Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------ANAC55(1)       <---------ANAC58       <---------ANAC46       --------->ZAT2       <---------ANAC58 ------>ZmHOX2a(1)       <---------bZIP60(2)    <---------ZAT2 <-------TEIL       <---------ARR11(3) ------>GLK1(1)     --------->ARR11(3) ------ARR14(2)    <---------GLK1(1)                                      --------->At4g35610<------- ----->ARR14(2)    --------->GLK1(1)                                      <---------At4g35610<------- --->LBD16    --------->At4g35610           <-----------GT1               <---------ZAT2     -------- ---HSFB2a(2) <---------At4g35610       <----------DOF2                   --------->ZAT2    <-------- -->LBD16     <---------ZAT2  <---------At4g35610             --------->TOE2(3)             --------- -->HSFB2a(2)--------->MYB52(2)     <---------CCA1(2)         --------->YAB1             <---------At4g35610 --LBD16 --------->ALFIN1     --------->At4g35610 <----------DOF2 <---------YAB1   <---------LBD16   aaattcatggcgtgttagctgatatccttctcagctctctatcttttaatctctttgtctgtaatcttattcttacagctgcaacttcggaagcagatgc  2484500                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <---------At4g35610                                    <---------TOE2(3)    <---------ANAC58        <----------DOF2          <---------MYB52(1)  --------->HSFC1(2) --GLK1(2)                      <-------GAMYB        <---------HSFC1(2) --ARR14(2)                --------->ETT(2)          --------->HSFB2a(1)                            - ->ARR14(2)                --------->ZAT18  --------->WOX13(1)                                      - -At4g35610          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC58                        ---- >At4g35610         <---------YAB1  <---------TOE1(3)<---------HSFB2a(1)                <---------CCA1(2)   tctagcaaaactttctctctctatgtttgtggaccgttaagcttatcaattaagaagtttcttgatcaaaaaaaaaaaaacatagttgtcttatctcatt  2484600           <---------AHL20(2)          --------->AHL20(2)      --------->AHL20(1)      <---------AHL20(1)      <---------AHL20(2)                   --------->ANAC46      --------->AHL20(2)                 <-----------GT1     --------->AHL20(2)              --------->AHL20(2)                                         -----     <---------AHL20(2)              <---------AHL20(1)                                         <----   --------->YAB1                    <---------AHL20(2)                                         <---- --------->AHL20(2)                  --------->AHL20(1)                             <---------ARR11(3) -------->AHL20(2)                 <---------AHL20(1)                    <---------AtLEC2       ----- -------->YAB1      --------->YAB1 <---------AHL20(2)               <---------MYB52(1)         ------ ----->YAB1--------->AHL20(2)     --------->YAB1                ------->TEIL        --------->ARR11(3)   aataaaaataaattaaaatgaataatacattttgtataatattttactcaacagttctaaaccatgaaccggtttgtatgaaggaatatctattgaaata  2484700                                                                                                 ----                                                                                                <----                         --------->ICU4                                                         -----                         --------->AHL20(2)                                             ----------->GT1          --------->ARR14(2)                                              <------NtERF2 <------MYB46(1)          <---------ARR14(2)                  ------->TEIL               --------->ANAC58    <-------         --------->GLK1(1)                 <---------ATHB12              --------->ANAC58   --------- ---->ARR14(2)      ----------->GT1--------->AHL20(2)        ----------->GT1            <------MYB83 -------GT1       --------->REM1(2)<---------AHL20(2)        --------->LBD16           --------->MYB59 -----ARR14(2)  ------->MYC3 <---------AHL20(2)            <---------At4g35610         --------->MYB46(2) ---->ARR11(3)  <-------MYC3 --------->AHL20(2)            --------->At4g35610        <--------P----- --->CCA1(1) --------------->AGL15--------->AHL20(2)    <---------At5g28300        <---------TOE2(3)   tccacattgacatatccatgtgtagaaatatttatatttaattcaatgaatttgaaatcacagcggaaaattagccagcaatacgaaggtaggttaaaga  2484800         <---------ZAT18         --------->ZAT14      <---------ANAC46                                 <----------DOF2 ----->CCA1(2)                                ------>MYB46(1)                                    <--- -----ARR11(3)            --------->CCA1(2)   ------>MYB83                                --------->ANAC58 ---->ARR11(3)   ----------->TBP ----------->GT1   <-----------GT1                        --------->ANAC58 --TOE2(3)     <---------------AGL15        --------->TOE2(3)      <----------DOF2--------->HSFB2a(1) ->DOF2  <---------ZAT14<------ZmHOX2a(1)   <---------MYB59  <---------ICU4       <---------HSFB2a(1) ---->AHL20(1) --------------->AGL15  --------->YAB1  --------->TOE2(3)  <---------AHL20(2) ---------   tattggtttagtgaagtctatatataggatataaactgtaacataacctaatattacctttaaaaatttcttttttaaaatggaagactcccaagaaagc  2484900                                                                                           --------->YAB1                                                                                           -------->HAHB4                                                                                           --------->ATHB12         <---------At4g35610                                                              <---------ATHB12         <---------ZAT2                                                            --------->DAG2         --------->At4g35610                                                  <------ZmHOX2a(1)       *TSS                                                   <---------AHL20(2)  ---------->DOF2  -- ------MYB59                   ---------->DOF2             ------->TEIL<---------YAB1     <---------YAB1 ->DOF2--------->ZAT18    <---------YAB1        <-----------HVH21      <---------AHL20(2)<---------TOE2(3)   ctaactatgtgagctgtagtagaaagttatgaagaaagcgagagttcaaatgtcatagatgtattttaaaatttttattaggaataaagctaatgataga  2485000                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                xxxxx                                                                                                <----                                                                                                -----                                                                                 --------->ATHB12<---                                                                                <---------YAB1  <----                                                                               <---------ARR11(3)<---                                                                              <---------GLK1(1) -----                        <---------AHL20(2)                          <---------MYB46(3)         <-----               <---------ARR11(3)                                 <---------At4g35610       <--------               --------->GLK1(2)                               ========================HOX2a_HOX2a               --------->ARR11(3)         <---------At4g35610  ------>ZmHOX2a(1)<------ZmHOX2a(2)<---            --------->AHL20(2)   <------MYB46(1)              --------->TOE2(3)--------->ARR11(3)xxxx ------->YAB1 --------->RVE1(1)  <------MYB83          <-----------GT1<---------MYB52(1)    ---------   atgatatgttttaaaaaaatctgtttttattttgtaggtgattccgatgagggaattttacattcctcagccgttgatggagatcattgtaagtaaggtt  2485100 ---->MYB111(2) -----AtMYB61 ---->MYB46(2) xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         --------->ANAC58 -----DEAR3(1)                                                                            --------->ANAC58 ---->MYB55(2)                                                      ---------->DOF2      --------->SPL7 ---MYB83                                                          <---------WRKY12     <---------SPL1(1) -----MYB46(3)                                                   <-----------HVH21      --------->SPL1(1) ------MYB46(3)                          <------ZmHOX2a(1)       --------->LBD16       <---------SPL7 ---->MYB111(1)                     <---------STY1(2)           <---------ANAC55(2)    <---------SPL1(2) ---P                              --------->ANAC58    --------->ARR11(3)             <---------ANAC58 -TOE2(3)                        <---------ANAC58      --------->ARR14(2)             <---------ANAC58 ---MYB46(1)     <----------DOF2 <---------ANAC58      <---------ARR14(2)            --------------->AtSPL3 xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC58   <------ZmHOX2a(1)      --------->TOE2(3)     -- >MYB59 <---------ANAC46--------->ARR11(3)    --------->ALFIN1  <---------ANAC46   ------------------   ggtgaagatggtgttgatgctttgaagaactagttgctcgctaggagagaggggaaggatactgttccgtcaaagaaaacattagcatccgtacgaattg  2485200                           <---------ATHB12                        <---------WRKY12                               --------->LBD16                    <---------AtMYB61                                  ------>NtERF2                 <---------AtMYB61                               <---------ANAC58        <---------ICU4  <---------WRKY38(1)                      <---------ANAC58        <--------HAHB4 --------->WRKY18(1)       <---------GLK1(2)    --------->RAP2.6(2) -------->DOF2   --------->ALFIN1    ---------->DOF2      ---------->DOF2        <---------ANAC55(2) >SPL14<---------YAB1<---------MYB46(3)     <-----------GT1--------->DAG2     --------->GLK1(2)   acaaagaccatcatttcatgtggtggtcaatgactcattcaaagtattacacattcttcaaaaagtgtcttgccgcaaataatccgtatgcgaagtttgt  2485300                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               <---------ZAT14         <---------ANAC58        --------->ANAC58                          --------->WRKY12             <---------ANAC58        --------->ANAC46                          --------->WRKY45           xxxxxxxxxxxxxxxx>smallRNA(i)                          --------->ZAT18       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          --------->WRKY38(1)--------->At4g35610 <---------ANAC58       <---------MYB46(3)                 <---------ANAC58            <---------At4g35610 <---------ANAC58   <---------AtMYB61                 <---------ANAC58          --------->HSFB2a(2)   --------->ALFIN1 xxxxxxxxxxxxxxxxxxx                 <---------ANAC46 <---------------AtSPL8<-------GAMYB       <---------WRKY12  -------           <------ZmHOX2a(1)>>>>>>>>>WRKY6 <---------HSFB2a(2) <------MYB83 <---------WRKY38(1)       ---------->DOF2  --------->At4g35610<-----------RAV1(2) <------MYB46(1) --------->ANAC58    --------->YAB1   <---------YAB1 <---------ZAT18--------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   agagaatcacaaaggactggcttatgagttgactatagggtacttccagatgagatttcgttggaaggtgtgccatggtaaacgcattggtggtttactc  2485400  Previous    Next  AGI:  At2g06290.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.2e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element) Range:  from: 2475749    to: 2484520    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g06296.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 2484907    to: 2485728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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