Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <------ZmHOX2a(2)             --------->ARR11(3)             <---------ARR11(3)            <---------GLK1(1)            --------->GLK1(1)    <---------ANAC46                              --------->GLK1(2)  --------->MYB52(1)                             <---------GLK1(2)           <---------GLK1(2) ----------->HVH21                             ----------->ARR10        <----------DOF2 ----------->TGA1                          ----------->GT1            ------->TEIL        <---------ALFIN1 --------ANAC58                           <---------TOE2(3)      --------->YAB1    <----------DOF2 --------MYB46(3)  ---------->DOF2        <---------TOE1(3)     --------->ICU4--------->GLK1(2) --------ANAC58------>ZmHOX2a(2)    <---------ANAC46     --------->TOE2(3) ----------->ARR10   gtcgtgacggagagagatctcaaaagttttcatttgtaacttgtaaggttagattctaaacttaaaatgatgaactttagattctctttatcccacttct  2302400                                                          --------->ATHB12                                                          <-----------RAV1(1)                                                    <---------HSFB2a(2)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)            ---------->DOF2    --------->CCA1(2)    --------->HSFB2a(2)        <---------ICU4   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ARR11(3) <---------ANAC46  ----------->GT1--------->YAB1    ------>ZmHOX2a(1)        <---------ARR11(3)   attgtgtatttcacaaaagtatggagaattgagctatgagaacagtttttggtcctagaattgttggagtaagcttgaagataatgacttaagttataag  2302500                                   <---------ARR11(3)                                   --------->ARR11(3)                                  --------->GLK1(1)                                  <---------RVE1(1)                                  <---------GLK1(1)                                  --------->RVE1(1)                                  --------->CCA1(1)                                  <---------CCA1(1)                                 <---------ARR11(3)                                 --------->ARR11(3)                        --------->TOE2(3)                      --------->ARR11(3)                          --------->TOE2(3)                   --------->AHL20(2)                             --------->TOE1(3)  <------MYB46(1)           <------ZmHOX2a(1)  <------ZmHOX2a(1)       <------ZmHOX2a(1)   ------>ZmHOX2a(1)  <---------AHL20(2)  <---------ARR11(3)          <<<<<<<<<MYB98 --------->ZAT6      <------MYB83  --------->AHL20(2)<---------AHL20(2)    <------ZmHOX2a(1)  <---------MYB59   <---------YAB1   ttatttaaatataggaatagattaaatcttaaggagatatcttaggagttaagttaggagttatctaaccctaatcctattgttatttggttttaaatct  2302600              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  -              ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                       --------->TOE1(3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------TOE1(3)    --------->TOE2(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                       --------->MYB59     --------->At4g35610  <---------AHL20(2) <---------AtMYB61                              <---------TOE2(3)------>ZmHOX2a(1)   ctatatatatgagtcccaaagttgtggtgaaccatatgagttttagagagattaagactttgaaattgtttaggtttgagttatttcctaagcttaataa  2302700                                                  <------MYB46(1)                                                 --------->MYB59                                               <XXXXXXXXXXXXXXXXXXXXXMIR845B                                              <---------GLK1(2)                        <------------CBF                                              --------->ARR14(2)               --------->ANAC58                                              --------->ARR11(1)               --------->ANAC58                                              <---------ARR14(2)             ---------->DOF2              <---------ARR11(3)           --------------->AGL15           ==================HOX2a_HOX2a              --------->ARR11(3)           <---------------AGL15           <------ZmHOX2a(2)             <---------CCA1(2)            <-----------------AGL3   <---------GLK1(2)  <------ZmHOX2a(1)     --------->ICU4                       <-----------------AGL2 --------->LBD16  ---------->DOF2<--- ---------->GT1  <----------DOF2   <----------DOF2<------MYB83 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) *TSS   gagagtaattcttatatatctttgagttcttaatcttctttgaaactagatttggtatcagagcatccaggttttcgatcaaagcaaaggattgaaaaca  2302800                                           <---------ARR14(2)                                           <-----------ARR10                   <----------ID1          --------->ARR11(3)       --------->ATHB12                    <---------ARR11(3)       <---------ICU4        ---------->DOF2<------ZmHOX2a(2)               --------->ZAT6     <-----      --------->ICU4       --------->YAB1  --------->ARR14(2)  <---------TOE2(1)             <-------      <---------YAB1      <---------ATHB12<------ZmHOX2a(1)    <---------TOE1(1)            <-------- ------YAB1     --------->ZAT14        <------ZmHOX2a(1)    <-----------HVH21          --------->ANAC46   tgagtgagattattgcagtaaacaacaaatcaaaagatggaggaggatcatcgtctattcaatgtccgatgttgaataacacaaactatacggtatggtg  2302900             --------->ZAT18             --------->ZAT14                       ------>ZmHOX2a(1)             <---------ZAT18                       --------->LBD16             <---------ZAT14                    ====================HOX2a_HOX2a        <---------RAP2.6(2)              <---------HSFB2a(1)     --------->ALFIN1                    --------->MYB46(3)   <---------------------WRI1   <------ZmHOX2a(1)                     --------->KAN4(1)   <------ZmHOX2a(1) <---------TOE2(3)      --------->ZAT18 <---------KAN4(2)   <----------ID1       ------>MYB83 ----ANAC46  <------NtERF2  ---------->DOF2     <------ZmHOX2a(2)                --------->MYB52(1) --ANAC46 --------->At4g35610      <---------LBD16<---------LBD16                ------>MYB46(1) -AtMYB61 --------->ATERF1(1)--------->DAG2    <---------ARR14(2)   ----------->GT1 --------->DEAR3(1)   tatgaggatggaggctgcactacgagtgcataaagtctggggaacaatcgatcctggattagaggacgaagagaaaaacgacctagccgagcccttctct  2303000                 <---------ANAC55(2)                 --------->ANAC55(2)                                                     --------->At4g35610             <-----------HVH21                                                   --------->GLK1(2)          --------->LBD16                                                       <---------GLK1(2)        <---------LBD16                                                        <------ZmHOX2a(1)  <---------ATHB12   <---------YAB1              ---------->DOF2      <-------TEIL       <---------At4g35610   tccaatctattccggagtcacttattcttcaagtcggaaaactgaagacttcaaaggcagtatgggataagattcaatctaggaatcttggagcagaacg  2303100                                                                                            ---------                                                                                <---------AtLEC2                                                                               <---------ZAT14         ---------->DOF2                                       ------->TEIL    --------->ZAT14      --------->ANAC58                                       --------->YAB1   --------->ALFIN1      --------->ANAC58                                 <------ZmHOX2a(1)   ------->TEIL     <-------- ---------->DOF2               <------NtERF2      <---------REM1(1)     <---------YAB1   <----------DOF2   agtcaaagaagcaaagctaaaaactcttatggcagagtttgacaaactcaagatgaaggacaatgaaactattgatgaatgtgcagggagactttcagaa  2303200                                                                             ---------->DOF2                            --------->ARR14(3)                             ------>MYB83                            <---------ARR14(3)                             ------>MYB46(1)                            --------->ARR11(3)                            ----------->RAV1(1)                            <---------ARR11(3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            --------->ARR14(2)                          --------->MYB46(3)                            <---------ARR14(2)                         ------>MYB83                          ----------->ARR10                            ------>MYB46(1)                 <----------DOF2                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >HSFB2a(2)   --------->ARR11(3)                    <---------TOE2(3)  -------->P        <-------TEIL -HSFB2a(2)   <---------ARR11(3)          ---------->DOF2       ---------->DOF2   ----------->GT1   atttcaacaaaatcaacatctttgggagaagatattgaagaaacaaaagttgttaagaaatttttgaaaagcctaccaacaaagaagtatattcatatag  2303300  Previous    Next  AGI:  At2g05960.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.2e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 2302800    to: 2307971    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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