Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    ------>ZmHOX2a(1)                                  ------>ZmHOX2a(2)                                  --------->HSFC1(2)                                  <---------HSFC1(2)                                  =========================HOX2a_HOX2a                                 ==========================HOX2a_HOX2a                                 <------ZmHOX2a(2)                                <---------ARR11(3)                                <---------ARR14(2)                                <---------GLK1(2)                                --------->ARR11(3)    <---------YAB1              --------->AGP1  <--------HAHB4             <---------HSFB2a(2)  <---------ICU4             --------->HSFB2a(2)  --------->YAB1         --------->KAN4(2)                                                         --  -------->ATHB1        --------->KAN4(1)           ------>ZmHOX2a(1)                              --  --------->ATHB51      --------->HSFB2a(1)        --------->TOE2(3)                               <-  <---------AHL20(2)    <---------KAN4(1)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxx  -------->HAHB4        <---------HSFB2a(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          ---------- <---------ATHB51      --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxx --------->ICU4        <---------KAN4(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------ANAC46 <---------YAB1        ---------->TaMYB80   <---------ZAT6                               <---------ANAC58 --------ICU4          <---------ARR14(2) --------->YAB1    <---------ATHB12             <---------ANAC58 ------>GT1   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1 <----------DOF2        <-----------GT1 ---->YAB1   --------->AHL20(1) --------->ARR14(2) --------->TOE1(3)              ----------->GT1xxxx   gtaattattaacaaatatactagagaatattctagatccttctatagtattatcctaaaccaatgactttgagtttcaagaagagggttttacttgtaaa  2158300                                                                                                  <xx                                                                                                <xxxx                                                                                               ------                                                                                              xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <-------                                                                                             <xxxxxxx                                                                                             --------                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <---------ANAC46                                                                                         xxxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        ------>ZmHOX2a(1)                                                                                        --------->LBD16                                                                                       xxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <------MYB46(1) ----------->RAV1(2)                                                                      <------MYB83 --------->GLK1(1)                                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     <---------MYB46(3)<xxxxxxxxxxxxx                                                                     <---------AtMYB61xxxxxxxxxxxxxxx                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------AHL20(2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->AHL20(2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->AHL20(1)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------AHL20(1)                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ----------->HVH21--------->WOX13(1)                       --------->ATHB12 <---------GLK1(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->AHL20(1)       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------->AHL20(2)      <---------ATHB12                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<x --------AHL20(2)      <---------YAB1--------->AHL20(2)        <-----------GT1  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->GT1----------->GT1--------->WOX13(1)                   <----------DOF2xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3) --------->ATHB12  --------->ARR11(1) <---------YAB1xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ataaaatgaagtgacaatataatctatcattcatttggattatatatagatttggatgttcttttttacgattggtgttgaagagaattcctgaggtgta  2158400                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------ETT(1)         --------->At4g35610        <---------TOE1(3)                                   ------>MYB46(1)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      ------>MYB83    <----------DOF2                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   ----------->RAV1(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ZAT2 xxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(si3)        --------->ALFIN1   ------>MYB83 xxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --REM1(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->ALFIN1<---------At4g35610       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->HSFC1(1) xxxxxxxxxxx>smallRNA(si3)  --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->HSFB2a(2) xxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------HSFC1(1) xxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------YAB1     <---------LBD16 xxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   < xx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------>MYB46(1)  <----------DOF2<xxxxxxxxxxxx xxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <- x>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxx xxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxx xxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)-------->P   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------RAV1(1)  <---------ALFIN1---------->ID1<---------HSFB2a(2)   gggcttctttaagcttccgaccaagagcaaacgctaatggtggagggactgcattcccaacctgcctatgtttgtcttttatattttctggaaacttata  2158500           ----------->RAV1(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->GLK1(1)        --------->MYB46(3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------GLK1(1)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->LBD16        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->HSFB2a(2)     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------HSFB2a(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ZAT6   --------->ANAC46 <---------AHL20(2)                           --------->At4g35610  <---------LBD16  --------->AHL20(2)                           --------->ANAC58 xxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58 ---------ARR14(2) <---------AHL20(1)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->YAB1 --------GLK1(1)   <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <- xxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->HSFB2a(2) xxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------TEIL              <---------HSFB2a(2)   gctatccggaaacccctgcaattttttttataaaaccaccatttcacttaagagagctatattcataagctaacattacttcaatttccaaaacaaaaac  2158600                                                                 <-----------RAV1(2)                <                                                                xxxxxxxxxxxxxxxxx>smallRNA(si3)   xxx                                                                <------ZmHOX2a(2)     <xxxxxxxxxxxxxx                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<                                                         <---------ANAC55(2)         --------->YAB1xx                                                         ----------->RAV1(2)        xxxxxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ---                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxx                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxx                               --------->ANAC58    <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               --------->ANAC46    --------->AHL20(2)   <----------DOF2<---------YAB1                               --------->ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxx                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR11(3)xxxxxxxxxxxxxxxxxxxx                        ----------->GT1         --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->TOE1(2)      --------->ZAT6  xxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->TOE2(3)--------->TOE2(2)    <xxxxxxxxxxxxxxxxxxxxx ---------DOF2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------GT1<-------TEIL <xxxxxxxxxxxxxxxxx   tctttacacttatattgatgctagatgagtaacaaggaaggaacattagagattttattacctgagatcaggcgcattcacgaacactgataattctatc  2158700              --------->ZAT14              --------->ZAT18             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------At4g35610            --------->At4g35610      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------RAV1(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxsmallRNA(si3)                                        --------->YAB1 -----------HVH21                                         <---------ICU4 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                         -------->HAHB4 xxxx>smallRNA(si3)                                      --------->ICU4 --->ZmHOX2a(1)<---------ALFIN1                        --------->YAB1 xxxxxxxxxxxxxxsmallRNA(si3)                           <---------ICU4 xxxxx>smallRNA(si3)                                  <---------YAB1 xxxxxxxsmallRNA(si3)                     <---------At4g35610                     <---------AHL20(2) xxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->AHL20(2) xxx>smallRNA(si3)      *TSS             <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ZmHOX2a(1)<---------ANAC46           <---------AHL20(2) xsmallRNA(i2)<---------ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <----------DOF2 xxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ctggtcaggatggaagcacactccctcttattctcctaaacttctgcttatgtcttataattatgcttaaaactctttatttattttttgaagaaaatag  2158800                            <---------AHL20(2)                       --------->LBD16                              <---------ICU4                      --------->ANAC55(2)                          --------->AHL20(2)                      <---------ANAC55(2)                          --------->ICU4                <---                  <------ZmHOX2a(1)                                <---------AHL20(2)            ----           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <---------ATHB51              <---          --------------->AGL15                                  --------->YAB1               <------          <---------------AGL15                                --------->AHL20(2)     ----------->GT1          ===========================================================================================         <-----------------AGL1 <---------AHL20(2)   --------->AHL20(2) <-----------GT1       -------   tttatgtgtttactagataaggacccgtgtttattttcttataactaaaatcaaatttaacaaaaaaaaataattaacaaaattgtaagtgtaaattatc  2158900           <---------AHL20(2)           --------->AHL20(2)           <---------AHL20(1)           --------->AHL20(1)                                      --------->AHL20(2)       <---------AHL20(2)                                       --------->ATHB12    ----------->GT1                                         --------->ATHB12  ---------->DOF2                                           --------->ATHB51            ----------->GT1 -------DOF2                                                -------->ATHB1         --------->YAB1 ----------->AGL15         <-----------GT1                 --------->AHL20(1)     <---------YAB1 ------------AGL15   <-------GAMYB                         --------->ICU4       <---------ICU4 ---ARR11(3)<---------AHL20(2)   <-------GAMYB             <---------ATHB51    --------->ICU4 ============MADS_MADS<---------MYB52(1)                   <---------AHL20(2)--------->YAB1 -->ARR11(3)--------->AHL20(2)  <-----------RAV1(1)        <---------YAB1 <----------DOF2  --------->YAB1   ttttaaaagttaatttatttttcggttattttctctgttgtattgttttcttactactaaaattattgattaaaaactttcattatcatatagtaataac  2159000                                                                                     <---------AHL20(2)                   --------->ARR11(3)                                               --------->AHL20(2)                   <---------ARR11(3)                                            --------->YAB1                   --------->AHL20(1)                                           <---------YAB1                   <---------AHL20(1)                                         --------->YAB1       --------->AHL20(2)                                                    <-------TEIL       <---------AHL20(2)                                                --------->ARR11(3)   --------->AHL20(2)                                                    --------->AHL20(1)   <---------AHL20(2)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(1)  <---------AHL20(2)             <---------ATHB12     ----------->GT1    <---------ARR11(3)  --------->AHL20(2)     --------->ANAC55(2)   <---------------AGL15--------->AHL20(2)  <---------AHL20(1)     <---------ANAC55(2)  <-----------------AG  <---------AHL20(2)           ----   tcaaattatttaaatgaaaaatatatcacatatcaataactcttggtatacttatatggaaaaactaaaattaaaaatattcatcataaaattgtcgaat  2159100                                                                            --------->bZIP60(1)                                                                            <---------bZIP60(1)                                                =========================HOX2a_HOX2a      <---------ARR11(3)                                             ------>ZmHOX2a(2)       --------->AHL20(2)--------->AHL20(2)                                             ============================HOX2a_HOX2a XXXXXXXXXXXXXXXX                                         <---------YAB1 >>>>>>>>>>WRKY6     --------->ANAC58                                       --------->YAB1   >>>>>>>>>>WRKY11    --------->ANAC46    -----                               --------->AHL20(2) ---------->DOF2 ------>ZmHOX2a(1)<---------YAB1 <--                            <---------AHL20(2)  <------ZmHOX2a(2) <----------DOF2--------->ANAC55(2)-              --------->AHL20(2)      --------->ICU4   --------->WRKY45     --------->ANAC58   <----- ----->YAB1   <---------AHL20(2)    ---------->DOF2    --------->WRKY38(1)<-----------GT1 --------->ARR11(3)   gaaaacaaaatagttttaaattagacatattaaaaatataaagatgatcgatcaaagttgactaaatccttttaaatcacgacacatgataaaatctttg  2159200  Previous    Next  AGI:  At2g05740.1    Description:  pseudogene, fragment of cytosine DNA-methyltransferase, blastp match of 79% identity and 1.2e-21 P-value to GP|10257413|gb|AAG15406.1||AF229183 cytosine-5 DNA methyltransferase MET1 {Zea mays} Range:  from: 2158242    to: 2158724    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version