Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      ------>ZmHOX2a(1)                    ------>ZmHOX2a(2)                    =========================HOX2a_HOX2a                    <---------HSFC1(2)                    --------->HSFC1(2)                   <------ZmHOX2a(2)                   ==========================HOX2a_HOX2a                  --------->ARR11(3)                  <---------GLK1(2)                  <---------ARR14(2)                  --------->ARR14(2)                  --------->AGP1               <---------HSFB2a(2)               --------->HSFB2a(2)                                                   --------->AHL20(2)           --------->KAN4(2)          ------>ZmHOX2a(1)                              --------->AHL20(1)          <---------KAN4(1)          --------->TOE1(3)                               <---------AHL20(2)          <---------HSFB2a(1)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxx          --------->KAN4(1)        <---------YAB1                            ----------->GT1          --------->HSFB2a(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------KAN4(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------ANAC58         ---------->TaMYB80   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ANAC58   -------         --------->ARR14(2)   <---------ZAT6      <----------DOF2          <---------ANAC46 ---------         <---------ARR14(2) --------->YAB1    <---------ATHB12           <-----------GT1 xxxxxxxxxxxx ------->AHL20(1) <---------ARR11(3) --------->TOE2(3)              ----------->GT1xxxxxxxxxxxxxxxxxx   atatactagagaatattctagatccttctatagtattatcctaaaccaatgactttgagtttcaagaagagggttttacttgtaaaataaaatgaagtga  2153000                                                                                    <xxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 --------->ALFIN1                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               --------->ALFIN1                                                                               <---------REM1(1)                                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <---------ANAC46                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          ------>ZmHOX2a(1)                                                                          --------->LBD16                                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        <------MYB83 --------->GLK1(1)                                                        <------MYB46(1) ----------->RAV1(2)                                                       <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       <---------AtMYB61xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ATHB12                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ATHB12                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxx         <---------YAB1                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ------  <---------AHL20(2)                                --------->ATHB12 <---------GLK1(1)    <xxxxxxxxxx --------->AHL20(1)                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <----------DOF2 --------->AHL20(2)                                <---------YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(1)    --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxx x>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) < ---->HVH21--------->WOX13(1)                    <-----------GT1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<x -->GT1--------->WOX13(1)                   <----------DOF2xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----- xxxxxxxxxxx>smallRNA(si3)      --------->ARR11(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxx xxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------   caatataatctatcattcatttggattatatatagatttggatgttcttttttacgattggtgttgaagagaattcctgaggtgtagggcttctttaagc  2153100                                              ------>MYB46(1)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            xxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>MYB83          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----------->RAV1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ZAT2   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------>MYB83                                           ---- <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       -------->P                                         <------- xxxxxxxsmallRNA(se3)  --------->ALFIN1   ------>MYB46(1)                                    <xxxxxxx xxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    -------- xx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               --------->ANAC46 xsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------LBD16 xsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <---------ARR14(2) >smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->HSFC1(1)<---------HSFB2a(2) --->At4g35610--------->ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------HSFB2a(2)  --------- xxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxsmallRNA(si3) <-----------RAV1(1)  <---------ALFIN1---------->ID1--------->HSFB2a(2)--------->LBD16 ---------ETT(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------YAB1      <---------HSFC1(1)--------->HSFB2a(2) xxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------LBD16<---------GLK1(1) ---TOE1(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx   ttccgaccaagagcaaacgctaatggtggagggactgcattcccaacctgcctatgtttgtcttttatattttctggaaacttatagctatccggaaacc  2153200                  --------->MYB46(3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)     <---------AHL20(1)     <---------AHL20(2)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->AHL20(2)          ---------->DOF2 ------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ZAT6 --GLK1(1)   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58 xxxxxxxxxxxxxsmallRNA(si3)   --------------->AGL15--------->At4g35610 ->GLK1(1)  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58                     xxxxxxxxxxxxxx >ARR14(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1                         <----------DOF2 -ARR14(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------TEIL              --------->HSFB2a(2) xxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------HSFB2a(2)   <xxxxxxx   cctgcaattttttttataaaaccaccatttcacttaaaagagctatattcataagctaacattacttcaatttccaaaacaaaaactctttacacttata  2153300                                                                                                    -                                                                                                    <                                                                                                   <x                                                                                                   <x                                                                                                  ---                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <------ZmHOX2a(1)                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          --------->ICU4                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx                                                   ------>ZmHOX2a(2)                  <-----------HVH21                                                  <------ZmHOX2a(2)                   <xxxxxxxxxxxxxx                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-----------RAV1(2)                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxx                                           ----------->RAV1(2)                      ------>ZmHOX2a(1)                                           <---------ANAC55(2)            xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->ANAC58    --------->AHL20(2)                --------->YAB1xxxxxxxxxxxxxxxx                 --------->ANAC46    <---------AHL20(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->ANAC58 <---------ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <--              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          ----------->GT1         --------->ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->TOE2(2)      --------->ZAT6  xxxxxxxxxxxxxxxx>smallRNA(i)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------GT1  <----------DOF2<---------YAB1 xxxxxxxxxxxxx xxxxxxxxx>smallRNA(i2)    --------->TOE2(3)--------->TOE1(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)- xxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttgatgctagatgagtaacaaggaaggaacattagagattttattacctgagatcgggcgcattcacgaacactgataattctatcctggtcaggatgga  2153400          *TSS <---------ALFIN1 -------->ZAT18 ---------ZAT18 xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>At4g35610 xxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(si3)                                          --------->ANAC58 xxxxxxxxxxxsmallRNA(fl3)                                          --------->ANAC46 xxxxxxxxxxxxxsmallRNA(si3)            <------ZmHOX2a(2)    --------->AHL20(2)                   ---- xxxxxx>smallRNA(si3)                  =========================HOX2a_HOX2a      <---------ARR11(3) xxxxxxxxsmallRNA(si3)              ============================HOX2a_HOX2a   --------->AHL20(2) <--- xxxxxx>smallRNA(si3)               ------>ZmHOX2a(2)    ------>ZmHOX2a(1)<---------YAB1 <---------WOX13(1) xxxx>smallRNA(si3)           --------->YAB1   >>>>>>>>>>WRKY6     --------->ANAC58     <------------CBF -------At4g35610            --------->ICU4    >>>>>>>>>>WRKY11    <---------bZIP60(1) --------->ATHB12 xxx>smallRNA(si3)    --------->AHL20(2) ---------->DOF2 <----------DOF2--------->ANAC55(2)--------->YAB1 xxxxxxxxx>smallRNA(si3)   ---------->DOF2    --------->WRKY38(1)  --------->bZIP60(1)<---------YAB1 -------->ZAT14 <----------DOF2 <---------YAB1--------->WRKY45   <-----------GT1 --------->ARR11(3)   agcacactccctcttattctttaaaaatataaagatgatcgatcaaagttgactaaatccttttaaatcacgacacatgataaaatctatgattgataac  2153500                <-----------GT1                             ----------->ARR10             <---------ICU4                             --------->YAB1            <---------AHL20(2)                         <---------AHL20(2)            --------->AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->YAB1                              --------->AHL20(2)          --------->TOE2(3)                        <---------AHL20(2)        <---------YAB1                             --------->YAB1            --------->YAB1    --------->TOE2(3)                              --------->AHL20(2)      --------->AHL20(2)    --------->YAB1                          ------>ZmHOX2a(1)  --------->CCA1(2)   <---------DAG2   <---------YAB1               --------->ANAC58<---------ICU4--------->ARR11(3)   <----------DOF2---  <---------TOE2(3)             --------->ANAC58--------->YAB1<---------ARR11(3)<-----------GT1<----- ----------->AGL15              <----------ID1 --------->AHL20(2)       --------->TOE1(3)   --------- ------------AGL15              ----------->GT1<---------AHL20(2)       --------->TOE2(3)   <xxxxxxxx   tatttatgttaatattaattactaattttgagaaacgaaaaacatcctattaattatataataagatatgtttcccttaaaataactttttctatcatca  2153600               --------->ANAC58               --------->ANAC58               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ANAC46 --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ------->GAMYB         <xxxxxxxxxxxxxxxxsmallRNA(s)                             <---------AHL20(2)  --------->LBD16            <-------MYC3                                            <---------AHL20(2) --------->ANAC46       <-----------HVH21                                        <---------YAB1 --------->ANAC55(2)<xxxxxxxxxxxxxxxxsmallRNA(s)      <---------------AGL15      <---------AHL20(2) ------>DEAR3(1)--------->MYB46(3)    --------->WOX13(1)                        <---------AHL20(2) ----ALFIN1  --------->MYB46(3)<-------TEIL           ------>ZmHOX2a(1)  ----------->GT1 >YAB1--------->MYB46(3)<-----------TGA1              --------------->AGL15   <---------YAB1        < xxxxxxxxxxxxsmallRNA(si3)   ------->MYC3--------->YAB1             ----------->HVH21--------->AHL20(2)   cctccgtaaccatcaacaagcaccatcgtcacatgcataacaatcacatgttactcctatattttgtagtatgacatgttatttttattaaatgaaattg  2153700                                                                                                <----                                                                                            <--------                                                                                           <---------AHL20(1)                                                                                           --------->AHL20(1)            <---------YAB1                                                               <---------AHL20(2)       <---------ANAC58                                                                 --------->AHL20(2)       <---------ANAC58                                                              <---------AHL20(2)    <----------DOF2                <---------YAB1          <---------YAB1           --------->AHL20(2) ---------->ID1                 <---------MYB52(1)       <---------AHL20(2)         --------->ICU4 -----------GT1               ----------->GT1  --------->ATHB12       <---------ANAC46 <---------YAB1   tttttcctttcgttctcattgtctctcttacgtcgttaatattccagtttgatttgtttttatttttggattttgtgtagttagtatttattatatattt  2153800                                                  <---------AHL20(2)                                              --------->MYB52(2)                                         <---------TOE2(3)               <---------ANAC58         <---------YAB1           <---------AHL20(2)     <-----------GT1 <---------ANAC58       <-----------GT1          <----------DOF2   --------->AHL20(2)<---------ARR14(2) -------GT1                   ---------->ID1<--------P<---------ICU4--------->ARR14(2)           ---- -AHL20(2)       <---------MYB46(3)      <---------TOE1(3)         <---------GLK1(1)           ------   tccttcaaattacaataagttgttgtatgtttgtcttttatttaaggttagtttaatttttactcatggatatttgcttattttcatgagatttaaaaca  2153900  Previous    Next  AGI:  At2g05730.1    Description:  putative cytosine DNA-methyltransferase, fragment/pseudogene, blastp match of 80% identity and 2.3e-23 P-value to GP|10257413|gb|AAG15406.1||AF229183 cytosine-5 DNA methyltransferase MET1 {Zea mays} Range:  from: 2153047    to: 2153410    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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