Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------YAB1    <---------AHL20(2)                                        --------->ANAC55(2)  <---------YAB1                                              --------->YAB1 --------->AHL20(2)          <---------YAB1                  ---------->ID1 -----AHL20(2)              <---------AHL20(2)        <---------AHL20(2)                           <x ---->AHL20(2)              --------->AHL20(2)       --------->AHL20(2)                   <---------AHL20(2) >AHL20(2)           <-----------GT1                 <---------AHL20(2)                   <---------YAB1 -AHL20(2)         --------->AHL20(2)          --------->ANAC46             ---------->DOF2--------->YAB1   taatattatatgatttttcaataaaaccattttaatagttttctcatactcgaaattttttttttcgtaatccaaactcaaagtatgggtatataatagt  2297400                                                                                                  <xx                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                       xxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx            --------->ATHB12                                                  xxxxxxxxxxxxxxxxxxxxxxx            <---------ICU4                                                 --------->AHL20(2) -------           --------->ICU4                                               --------->YAB1xxxxxxxxxxxxxxx           <---------YAB1                               <---------AHL20(2) <---------AHL20(2) <------           <---------ATHB12                  <---------AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      --------->ANAC55(2)                    --------->AHL20(2)        <---------AHL20(2)  <xxxxxxxxx      <---------ANAC55(2)              --------->AHL20(2)          <---------AHL20(2) xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AHL20(2)          --------->AHL20(2) xxxxxxxxxxxxxxx   cgtgaattacttaatgatttgagtaagttattctctgatatttatatttatattctcttaaattgatatttaaataataaatcactgagggtgaaagata  2297500     <---------GLK1(1)     --------->GLK1(1)   <------ZmHOX2a(1) xxxxxxxxxxxxxxsmallRNA(i) ----->ANAC46 ----->ANAC58 ----->ANAC58 ------ANAC55(2) ----->ANAC55(1) ----->ANAC55(2) -------------------TaNAC69(2)                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---TEIL                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            xxxxxx --->CCA1(2)                           ----------->RAV1(1)                                     <xxxxx --->ARR14(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxx -->ARR11(1)                       --------->GLK1(2)                                       xxxxxxxxxx xxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <---------ANAC46 xxxxxx>smallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxx xxxxxx>smallRNA(s2)           <---------HSFB2a(2)                                  <xxxxxxxxxxxxxxxx xxxxxx>smallRNA(le3)          --------->HSFB2a(2)                                <---------YAB1<xxxx xxxxxx>smallRNA(si3)   <---------TOE2(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<xxxxxxxxxxxxxxxxxxxxx >smallRNA(se3)   <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -->ARR14(2) --------->TOE2(3) --------->HSFC1(1)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(se3)   <---------HSFC1(1)                 <----------ID1xxxxxxxxxxxxxxxxxxxxx xxxxxxxx>smallRNA(fl3) <---------TOE1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxx xxxxxxxx>smallRNA(si3) <---------TOE2(3)--------->ZAT6<---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cgtaaggagttccatcgtcaaattcttaggtttctagaatccaacactaccctctgttaaattggtttaagacaaacgttgtttatgaattatgtgtatg  2297600                                                    <---------ANAC58                                                 <---------WOX13(1)                                               -------->HAHB4                                 <------                                              --------->AHL20(2)                              -------                             <---------AHL20(1)--------->ATHB51                           <---------YAB1 xxxxxxxxxxxxxx>smallRNA(l2) --------->AHL20(1)<--------ATHB1         --------->ATHB12   --------->AHL20(1) xxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->ZAT6 <---------ANAC46  <---------ICU4     <---------AHL20(2) xxxxxxxxxxxxxx>smallRNA(i2) --------->ARR11(3)--------->ATHB12       --------->YAB1     <---------AHL20(1) xxxxxxxxxxxx>smallRNA(i2)   <---------ARR11(3)<---------ICU4 -------->ATHB1            --------->AHL20(2) xxxxxxxx>smallRNA(si3)    --------->ARR11(3) <---------ATHB51--------->ATHB51          --------->YAB1 xxxxxxsmallRNA(si3)       --------->AHL20(1) --------->ICU4  --------->ATHB12       <---------ICU4 xxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->AHL20(2) <---------ANAC58 --------->ICU4 --------->ICU4 xxsmallRNA(fl3)           <---------AHL20(1) <---------YAB1 <---------YAB1       --------->YAB1   -- xx>smallRNA(se3)          <---------ARR11(3) <---------AHL20(2)    <---------WOX13(1)  <---------AHL20(2) xxsmallRNA(si3)        --------->AHL20(2)  --------->YAB1  <----------DOF2      --------->AHL20(2)<-   atgcattgttgagaatgttgttagaaaaaaatatttttaatactaaaaataattgcttattgcattattgaatgattagataaataaaaattatatttaa  2297700                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <---------ZAT18                                      <---------LBD16                                     <---------ANAC46                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                     <---------ANAC58                                     <---------ANAC58                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                 ----                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          ------                                  --------->ATERF1(1)                                         ------>MYB46(1)                                  <------NtERF2                                           --------->CCA1(2)                                 <---------SPL7                                           <------ZmHOX2a(2)                                <---------ANAC58                                         <---------ARR11(3)                                <---------bZIP60(2)                                      --------->AGP1                                <---------REM1(1)                  <---------At4g35610   --------->ARR11(3) <-----------GT1                <---------ANAC58                ---------->DOF2         --------->GLK1(1) ---AHL20(2)                   <-----------------------TaNAC69(2)  --------->At4g35610  <---------GLK1(1) -->AHL20(2)   --------->GLK1(2)<---------ANAC46          --------->YAB1    --------->AHL20(2)------- ------->AHL20(2)            --------->ALFIN1      --------------->AGL15  --------->ARR11(3)  ------>MYB83 --------AHL20(2)          <-----------RAV1(1)     <---------------AGL15  <---------ARR11(3)  -------   attaaacaatataagaaaatccaaaaaaactgtggcgtagcgcggatgatcacctagtaatagtaatgaagcggaagataatataactagagatccaacc  2297800                                --------->MYB52(1)                             --------->ANAC46                                                      <-                       <----------DOF2                                <----------ID1               -- ------->GT1          <---------ANAC58                      ------>MYB46(1)                     <---- --->MYB46(3)         <---------ANAC58                      ------>MYB83   --------->DAG2    -------- ->P       --------->YAB1  <-----------GT1                <---------MYB59 ---------->DOF2   --------- -->MYB52(1) *TSS  <---------GLK1(2)    ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-------   ggtgtaataccgatggtaacagatgcttttcacaaaacgactgaaagtggaattgaagaaccaaacttagaagcgaaaaagttttttgatatgttagatg  2297900                                                                                                   <-                                                                                                  <--                                                                                                <----                                                                                                <----      --------->MYB52(1)  ---------->DOF2                                                      <-----    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->LBD16                  -------- --------At4g35610   <-------GAMYB                        <---------LBD16                   xxxxxxxxx ------->At4g35610  <---------MYB46(3)            --------->At4g35610                      <--------- ---TEIL           <---------YAB1                 ----------->RAV1(2)                     xxxxxxxxxxx ->At4g35610     --------->YAB1                   --------->ZAT2                        <---------ANAC58 >MYB52(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------At4g35610------->TEIL       <---------ANAC58 --At4g35610    <---------YAB1   <-----------HVH21<---------ZAT2  <---------YAB1      <-----------GT1   cagcgaagaaaccgatttatgatggttgtaaagagggtcactctcgtttatcagctgcaacgcggatgatgaatataagaacagagtataacttgtcgga  2298000                       --------->At5g28300                   --------->MYB52(1)       xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------ARR14(2) ----------->TGA1 ----ZmHOX2a(1)   ----------->HVH21 -----TOE1(2)   --------->At4g35610 -----TOE2(2)   <---------At4g35610 -NtERF2 --------->ANAC58 ->ETT(1)--------->ANAC46                  <---------AHL20(2)       --------->ANAC58 xxxxxxx>smallRNA(i)  ----------->GT1--------->AHL20(2)             --------->ANAC46 --HVH21 --------->ANAC58            <---------AHL20(2)             --------->ANAC58              <-- xxxxxxxxxxxx>smallRNA(i2)         <---------AHL20(2)              ---------->ID1    ----------->GT1   ggattgtgttgacgcaatagctgacggtaatttgtatatttttatattttttgtatatgatatagttttgacgcaatagagaacagatggtaatttgtat  2298100                                                                                              <------                                                                                           xxxxxxxxxx                                                                                           ----------                                                                                         --------->At4g35610                                                                                         <---------bZIP60(2)                                                                                   ----------->HVH21                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                 <---------ANAC46           --------->ARR11(3)                                                    --------->ANAC55(2)           <---------ARR11(3)                                                  <---------ANAC46          --------->YAB1                                                       <---------ANAC58         <---------YAB1                         --------->YAB1                 <---------ANAC58    xx -------AHL20(2)                                <---------ICU4       xxxxxxxxxxxxxxxx>smallRNA(i)<---   attttttgcatatgatattgtttttatcaaattcagtctaaagttttctataatgacatgtttctgtgtttcaaaactgtttcgcgtgatgaggtgacag  2298200          --------->CCA1(2)         --------->ARR11(3)         --------->ARR11(1)         <---------ARR11(3)         <---------ARR14(2)         --------->ARR14(2)       --------->LBD16      --------------->AGL15      --------->HSFB2a(2)      <---------------AGL15     <-----------------AGL1     <-----------------AGL3       <---------------AGL15     =============================================MADS_MADS     =============================================MADS_MADS     ----------------->AGL3     -------->P     <-----------------AGL2     --------->ANAC58     <-----------------AG       --------->ANAC58     ----------------->AGL1 --------->ANAC46     ----------------->AGL2 --------->ANAC58 <---------GLK1(1)      <---------TOE2(3) --------->GLK1(1)      <---------HSFB2a(2) --------->At4g35610    --------->HSFB2a(2) --------->ZAT2  <-----------------AGL1 <---------ZAT2  <-----------------AGL3                        <---------ANAC58 <---------At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ANAC46 -----RAV1(2)----------->GT1--------->ANAC58        <---------AtMYB61     --------->At4g35610 xxxxxx>smallRNA(i)<----------DOF2--------------->AGL15<---------ANAC46 --------->DAG2 ->HVH21<XXXXXXXXXXXXXXXXXXXXMIR161.1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)       ---------->DOF2 ---ZmHOX2a(1)   =================================MADS_MADS    <---------ANAC58      ------>ZmHOX2a(2)   gagagctcccagatatggttacttttatggaagcaacccataagagtaagtctgatggtgtatttgtgtgcaaaaaagctgagttgatcgccaaaaaatg  2298300  Previous    Next  AGI:  At2g05950.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32050.1); similar to transposon-like ORF [Brassica rapa] (GB:BAA85462.1) Range:  from: 2297813    to: 2298718    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version