---------AHL20(2)                ---------->DOF2   ------- --AHL20(1)       ----------->HVH21       --------->AHL20(2)         <---------ICU4     --------->YAB1 ->AHL20(1)--------->YAB1                --------->AHL20(2)         <-----------ARR10--------->WOX13(1) ->AHL20(2)--------->AHL20(2)   <---------ARR11(3)                  --------->ICU4 <---------ATHB12   tacactcacccaataaaaacttgacacatgtctagctcttagatttaatttttgctcttatataagagcaattcttaccaaagaaatcaattaaaacatt  2584800                                                                                         <---------AHL20(2)                                                --------->HSFB2a(1)                     <---------AHL20(2)                                              <------ZmHOX2a(1)                         --------->AHL20(2)                      --------->ARR11(3)    <---------TOE2(3)                       xxxxxxxxxxxxxxxxx ----->AHL20(2)  --------->TOE1(2)         --------->YAB1                         --------->HSFC1(1) ------AHL20(2)  --------->TOE2(2)        <---------ATHB12                        <---------HSFB2a(2) ------AHL20(1) --------->YAB1   <---------At4g35610                              --------->HSFB2a(2) ---->AHL20(2) <---------TOE2(3) --------->At4g35610                          <----------DOF2   ----- -->TOE2(3)    <---------YAB1    --------->ZAT2 <---------HSFB2a(1)   <----------DOF2 --------->GLK1(2)   aaatttctaatctaattaacataagaactagtctgagcttaccaataaggatgttctaaggggttctatagtctttctctctttcgagaatttaatccaa  2584900                     --------->At5g28300           <---------ANAC58           <---------ANAC55(2)                           <---------AHL20(2)           <---------ANAC58                              --------->AHL20(2)           <---------ANAC55(1)                           <---------AHL20(1)           --------->ANAC55(2)                       ------->GAMYB         --------->ARR11(3)   ------------>AtMYB77                            -------->P      <------------CBF xxxxx>smallRNA(si3)----------->GT1               --------->WOX13(1) ----------->GT1          <------ ---->ANAC46      <---------ANAC46    --------->ZAT6--------->MYB46(3)     <---------ARR11(3) <------   gtcgttcacagttacgagtcgagggtaaattagtagttttacactgaaatatcaaccaaaaaatttcaaaattgaaaaatctccataaactgttttgcga  2585000                                                                              --------->AtMYB61                                                                           <---------ALFIN1                                                                           --------->AtMYB61                                                                        <---------ALFIN1                                                                        --------->DEAR3(1)                                                                     <---------ALFIN1                                                                     --------->AtMYB61                         --------->ANAC46                       <-----------HVH21--------->DEAR3(1)                         --------->LBD16                       ------->GAMYB  <---------ALFIN1                         --------->ANAC58             <---------HSFB2a(1)  --------->DEAR3(1)                         --------->ANAC58           <---------GLK1(2)--------->ANAC46   <-----------HVH21                  <---------GLK1(2)                 --------->ARR14(2)  --------->AtMYB61                <---------TOE1(3)                   <---------ARR14(2) --------->MYB46(3)    <-------               <-----------GT1        ---------->DOF2 --------->HSFB2a(1) --------->MYB46(3)<--------        <---------ARR11(3)          --------->At4g35610       --------->ZAT6 <---------MYB55(2)        --------->ARR11(3)          <---------At4g35610     --------->MYB52(1)--------->DEAR3(1) ---ANAC58     *TSS     <---------LBD16            <------ZmHOX2a(1)--------->MYB46(3)  <--------ZAP1 ---ANAC58 <----------DOF2--------->LBD16  <----------DOF2 ------>ZmHOX2a(1) --------->MYB46(3)   cccaaaacaacatcttttaagcttctcccgcaaaattcagcaaagctttcggaggaatctcctaacagtcaccaccaccaccaccgtctaggtcaaatct  2585100                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                          <---------ARR14(2)                                                                                          <---------ARR11(3)                                                                                          --------->ARR14(2)                                                                                        <------NtERF2                                                                                       ------>NtERF2                                                                                       --------->LBD16                                                                                      <---------ANAC46        --------->ANAC58                        --------->LBD16                      <---------LBD16        --------->ANAC58                     ------>ZmHOX2a(1)                       <------NtERF2      <---------ALFIN1                    ------>ZmHOX2a(1)                         ------>NtERF2     ------>ZmHOX2a(1)             ------>ZmHOX2a(1) <-----------GT1               --------->ANAC46 ----ARR10                        <---------MYB59 <----------DOF2                <---------ANAC58 -CCA1(2)                    --------->KAN4(2)<---------LBD16 <-----------GT1    <---------ANAC58   cgtcttcctcacgctctatttctccatagaatatttcctaactcctcctccggtttatcgattttttcaatttttctagggtttcgcgccgggatctaaa  