Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->ARR11(3)                                      ----------->GT1                 --------->ARR14(3)                                 ----------->HVH21                    <---------ARR11(3)                               <---------At4g35610                   --------->GLK1(1)                               ----------->RAV1(2)                   <---------GLK1(1) <---------YAB1 ----LBD16                     --------->At4g35610         <----------DOF2  <---------MYB52(1) ->KAN4(2)             --------->ANAC58               --------->DEAR3(2)------>ZmHOX2a(2) -KAN4(1)              --------->ANAC58              --------->MYB52(1)<------ZmHOX2a(2) >KAN4(1)              --------->ANAC46         --------->AtLEC2---------->DOF2      --------->YAB1   ggagaaaccccatcgctcttcatacactcaaacatctgaccggctaaatcgtgcaaaccggctttacaaagagatctcgttagcaaattataagtccaaa  2329300         --------->KAN4(1)                                                                     ------        ------->TEIL                                                                 ---------->DOF2        <---------KAN4(2)                                                         --------->TOE2(3) -     <---------YAB1         --------->ZAT14                            <---------ARR11(3)    --------  ----------->HVH21  ------->TEIL                        <------ZmHOX2a(1)        --------->TOE1(3) <   acgaatgacgaatgttcaatttgaatctactaaactcccaaaatcgaaaccctatgtgaggattgttatccaatttcttcacaacctcaaaggagataaa  2329400                                              <---------GLK1(1)                                          <---------HSFB2a(2)                                          --------->HSFB2a(2)                                       --------->ARR14(2)                                   ------>ZmHOX2a(2)                                   <-----------------AGL3                                  --------->CCA1(2)                                  --------->At4g35610                                  <------ZmHOX2a(2)                  --------->ARR14(1)                                 --------->ARR14(2)                  --------->CCA1(2)                 --------->ANAC55(2)   --------->GLK1(2)--------->ANAC46                 <---------ANAC55(2)   ------->TEIL     --------->ANAC58         <---------ANAC58        <---------ARR14(2)     --------->ANAC58         <---------ANAC58        <---------ARR11(3)  <---------ZAT14--------->ARR11(1)       --------->GLK1(2)         --------->AGP1      --------->ZAT14--------->ARR14(2)      <---------GLK1(2)          <---------AGP1      <---------REM1(2)<-------TEIL     ------>MYB83 --->MYB52(1)<---------ANAC58    --------->ARR11(3)--------->ZAT14  <---------ARR14(2) ------>MYB46(1) -------->ARR14(2)              --------->GLK1(1)  <---------ZAT14----------->ARR10 --------->MYB46(3) ->CCA1(2)   <---------ANAC58   <---------GLK1(1)--------------->AtSPL8            -------->P  <----- ---------ARR14(2)  --------->MYB52(1) <---------ARR14(2)    ---------->DOF2      --------->MYB52(1)   cggatttagattcttgcttaagtaacagaaacagagatctgaatctggaactctgtacacgaacaaagtagatacgattttgactaaccaagcttcagga  2329500                                                                                         <-----------RAV1(1)                                                                                    <------NtERF2                                                                                 ====================                                                                                 <-----------HVH21                                                                                 <-------GAMYB                                                           <---------ANAC58      --------->ATERF1(1)                                                           <---------ANAC55(1)  <---------MYB46(3)                        <---------ANAC46                   <---------ANAC55(2)  <---------DEAR3(2)                 <-------GAMYB                             <---------ANAC58     <---------SPL7                <-----------RAV1(1)                        <---------ANAC46    <---------ANAC58                --------->ALFIN1               ------>ZmHOX2a(1)               <---------RAP2.6(2)            <---------ANAC58              --------->At4g35610                  <---------DREB2C(2)            <---------ANAC58              <---------At4g35610--------->ALFIN1  <---------ANAC58 -ZmHOX2a(1)<---------ANAC46   <------ZmHOX2a(1)    --------->YAB1          <---------DEAR3(1)      <   caatggattacttctcgtgtgttgttctgtagaggacgagcttgagctcctccatgagaatgcgtgtggaaatgagcgatggcggtcgcgaatgttgttc  2329600                            <------NtERF2                           --------->LBD16                          <---------DEAR3(1)                         <------NtERF2                         <---------At4g35610                         <---------LBD16                        <---------ORA47(2)                        <---------RAP2.6(1)                        <---------RRTF1(1)                        <---------DEAR4(2)                        <---------RAP2.3(1)                        <---------ERF1                       <---------RRTF1(2)                       <---------RRTF1(3)                       <---------RAP2.3(3)                       <---------RAP2.6(2)                       --------->ATERF1(2)                       <---------DEAR3(1)                       --------->DEAR3(1)                       <---------RAP2.3(2)                      <---------LBD16                  --------->MYB52(1)         --------->O2 <---------ABI4(1)         <---------ANAC46--------->ATERF1(1)         <---------ANAC58<---------ABI4(1)         --------->TGA1a<---------ATERF1(1)         <---------O2<---------RAP2.3(1)         <---------ANAC58--------->At4g35610         <---------TGA1a------>NtERF2     --------->DEAR3(2)<---------ATERF1(2)                                  <---------AHL20(2)    --------->MYB52(1)--------->ATERF1(1)        <---------ANAC58   <---------At4g35610 --------->YAB1   <---------ARR14(2)--------->At4g35610      --------->WOX13(1)         *TSS   ------ ==================MYC_MYB<---------ANAC46       <---------ANAC58   --------->At4g35610<---------At4g35610 ---------ATHB12  --------->ARR14(2)<---------At4g35610    --------->WRKY18(1)         --------->At4g35610   gaatcataccggcgtgagaatatcggcggcggagattgagcttaagctagggcttgttttggtcaatctcatctgtatttttttttttcagatgagagtg  2329700                                         --------->HSFC1(1)                      --------->ATHB12                                         --------->HSFB2a(2)                     -------->HAHB4                                         <---------HSFB2a(2)              --------->LBD16                           ------------>CBF   <------ZmHOX2a(1)          --------->ANAC58                   --------->ANAC58      <---------HSFC1(1)              --------->ANAC46                   --------->ANAC58 --------->HSFC1(2)               <-----------GT1             --------->WRKY12       <---------HSFC1(2)          ----------->GT1 <---------ATHB12            --------->DOF5.7(2)     --------->HSFB2a(1)    --------->AHL20(2)   --------->ICU4  <---- --->ALFIN1--------->TOE2(3)        <---------HSFB2a(1)  <----------DOF2 --------->ANAC58    --------   tgtgaaactgaaacgtttaccaaggaaggaacaatagaaccttctagaggagctagaggcttttaatagttaaacccgctaaatgattaagagtctttgt  2329800                                                                                                 ----                                                                                             <-------                                                                                        <-----------GT1                                              <---------YAB1<---------ARR11(3)     <---------ZAT14    <-----------GT1      --------->ANAC58    <---------TOE2(2)                     --------->ZAT14 -------GT1              --------->ANAC46    <---------TOE1(2)        <---------YAB1 ----------->GT1 ------->AtSPL8          --------->ANAC58 --------->YAB1    --------->ARR11(3)     --------->ZAT18   accatttcacgatttcagagtctatacaagacaactgttttcagtcatatgtttgggctcaaggtctctgttttgattcacagagtgaagtaactcttta  2329900                                                                                            ------>NtERF2                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                               <---------ANAC46                                                                              xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           --------->At5g28300                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     ---------->DOF2      <---------ANAC58                                                                 ------>ZmHOX2a(2)       <---------LBD16                                                                 <-------TEIL--------->ZAT14<------NtERF2                                   =====================================HOX2a_HOX2a  <xxxxxxxxxxxxxxx   ------>NtERF2                   ------>ZmHOX2a(1)            <------ZmHOX2a(2)   --------->ARR11(1)  <---------ZAT18     --------->ANAC58    <---------MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ZAT18     --------->ANAC58------->TEIL             <---------ARR14(2)   <---------ARR14(2) ------>DOF2    <---------MYB52(1) ====================================HOX2a_HOX2a  --------->ARR14(2) ---DOF2       <-----------HVH21 ----------->RAV1(2)           --------->ARR14(2) ----------->ARR10   aaagcggactaggtgtccgtcaagacgctaggcgctcctgtaccgttttattttttaaaaaatcggatccattaagcggtgaagtagatttggcggacaa  2330000                                                             <-----------ARR10                                                             <---------ARR11(1)                                                             <---------ARR14(2)                                          <------NtERF2      --------->GLK1(2)  <---------YAB1      <                                         --------->LBD16     ------->TEIL    <---------YAB1    ------                                 <----------DOF2             --------->ARR14(2)<---------AHL20(1)   -                    ----------->GT1    <---------LBD16      <---------ARR14(1) <---------AHL20(2)   -        --------->MYB52(1)      <------NtERF2         --------->CCA1(2)------->TEIL       --------->AHL20(1)      ---------->DOF2          ------>NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->AHL20(2) xsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----------->ARR10  <---------CCA1(2)   <---------AHL20(2)   tgcagacataaaacggattagacggtatttaggcgcgtttaggcgggatagatgagataagcgaatctaaatgtatcttattatttttgaaattttttaa  2330100       <---------YAB1      <---------AHL20(2)      --------->AHL20(2)                        <---------AHL20(1)     --------->AHL20(2)                    <---------AHL20(1)     <---------AHL20(2)                    --------->AHL20(2)     --------->YAB1                        <---------AHL20(2) <---------YAB1                         <---------AHL20(2)                                         <- --------->AHL20(2)                   <---------YAB1                                         -------- <---------AHL20(2)                --------->AHL20(2)          --------->TOE2(3)            --------- ---------AHL20(1)                 <---------AHL20(2)         ----------->GT1           --------->AHL20(2) --->AHL20(2)<---------ANAC46      <---------YAB1     <-----------GT1                   <---------AHL20(2) -------->AHL20(1)              <----------DOF2 --------->AHL20(2)                      --------->AHL20(1) -------->AHL20(2)              <---------DAG2  <---------AHL20(2)   --------->TOE2(3) --------->AHL20(2)   aatataattaaaattgtgtttaaaaacaactatactttttattattttattttattttactaaaatgttaaacttaaattgtttttcaaaaaaattgata  2330200  Previous    Next  AGI:  At2g06000.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65245.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2327632    to: 2329688    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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