Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->AHL20(2)                              <---------AHL20(2)                             <---------AHL20(2)                      <---------AHL20(2)                      <---------YAB1---------->DOF2                   --------->AHL20(1)                --------->AHL20(2)<---------AHL20(2)        <---------AHL20(2)   --------->AHL20(2)                   --------->WOX13(1)       --------->AHL20(2)   <---------YAB1                    ----------->GT1       <---------AHL20(2) --------->YAB1          <---------ANAC55(2)    <---------------AGL15<---------YAB1           --------->ANAC55(2)        --------->ATHB12   <---------YAB1  <---------AHL20(1)    ---------->DOF2  <-----------GT1   <---------YAB1   tacttacaattaaatgaaaaaaatattattataaatttaaaagaaaagaatcacgtttttcaaccggttaatcaggctatgatttgataatacgatgaca  2414800                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                        --------->ATHB12                        <------------ATHB5                        <--------ATHB1                        --------->YAB1                        <---------ICU4                       <---------ATHB12              <---------TOE1(2)              <---------TOE2(2)            --------->TOE1(2)<---------ALFIN1                                          ------>ZmHOX2a(1)           <---------ANAC55(2)                                                        --------->TOE2(3)           --------->ANAC55(2)                    <------ZmHOX2a(1)           --------->YAB1   <-----           <---------O2--------->ICU4        <---------REM1(1)            <----------DOF2   <-------- <----------ID1 <------ZmHOX2a(1)           <---------TOE2(3)     <-----------GT1  <-----------GT1   aaaaaaacaaatcacgtaggaatcaatgattccacctcttgtatttgatgtaggagagattagcagttttacatttcttttcatatttccttattttaag  2414900                                                                  <---------ANAC58         <---------ANAC46                                         <---------ANAC58            -------      <<<<<<<<<MYB98                                             --------->At4g35610     <---------AHL20(2) ----TOE2(3)                            <----------DOF2       <---------ANAC58           --------->AHL20(2) -AHL20(2)                       <---------AtMYB61            <---------ANAC58          --------->AHL20(2)   ttttctatgttacttagagttttctgttttatgttttggtttctttagagagagaccctaagttgtttgctggacatgtttttcattcgaattaataaaa  2415000                                      <-----------GT1                              --------->LBD16                             --------->HSFB2a(2)                             <---------HSFB2a(2)                         --------->GLK1(1)                                                        ---                         <---------GLK1(1)                                             <---------ANAC58                     <---------WOX13(1)                                                <---------ANAC58               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    ------>ZmHOX2a(1)         --- --->DOF2<------------------------ANAC81                              <-----------------AGL1      <--   gcagagagtttttctctaatttgatggatttccagagtttcaacccttcaagttcgacgcttgcaaacttattcctacttaggcatagtgcttgctattc  2415100                                                           <---------At4g35610                                                           --------->At4g35610   <---------ARR14(2)                                                         *TSS             ---------->DOF2                                                  <---------At4g35610  <---------TOE2(3)              <-----------HVH21            ------>ZmHOX2a(1)      --------->ATHB12  <-----------HVH21             <---------ANAC46            ----------->RAV1(2)      <---------ICU4 --------->ARR11(3)    --------->ARR14(2)              <----------DOF2      <-----------RAV1(2) --------->At4g35610    <---------ARR14(2)        <---------ZAT2      <---------ZAT2  -------->ATHB1 --------->ARR14(2) --->ZmHOX2a(1)               --------->ZAT2<-----------HVH21    <---------ATHB12<---------ARR11(3) ------>HSFB2a(2) <---------O2--------->ZAT14     --------->ZAT2------->TEIL <---------At4g35610 -------HSFB2a(2)<XXXXXXXXXXXXXXXXXXXXMIR845A     --------->At4g35610 >>>>>>>>>WRKY18       <--------   ctagaggttccgactgcgtcaagtggtatcagagcaggctttctcctgtctcagctatggcagatgaatcattgacgaaagcagaccttcagggctttac  2415200                                         <---------ANAC46                                    --------->At4g35610                        <---------ICU4                                    <---------At4g35610                        --------->YAB1                                 <---------ATHB12     --------->At4g35610     --------->ICU4                                ------>MYB83----------->HVH21               --------->YAB1-----------      <-----------GT1           ------>MYB46(1)       <---------At4g35610  <---------ATHB51    <-----    <-------GAMYB         <---------ATHB12<----------DOF2                --------->YAB1   --------->ANAC46   --------->MYB111(2)--------->ZAT14    <---------ANAC58       --------->TOE2(3)   --------->At4g35610   <---------MYB46(3) <---------ZAT14    <---------ANAC58       --------->TOE1(3) --------->YAB1  <--------P     ----------->HVH21--------->YAB1 --------->At4g35610  ----------->RAV1(1)--------->RAP2.6(3) --DOF2    <---------DEAR3(1)  --------->WOX13(1)<---------At4g35610 --------->MYB46(3) --------->MYB52(1)   cgaggttgttacctcggctctgactgcaatgaccaatcagatggctttgacaactgagctcaaaaacgtcaacaacaataataatcagcaaaacggcaga  2415300                                                           ----------->GT1                                                           --------->YAB1                                                          <---------TOE2(3)                                                        <---------ICU4                                                        --------->YAB1                                                       <---------ATHB12                                                       <---------ATHB51                                                    <---------------AGL15                                                    --------------->AGL15                                                   <---------MYB59                              --------->ANAC46     <-----------------AGL3                  --------->MYB52(1)               ----------------->AGL3                 ------>ZmHOX2a(1)                 <-----------------AGL2                     <------               ------>ZmHOX2a(2)                   ----------------->AGL2                ---------->DOF2              <------ZmHOX2a(2)                    <-----------------AG             --------->LBD16             <---------ARR14(2)                    ----------------->AGL1           <---------LBD16             --------->ARR14(2)                    <-----------------AGL1          --------->TOE1(2)             <---------ARR11(3)         <------NtERF2  --------->ICU4              <---------LBD16    ----------->GT1      --------->GLK1(2)        --------->ANAC58                <---------LBD16 ------------->ANAC81    <-----------ARR10 ---------->DOF2<---------YAB1 --------->At4g35610  ------- -NtERF2     --------->ARR11(3)------->GAMYB      --------->ANAC58     --------->YAB1--------->LBD16   gaagaagagcaaatagatcctaacgagaatcaacgcagaggcagagaaagagacccaattatggtaacaaaaatcagcatagaaaccggggaaaagaaat  2415400                         --------->WOX13(1)                       <---------YAB1                     --------->YAB1                    --------->ICU4                                             --------->ANAC58                    <---------YAB1                                             --------->ANAC58     -          --------->MYB52(1)                        <------ZmHOX2a(1)        ---------->DOF2        <         <---------GLK1(1)  --------->YAB1<-----------RAV1(1)               <------ZmHOX2a(1)      <- ---GLK1(1)  ------->GAMYB <---------ATHB12<-------GAMYB                  <---------TOE2(3)        -- -->GLK1(1)<---------At5g28300         <---------ARR11(3)       <------ZmHOX2a(1)                ----   cccaagagtggataaccgtgttattatcaatgaaaattcaagttctgttgaagaggaatttgtggaggaagaagttgaggaaaggaatcaacaaaatagt  2415500                                                                 <---------WOX13(1)                                                                <---------GLK1(2)         --------->REM1(2)                                     --------->ATHB12      <---------ANAC46                                       --------->HSFB2a(2)      <---------ANAC58                                       <---------HSFB2a(2)      <---------ANAC58                                     <-----------------AGL1     <-----------------------TaNAC69(2)                --------->ARR11(3)                        ----    <---------At5g28300                                <---------ARR14(2)                     <------ -------->ATHB12                                       <---------ARR11(3)               <-------TEIL ---------ICU4                                         --------->ARR14(2)            <------MYB46(1)< --------YAB1          >>>>>>>>>>>>>>>>>LFY         <---------TOE1(3)                <------MYB83<--- ------->ICU4<---------TOE2(3)          <---------YAB1<------ZmHOX2a(1) <---------ARR14(2)    <------ ----->YAB1  <---------TOE1(3)      --------->YAB1  <---------TOE2(3)   --------->ARR14(2)<----------DOF2   catgattaccgtgtaaaggttgacattccattgttctatagtactattggagttgaggattttctagattggcaaatcagcgttgataggttctttgagg  2415600                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                    <---------ANAC46                                                                  <---------MYB46(3)                                                                  <---------ANAC46          --------->LBD16                                        --------->ALFIN1         --------->LBD16                                         <---------AtMYB61        <---------LBD16                                         <---------ZAT14     <---------ARR14(2)                                         --------->ZAT14     --------->ARR14(2)                                        <---------ANAC46    --------->GLK1(1)                                          --------->ALFIN1    <---------GLK1(1)                                        <---------ANAC46 ----->ARR14(2)                                            --------->ZAT2 <-------TEIL ---TOE1(3)                <---------YAB1                  <---------ZAT2--------->CCA1(2) ---------ANAC46  --------->ANAC58      --------->YAB1     --------->At4g35610 ------ARR14(2)   --------->ANAC58     <---------ATHB12    <---------At4g35610                     -- ---TOE2(3)  ---------->DOF2         --------->WOX13(1)  <---------RAP2.6(2)                 --------   ttatgggtatccctgaaaagaagcaagttaagatggtagcaatcagattagagagtattgctgctgtgtggtgggatacacttgttgttcaaagacaaag  2415700  Previous    Next  AGI:  At2g06170.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.7e-91 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 2415157    to: 2418276    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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