2585200                                                          <---------O2                                                          <---------TGA1a                                                          --------->TGA1a                                                          --------->O2                                                          ----------->GT1                                                        ------>NtERF2                                                       ----------->HVH21                                                       --------->DEAR3(1)                                                       <---------DEAR3(1)                                                      --------->ATERF1(1)                                                      --------->RAP2.3(1)                                                      <------NtERF2                                                     ------>NtERF2                                                     <---------ATERF1(1)                                                    <---------ANAC46                                                  --------->MYB52(1)                                      <---------At5g28300<------NtERF2              <---------MYB52(1)      <---------LBD16<---------RAP2.3(1)             --------->LBD16         --------->YAB1--------->RAP2.6(3)            <---------DREB2C(2)     <---------ATHB12<---------RAP2.3(3)            <---------ANAC46      --------->WOX13(1)<---------DEAR3(1)                              -            <---------DEAR3(1) --------->ANAC58  ----------->HVH21                     <---------HSFB2a(2)       --------->YAB1          --------->ANAC46  ----------->TGA1                      --------->HSFB2a(2)       <---------ICU4          --------->ANAC58<---------ANAC55(2)            <-----------GT1       -      <---------ATHB12        --------->SPL7   --------->ANAC55(2)         <---------MYB46(3)      <- --------->YAB1             <---------SPL7    <-------TEIL<---------ANAC46<---------MYB52(1)  -------   aaatcacaatcatgccggtgagtttgactccgaacgcaatcacggcgatacatgacggcgacgtgaatttgaagccgttgttacaggttttagaaatcaa  2585300                                                                                                    -                                                                                                    =                                                                                          --------->At4g35610                                                                                          <---------At4g35610                                                    <---------At4g35610                <-------TEIL =                                                  <-----------RAV1(2)                 <---------ARR14(2)     <------ZmHOX2a(1)                     --------->TOE2(3)                 <---------AtMYB61   ---- -------->YAB1              <------ZmHOX2a(1)<---------ICU4     <---------At4g35610   --------->ARR14(2) -------->ATHB12         <-----------RAV1(2)------>ZmHOX2a(1)   --------->At4g35610<------NtERF2<---- --------YAB1         --------->ANAC58  <---------ARR14(2)  --------->ARR14(2)    <------NtERF2 ----- -->YAB1              --------->ANAC58  --------->ARR14(2)  <---------ARR14(2)    <---------LBD16----   aatgataggaagaagtcaagagagaagccaggagaggtatcgtttcctcatttcagatggtgtttctgctcaacatgctatggtcgcggttcagcttaat  2585400                                         <---------At4g35610                                         --------->At4g35610                                         --------->ZAT2                                         <---------ZAT2                                     <-----------HVH21                             --------->ARR14(2)                             --------->GLK1(2)       --------->TGA1a       <---------ARR14(2)                                --------->ANAC58       --------->ANAC58      <---------ARR11(3)                                --------->ANAC58       ============================bZIP_DOF --------->ATHB12                <------NtERF2       --------->ANAC58      --------->ARR11(3)                            --------->ANAC58 ----->ZmHOX2a(2)           <------ZmHOX2a(1)                              --------->RAP2.6(2) ==================================HOX2a_HOX2a<---------WOX13(1)           --------->ANAC58 ===================HOX2a_HOX2a------>ZmHOX2a(2)                     ---------->DOF2 <---------ICU4 ----->ATHB12           ---------->DOF2<-----------RAV1(2)           <---------DOF5.7(2) -----YAB1   =========================HOX2a_HOX2a                  --------->DOF5.7(2) <-----------GT1 ---->ICU4   <------ZmHOX2a(1)<------ZmHOX2a(2)                   --------->TOE2(3) --------->ICU4 ---->HAHB4  ========================HOX2a_HOX2a--------->ATHB12 <---------ANAC46--------->AHL20(2)   gatcgagtcaagtcaggacaatttgagaaaggatctatcgttcagctgattgattacatttgtagcgacgttaaaggccgcaagtaatttttccattttc  2585500  Previous    Next  AGI:  At2g06510.1    Description:  replication protein, putative. similar to DNA binding / nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G19130.1); similar to hypothetical protein OsI_008965 [Oryza sativa (indica cultivar-group)] (GB:EAY87732.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65276.1); similar to RPA 70kDa subunit [Pisum sativum] (GB:AAQ23194.1); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain N Range:  from: 2585015    to: 2587683    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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