Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------ARR11(3) <---------TOE2(3)                    --------->ARR11(3)         <---------REM1(1) <---------TOE1(3)             ---------->DOF2                 <-------GAMYB --------->DOF2            --------->TOE1(3)                  <-----------RAV1(1)     ---------->ID1 --TOE2(3)                 --------->TOE2(3)          <-----------GT1                <-----------GT1   tttaaagtttgatatttgggtttcaaaaaccttcaaagaagatttcaaatgccgattaacttctctgttgtagcaatttcaaagttttttcgttttgaaa  2549700                                                    --------->ANAC55(2)                                                 ------>ZmHOX2a(1)                                               ------>ZmHOX2a(2)                                             <---------GLK1(2)                                             --------->ARR14(2)                     <------MYB46(1)                  <---------YAB1             <---------ARR11(3)                     <------MYB83               <XXXXXXXXXXXXXXXXXXXXMIR2112-5P<------ZmHOX2a(2)                 <---------ARR14(2)              <---------WOX13(1)             --------->ARR11(3)                 --------->ARR14(2)     --------->At5g28300                     <---------ARR14(2)            <---------ANAC46    ------    ----------->GT1--------->ATHB12          --------->AGP1               --------->ATHB12  ---------   --------->ZAT6<---------TOE2(3)     <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----------->RAV1(1)               <---------AHL20(2)     <---------AHL20(2)<---------WOX13(1)-------   cttcaacagtaaatagattgatgtttgggtttgtgttttaatttatagatcctcacttaatttatgggttaccagttgattggatttggtttggaaaagg  2549800                                  ---------->DOF2                             <----------DOF2                    --------->At4g35610                  <---------DEAR3(1)      <-----------GT1<---------DEAR3(1)   <---------AHL20(2)                         <------ZmHOX2a(1) ----->GT1       <---------At4g35610      --------->AHL20(2)                     ---------->DOF2  --- ->DOF2          --------->At4g35610  ----------->GT1                --------->MYB52(1)           <-- -->DAG2 xxxxxxxxxxxxxxxx>smallRNA(s) <------ZmHOX2a(1)      ----------->GT1<----------DOF2 xxxxxxxxx   tttttttgtttctattttcagcggctgtgttctttgaaaaggattaaaattttgtttttggaatggtttcaaaacggtctttaaaaaggattatggagta  2549900                                                                                       <-----------GT1                                                                                   <----------DOF2                                                                                --------->ARR11(3) ------>ICU4                                    <----------DOF2                 <---------ARR11(3) -------YAB1          ---------->DOF2       --------->ICU4                   <---------TOE2(3)     -- xxxxxxxxxxxxxx>smallRNA(se3)        <---------ANAC46     ----------->GT1   ---------->DOF2 <--------   atgactgtgttttacaagggtttttaaagtcttaaaacgacttgtaatgactttgaaaaatggttttacaagggtttttaaagttctttaaacgacttgt  2550000                                                                                    <---------AHL20(2)                                                                                   <---------AHL20(1)                                  --------->MYB52(1)                               <---------AHL20(2)     <---------YAB1           <-------TEIL                  <-----------GT1        --------->AHL20(2) ------->ICU4         <----------ID1                   <-----------TBP             --------->AHL20(1) -ANAC46   <---------YAB1----------->TBP           ----------->GT1          ----------->GT1       <--   aatgactatgtttatgtttcgaaaactacaaatgcataatggatttacaaaaatggtttttaaaaccatttcaaaactgtgttaatttaatgactgtgtt  2550100                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                         <------NtERF2          <---------TOE1(3)                                              --------->At4g35610          <---------TOE2(3)                                              <---------At4g35610     --------->AHL20(2)                                          ------>MYB83     <---------AHL20(2)              --------->GLK1(2)           -------->P       xxxxxxxxxxxxxxxxxxx    --------->AHL20(2)   <---------YAB1                          ------>MYB46(1)----------->GT1  ------->TEIL        *TSS<---------------AtSPL8           xxxxxxxxxxxxxxxx>smallRNA(i) -------TOE2(3)      <---------------------WRI1     ---------->DOF2  --------->ANAC46   aatgtatttaataaggttttgagaaatatgagtacaaagaaactgttcttccctaaaagactgttccaaccaggcagcgaagtagataatattacaaggg  2550200                                                                                                    <                                           <----------DOF2                     <---------GLK1(2)    -         --------->YAB1               ---------->DOF2              --------->TOE2(3)       ------>ZmHOX2a(1)        <-------TEIL                 <------ZmHOX2a(1)   <---------ZAT6      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------->DOF2--------->YAB1     >>>>>>>GRF7---------->DOF2   <---------ALFIN1         ------------ xxx>smallRNA(fl3)              <-----------HVH21   xxxxxxxxxxxxxxxx>smallRNA(i)         <-----------   tatcaaagcattcatctttcaaaattgtctcgactgtcaggaaagctttagagccgatagagttcaacacattaatggacacattcttgggtcctatagt  2550300                                                                           ----------->TGA1                                           <---------ICU4                --------->YAB1                                          <---------YAB1               ------>MYB46(1)                                        --------->YAB1                 ------>MYB83    --------->At4g35610          <---------CCA1(2)                   ------->GAMYB ---------GLK1(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----------->RAV1(1)  <xxxxxxxxx -------->ARR14(2)          --------->ANAC58                        --------->MYB46(3)  <---------ANAC46 ----->AGL1                 --------->ANAC46                       -------->P        <---------TOE2(3) ------AGL1   ------->TEIL  --------->ANAC58         --------->LBD16<---------MYB55(2)xxxxxxxxxxxxxxx   ggaattcgctgaaatggacttagcattttcaagccatatcgttcatcatttactccagagaagaatactaaccaacaatgacgaattgtggtttgtattt  2550400               --------->GLK1(2)              <---------GLK1(2)                                          --------->At4g35610     ------->TEIL                             <------ZmHOX2a(1)       <------ZmHOX2a(1) xxxxxxxxxxxxxxsmallRNA(i2)        --------->YAB1                  <-----------RAV1(2)             -- xxxxxxxx>smallRNA(si3)           <---------YAB1       <---------ATHB12  <---------At4g35610---------   gctgatcaacctatgcgattctccctgagagagtttatcataacaacaggacttccaatggatgatgcatcaggaagcagtccaaatgtgaagagaaaga  2550500            <---------MYB46(3)                                                           ------>ZmHOX2a(2)            ----------->GT1    <----------DOF2                                          <------ZmHOX2a(2)           <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     --------->ARR11(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <---------AGP1     --------->DAG2  <---------ARR11(3)                  <---------ANAC46              <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         ---------->DOF2              <----------DOF2    ---------->DOF2  --------->ARR11(3)      ----------->GT1        --------->TOE2(3)  --------->AGP1 -------->DOF2   ---------->DOF2           --------->At4g35610   <-----------GT1      <---------CCA1(2) ->DOF2 --------->ALFIN1  --------->YAB1---------->DOF2  --------->ALFIN1      <---------DAG2   agaaagaaaagtggtggataaaagataatcagactttgaagggaaagcagaaaaaagatgtgtggattaacctcgaaatgacttttttagatcttacata  2550600  Previous    Next  AGI:  At2g06440.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 2550122    to: 2554727    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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