Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ------>MYB46(1)      <---------ALFIN1     --------->MYB46(3)    <---------At5g28300     ------>ZmHOX2a(1)   <-----------GT1          ==============================HOX2a_HOX2a ----------DOF2        <---------GLK1(1)                         <------ZmHOX2a(2)             ------ ---------DAG2         --------->GLK1(1)            --------->YAB1------>ZmHOX2a(2)     --------->ANAC58 --->MYB83           <---------ICU4                <------ZmHOX2a(2)            ----------------->AGL1 --->MYB46(1)        --------->ATHB12              <---------ATHB12     <-----------HVH21      ------ -----MYB111(1)     --------->ICU4           <-----------GT1    --------->ARR14(2)      --------->ANAC58 -----MYB59       --------->YAB1        ---------->DOF2         <---------ARR14(2)      --------->ANAC46 -ETT(1)------>MYB83<---------YAB1   --------->TOE2(3)          ------->TEIL  xxxxxxxxxxxxxxxxxxxxxxx   tacttttaccacccttcttctcatgatttcctataatttcattaaagtcaccgatcataaaccatggatccgagcgtcaaatgccaatacaagtcaaacg  2527400                               --------->GLK1(1)                              ------->TEIL                              <---------ARR11(1)                              <---------ARR14(2)                              <-----------ARR10                              --------->ARR14(2)                              --------->GLK1(2)                             <---------CCA1(2)                             <---------ARR14(1)                             <---------GLK1(2)                           <---------MYB59       <---------YAB1                         --------->MYB52(1)     --------->AHL20(2)      --------->YAB1 --->ANAC58            --------->MYB46(3)      --------->AHL20(2)       <--------ATHB1 --->ANAC58         <---------ZAT14            <---------AHL20(2)      <---------ATHB12           --- >smallRNA(se3)     --------->ZAT14           --------->AHL20(2)       <---------ATHB51          <---   ctcccaaactaattctcggtactgaactaccgaatctccatatacaaaattaatataaactcggtttccatcaataatagtttcaatatcaagatgccga  2527500                                                               <------NtERF2                          --------->GLK1(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------->LBD16                --------->AtMYB61                            ----                     ----------->GT1               --------->ZAT18                         --------->YAB1                   <---------LBD16              --------->ANAC58   <---------ATHB12     --------->GLK1(1)                 --------->MYB52(1)             --------->ANAC58 --------->WOX13(1)     <---------GLK1(1) ------>ZAT6     <-----------GT1         --------->MYB52(1)   ------>NtERF2  <---------------AGL15 ---ZmHOX2a(2)--------->TOE2(3)       <---------ANAC55(2) <-----------RAV1(1)--------------->AGL15 --   tcactaacaaaaacaaacttaaccggataatctttcgaatacataagggcaagaccactactggtgccaatcggttcaactatttgaaggaaatcaaaac  2527600                              --------->ATHB12                             <---------YAB1                            <-------MYC3                            ------->MYC3                                                       <-----                          ------->TEIL                                                         <-----                         <---------ANAC58                                                ------>ZmHOX2a(1)             <---------ARR14(2) <---------WOX13(1)                              <---------ALFIN1 ----->TOE2(3)           <---------ANAC58                               <-------TEIL     ============ -------->DOF2          <-------TEIL          <---------YAB1       <---------ANAC46      ============   ctaaagacacttgcatattttgtagatgcatgtgattgctcttggtttctgataaaacaaacaaacatggggagtacattcgacacatctcctccagtcg  2527700                    <---------ALFIN1                 --------->MYB46(3)             --------->At4g35610             <---------At4g35610          --------->ARR14(1)          --------->CCA1(2)          <------ZmHOX2a(2)         --------->ARR11(3)         <---------ARR14(2)         --------->ARR14(2)         <---------ARR11(3)         --------->ARR14(3)         <---------ARR14(3)         <---------AGP1                                 --------->MYB52(2)         --------->AGP1                               <---------MYB52(1)            <---------SPL7         <-----------ARR10                  --------->GLK1(2)                       --------->ZAT14       ----------->ARR10 ----------->HVH21 <---------ARR14(2)                       <---------ZAT14       <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ARR11(3)         ----------->GT1     -----------   ----------->GT1<---------ALFIN1         <---------GLK1(2)  --------->LBD16--------->ANAC58 ----ETT(2)------>ZmHOX2a(2)               --------->ARR14(2)<---------HSFB2a(2) ------>NtERF2 ----WRKY38(1) --------->PCF2            ----------->ARR10   <---------ANAC46--------->ANAC58       - ================HOX2a_HOX2a             <---------TOE2(3)   --------->HSFB2a(2)<---------ALFIN1  --- =================HOX2a_HOX2a       --------->AtLEC2  *TSS  <---------LBD16  --------->ANAC46<-------   acgagaggtaagatctgctcccaccccttgacaattccatgctaagattctcatgtgttagttccggagggagagtcaaaccccaccgtactaacaattg  2527800                                                                                                 ----                                                                                               ------            <---------YAB1                                                                --------->KAN4(2)        --------->AHL20(1)                                                               --------->HSFB2a(1)        <---------AHL20(2)                                                               <---------HSFC1(2)        <---------AHL20(1)                                                               --------->HSFC1(2)        --------->AHL20(2)                            --------->ARR11(3)                 <---------HSFB2a(1)       --------->YAB1                          <------------CBF                          <---------KAN4(1)       <---------ICU4                         --------->ATHB12                          <---------KAN4(2)      <---------YAB1            ------------>CBF      <---------ARR11(3)                ------->TEIL ----------->GT1               --------->TOE2(3)      <---------ARR14(2)              ------->GAMYB ->CBF--------->ICU4     <---------ICU4      <---------YAB1                          <---------MYB52(2) -------->DAG2        --------->YAB1         --------->ICU4                          --------->MYB46(3) ------->DOF2<---------ICU4   --------->At4g35610     --------->ARR14(2)  <----------DOF2--------->KAN4(1) -----CBF<---------YAB1  --------->YAB1   ----------->GT1----------->GT1  --------------------->WRI1   aaaaggtaattataatttttgcaaaaataatcacctcaatacaagggataattgaagatttgttaaaaactcttgtctttgctctcaacgaacattccaa  2527900                                                                        --------->YAB1        -------                                                                     --------->GLK1(1)       <-------                                                                     <---------GLK1(1)   --------->REM1(1)                  <---------YAB1<-------TEIL                       <------ZmHOX2a(1)    ------>MYB46(1)                --------->YAB1 --------->CCA1(2)            --------->MYB52(1)          ------>MYB83     <-----------GT1<---------ARR11(3)                      <---------WRKY18(1)       <---------MYB59 ------->GT1    <---------ICU4--------->ARR14(2)           ----------->HVH21        ------->TEIL ---->DOF2     --------->ICU4 <---------ARR14(2)           --------->WRKY12   <-------TEIL   --------   agtaaaataacattgtaaacatgattttttcagatacaaagaatgtgagaatggtctctccttgacggaggaaatcaaaatacatggacctacatccaga  2528000                                            <---------AHL20(2)                                           --------->AHL20(2)                                           <---------AHL20(2)                                   --------->TOE1(3)                                <-----------GT1  <-----------GT1                       <-----------HVH21   --------->AHL20(1)                      <------MYB83 --------->TOE2(3)                                                > -->LBD16             <------MYB46(1)      <---------AHL20(1)                                       - --HSFB2a(2)         --------->MYB59  --------->AHL20(2)                    <----------ID1 ------->TEIL ->HSFB2a(2)         <---------MYB46(3)   --------->AHL20(2)    ---------->DOF2 ---------->DOF2   <--   aatttagaacttaaatttttagttgggtcagaaataaccttaaaattaattttactatgccaggcccaaagcttcaatacaacaaaggaaatggatgttg  2528100                                                                                          <------MYB83                                                                                          <------MYB46(1)                                                                                          <---------ANAC55(2)                                                                                          <---------ANAC46                                                                                         <---------AtMYB61                                                                                         --------->MYB111(2)                                                                                         --------->MYB46(2)                                                        --------->At5g28300              --------->MYB52(2)                              <---------ZAT2     <---------bZIP60(1)              ------------>AtMYB77                              --------->ZAT2     --------->bZIP60(1)             ----------->HVH21               <---------ANAC58                  --------->ANAC58  <---------ETT(2)      --------->MYB59               <---------ANAC58                  --------->ANAC55(2)            <-----------HVH21            ------->MYC3      <---------At4g35610--------->ANAC58  --------->WRKY12      --------->MYB111(1)            <-------MYC3      --------->At4g35610<---------ANAC55(2)<---------WRKY18(1) <---------MYB55(1)  <---------MYB52(1)        <------NtERF2     ----------->TGA1     --------->WRKY45    <---------MYB52(1) >>>>>>>>AtERF-4          <---------DEAR3(1)  ----------->HVH21    --------->WRKY38(1)<-----------HVH21 -------->RAP2.3(2)     <-----------HVH21    <-----------HVH21  <-----------RAV1(1)   <-------GAMYB < -------At4g35610 <---------WRKY18(1) <-------TEIL     ----------->GT1         --------->bZIP60(2) --   agccgctagcttcacatgcttgacttcgtcggagctgaaatgcattcggtgacggaacagtaaatactgttgaccagagacatgtcacggttaggtgaga  2528200                                                                 --------->ANAC46                                                                 --------->bZIP60(2)                                                          --------->CCA1(2)                                                          --------->ARR14(1)                                                         <---------GLK1(2)                                             --------->YAB1<-------TEIL<-------TEIL                                 <---------HSFB2a(2)     --------->ARR11(1)       ---------->DOF2           --------->HSFB2a(2)     <---------ARR14(2)                   -------     <---------ATHB12    ---------->DOF2  --------->WOX13(1)     --------->ANAC58             <------ -------TEIL        --------->GLK1(1)    <-------TEIL    --------->ARR14(2)      --------------->AGL15 ------->CCA1(2)   <------ZmHOX2a(1)---------->DOF2--------->YAB1--------->ANAC58<---------------AGL15   gatacaaatcaaagagcgagaggaatccaaagcatcgcgaaagtccatcaaaatcaaaagattcgacacgacatacattgtctctaaaatgagcaagatg  2528300  Previous    Next  AGI:  At2g06400.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.2e-27 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 2523642    to: 2527754    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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