Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->YAB1   --------->At4g35610   <---------At4g35610  --------->MYB52(2)                                                           <-----------GT1 -------->DOF5.7(2)                                                   <--------P      --------->YAB1 ---------MYB52(1)                --------->TOE2(3)                   <---------WOX13(1) ------->TOE2(3)            --------->ANAC55(2)--------->YAB1       ----------->GT1<---------ICU4---- ------->TOE1(3)      <-----------GT1   <---------ICU4     <---------GLK1(1)  --------->AHL20(2) <---   acgttagctatcatcttgagttttttacatatgtaatctcaaatattactaataagtttagagctctgtatggttgataatttactaattagaaccatga  2325400                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                         <---------ICU4<-----------GT1                                                                ----------->GT1    <---------AHL20(1)                                                             ---------->DOF2       --------->AHL20(1)                                                           --------->LBD16         --------->AHL20(2)                                                          <---------HSFC1(1)       <---------AHL20(2)                                                          --------->HSFB2a(2)     --------->AHL20(2)      <---------ATHB12      ------->TEIL                  <---------HSFB2a(2) <---------YAB1 ----->bZIP60(1)         <---------YAB1        --------->ARR11(3)  ----------->GT1--------->YAB1 ------bZIP60(1)      --------->ICU4           <---------ARR11(3) ----------->GT1<---------YAB1     <   catcaacaatgaagaatacaaaacatgatgaatcaacgagaaataagaagctcttgaattccagaaaggagataaaaatgactattatattacttcccct  2325500                                                                                                 ----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                <---------ZAT6                                                           --------->AHL20(2)           --------->YAB1                                                         --------->AHL20(2)          <---------YAB1                         ------->TEIL       --------->ANAC58  <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <---------CCA1(2)   --------->ANAC58 <---------AHL20(2) -----------HVH21 <---------YAB1     --------->AHL20(2)           ---------->DOF2 <---------AHL20(2)   ctggtcaccagtatcatagtattatacataaaaaaaaaaaaaaatagcatgtatctatatttcatcttaaaagcaaaaattcaattttttatttaataaa  2325600                                           --------->AHL20(2)                                          <---------AHL20(2) <---------AHL20(1)                                      <---------AHL20(2)     --------->AHL20(2)                                      --------->AHL20(2)  --------->AHL20(2)                                  --------->AHL20(2) --------->AHL20(2)                          <---------AHL20(1)         <---------AHL20(2)                             -           <---------ARR11(3)     <---------AHL20(2)<---------AHL20(2)                            <--      <---------SPL7      --------->AHL20(1)        --------->AHL20(2)                           ----     <---------ANAC58     <---------AHL20(2)        --------->YAB1                               ----     <---------ANAC58     --------->AHL20(2)  --------->YAB1 <---------AHL20(2)                  <---     <---------ANAC46     <---------ARR11(3)  --------->TOE2(3)                                  <--- ----->AHL20(2)           --------->ARR11(3)--------->AHL20(1)                                 <----- --->AHL20(2)            --------->AHL20(2)--------->YAB1--------->AHL20(2)          <xxxxxxxxxxxxxxx -->AHL20(2) ------>ZmHOX2a(2)--------->AHL20(2)<---------AHL20(2)                  <xxxxxxxxxxxxxxxx -->YAB1   --------->ARR11(3)<---------AHL20(2) --------->AHL20(2)      <----------DOF2      --------   aatataggcgtatgatctatctcttaaatatattatttatataaataatattaattaaaataaaaaatttctaactttctaacaaaaatatcaacgcggt  2325700       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ------------>CBF       --------->WRKY18(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->LBD16  --------->LBD16  <---------LBD16                                                                 <---------AHL20(2) --------->DEAR3(1)                                                              --------->AHL20(2) -------->ANAC46                                                               --------->YAB1 -------ALFIN1                                                              --------->AHL20(2)    <-- ----->SPL7                                                                 --------->YAB1        <-- ----->ZAT14                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----TEIL                                  <-----------GT1                --------->AHL20(2)<------NtERF2 ------ZAT14   --------->AHL20(2)     <---------YAB1                  --------->YAB1      <---------DEAR3(1) ----SPL7      ----------->TBP       <----------DOF2            --------->TOE2(3)<---------AHL20(2) xxxxxxsmallRNA(le3)              --------->ARR11(3)         --------->ANAC46  --------->TOE2(3)  <-- xxxxxxsmallRNA(le3)              <---------ARR11(3)     XXXXXXXXXXXXXXXXXXXXX>MIR850    <---------LBD16 ->ANAC46--------->WOX13(1)      <---------CCA1(2)   --------->AHL20(2)  *TSS--------->AHL20(1)xxxxxx   acaccgcgggtcaatctataaataatacaagttttaaatctttattaactcttaaaaaaatccaaaccacaaacaaaataatattaattttctcggcgag  2325800                                                                 <---------ARR11(3)                                                                 --------->ARR14(2)                                                                 <---------AGP1                                                                 <---------ARR14(2)                                                          --------->CCA1(2)             <------NtERF2                                <------ZmHOX2a(2)                      <---             --------->At4g35610                         <---------ARR14(2)                     <----             <---------At4g35610                         --------->ARR14(2)                    <-----           --------->ETT(1)                              --------->AGP1                        <-----           --------->ETT(2)                              <---------AGP1                        <-----           <---------DEAR3(1)                            <---------ARR11(3)                    <-----          <---------ORA47(1)                             --------->ARR11(3)                    <-----       --------->ALFIN1                               --------->LBD16                          ------     <---------ANAC58          --------->YAB1         --------->HSFB2a(2)                      <-----     <---------ANAC46         <---------ATHB12   <---------GLK1(1) ------>ZmHOX2a(2)         <-------     <---------ANAC58<---------GLK1(2)     <---------ANAC58      --------->ARR11(3)         --------- -------ANAC58      <---------ZAT2         <---------ANAC58     <---------CCA1(2)           <-------- -------ANAC46      --------->At4g35610    <---------ANAC46------>ZmHOX2a(2)             --------->DAG2 -------ANAC58      <---------At4g35610<---------ANAC58 --------->GLK1(1)                <xxxxxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ANAC58 <---------GLK1(1)               ---------->DOF2   gcttgcagcgtggtcggcagtcagcttctccaatgagagttgtttgcttgggactccgagatctgtggatctattggatgctctgtcttataaagtgtcg  2325900                                                   <---------ANAC58                                                 <---------MYB46(3)                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58                                         <------ZmHOX2a(2)                                        --------->ARR14(2)  --------->HSFB2a(1)                <---------ANAC46 ---NtERF2                          <---------At4g35610 -----RAP2.3(1)               <---------ANAC58  <--------P ----ANAC46                   <---------ANAC58 <-------GAMYB ----DEAR4(1)                 <---------ANAC46<---------MYB46(3)                  --------->At4g35610 ----RAP2.3(3)           ------>ZmHOX2a(1)------>ZmHOX2a(2)                       <---------At4g35610 ----At1g77200           <-----------RAV1(1)--------->LBD16                    <--------P ----DREB2C(2)           =======================HOX2a_HOX2a                    ---------->DOF2 --->ETT(1)            <---------ANAC58 --------->GLK1(2)                     <---------MYB52(1) ----DEAR3(1)          <---------ANAC46 <---------ARR14(2)                 <---------LBD16      <---- ----HVH21             <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->LBD16  ------- >ALFIN1          <---------YAB1    <---------LBD16<---------ANAC58   <---------ANAC58        ------>MYB83 ---RAV1(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ---------->ID1 <---------ANAC58        ------>MYB46(1) xxxxxxxxxxxsmallRNA(se3)========================HOX2a_HOX2a         <xxxxxxxxxxxxxxxxsmallRNA(i)   gcgaaggctctggtctcattatgtttcctgttgcttgtagcggatccgtggttgtttgtctcactctgttttgctagtccggtaagcagactttccaacc  2326000                                            <------MYB46(1)                              <---------GLK1(2)                              --------->ARR14(2)                           --------->ANAC46 <------MYB83                           --------->ANAC58 <---------ANAC58                    <---------ZAT6     <-----------RAV1(1)                   <---------TOE1(3)   <---------MYB46(3)       <------------MYB.PH3(1)                   <---------TOE2(3)<----------DOF2      <---------ANAC46                <---------GLK1(2)                <<<<<<<<<MYB98<---------ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----DAG2<----------DOF2  --------->ANAC58 <---------ANAC58--------->At5g28300         <---------At4g35610 ->P     <---------DAG2   <---------LBD16  <---------MYB46(3)----------->HVH21    <---------ANAC46 <<   tttcttcatagcctttttgttagggttagacggaatcgcttttgttgggttcttgagttggctgtaacagtttcagagatagtatcgtttagcttctctt  2326100                                  <----------DOF2            <---------MYB52(1)                               <---------ARR11(3)          <---------ANAC58                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           ------                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <----------DOF2     <------                        --------->DAG2 --------->LBD16     <---------ANAC46                   <------ <<<<<<<TBF1          ---------->DOF2<---------LBD16       <---------ANAC58                   -------   cttcttcgacggtctgggatgttgaaaaggcaatgtctttccggttttagttgtttaagtttcgttttgtctctggctgttttggatagaagatgggatt  2326200                                                                                              <xxxxxx                                                                                          <---------ZAT18                                                                                          --------->ZAT14         <---------DAG2                                                                <---------MYB46(3)         <----------DOF2                     --------->GLK1(2)                        <---------TOE1(2)      <---------YAB1                         --------->ARR11(3)                     <----------DOF2   <---------AHL20(2)                   <---------YAB1                              <xxxxxxxxxxxxxxxx --->GLK1(1)                            --------->ICU4        <----------DOF2   <---------GLK1(1) ---GLK1(1)                          <---------AtMYB61     <---------ARR11(3)   --------->GLK1(1) ---ARR14(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx -->ARR14(2)    <---------YAB1   <-------GAMYB             --------->ARR11(3) <XXXXXXXXXXXXXXXXXXXXMIR319A/B   cccattttatgctttttgatgaatgaacgaatgctcgttgtggtgattatctggcctacaagttcttttgtattcttgggagatttctttggttcactct  2326300  Previous    Next  AGI:  At2g05995.1    Description:  other RNA Range:  from: 2325773    to: 2326873    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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