Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->MYB52(1)                                                 ----------->HVH21                    ------>MYB46(1)                                               --------->ZAT2                         ------>MYB83                ------>MYB46(1)                <---------ZAT2                       <---------MYB59                ------>MYB83           <---------ARR11(3)                  <---------YAB1              ------->GAMYB--------->ANAC58    <---------At4g35610      --------->GLK1(2)             --------->MYB46(3)        --------->ARR11(3)               <---------ARR14(2)           <-----------GT1 --------->ANAC58    ----------->RAV1(2)      --------->ARR14(2) -ARR10 <---------ZAT6 <---------ANAC55(2)     --------->At4g35610     <---------GLK1(2)           --   tgcaccattagagtaaccaactaatacataagaaacacaaacatcttgcagctgaagcctaaaaccaatacaagaatctgataaaaccaaactgaaactt  2146800                                                           <---------ARR11(3)                                                          <---------GLK1(2)                                                         <------NtERF2                                                        ------>NtERF2                                                       <---------ATERF1(2)                 --------->TOE2(2)                     --------->ATERF1(2)                         <-                 --------->TOE1(2)              <-----------GT1                                   ---                ----------->RAV1(2)          ----------->GT1                                ---------  --------->AHL20(2)            ------>ZmHOX2a(1) <---------ANAC58                          <-------- ------->YAB1  ------->TEIL   ----------->RAV1(2) <---------ANAC58         ------->TEIL    <---------GLK1(2)   gtcataaattccatatgaacctgagagtaatctcctgtgtctgaatgaagtaacttgccagcatcttcttccatatgaaccctagtaataccaaaatctc  2146900                                                        ----------->GT1              XXXXXXXXXXXXXXXXXXXX>MIR390A/B          ------>ZmHOX2a(2)            ------>MYB46(1)                           ============================HOX2a_HOX2a            ------>MYB83                             =============================HOX2a_HOX2a          <---------MYB111(1)                        --------->CCA1(2)          --------->MYB46(3)       <---------YAB1    <------ZmHOX2a(2)          <---------MYB46(2)    --------->GLK1(2)   <---------ARR11(3)          <---------MYB55(2)    <---------ARR14(2)  --------->ARR11(3)         --------->ANAC46   ----------------->AG    --------->ARR14(2)       --------->AtMYB61  <---------ARR14(2)        --------->GLK1(2)       <---------ALFIN1   --------->ARR14(2)        <---------ARR14(2)      --------->MYB46(3) --------->GLK1(1)          <---------AGP1    --------->ANAC46     --------->KAN4(1)          --------->AGP1   --------->ZAT18      <---------KAN4(2)           <---------ARR14(3) --------TOE1(2)        ---------->TaMYB80--------->TOE1(3) --->ZmHOX2a(1)       <------ZmHOX2a(1)   --------->TOE2(3)  --------->AHL20(2) >ARR11(3)<---------MYB111(2)   --------->ARR14(2)  --------->ARR14(3) -ARR11(3)--------->AtMYB61 ----------------->AGL1----------->ARR10        ------>ZmHOX2a(1)  <------   ctatgtccaccaccaaactcaagaggaatatccaaatctgataaccttgaagaagatctggataaaaatactgcttcctatcgaatttagacttaagaga  2147000                                       *TSS                                     <---------AHL20(2)                                    --------->AHL20(2)                                <----------DOF2                              ------>MYB46(1)                              ------>MYB83                        <---------ATHB12    --------->GLK1(1)                   --------->TOE2(3)<---------AHL20(2)   <----------DOF2                        <----  --------->YAB1   ------->GAMYB<---------DAG2       <----------DOF2                         <-------  <-----------GT1-------->P  <---------ALFIN1    <----------DOF2              <----------DOF2-------- ----ID1  ---------->DOF2   ------->GAMYB   <---------GLK1(1)    ------>ZmHOX2a(2)   ----------->TBP   caaatcacaattcaaagctaaccccaataacccacttttttaatagatttcctttctttctttctgatccatctcgtttactttgctataaataagagct  2147100                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                         --------->AGP1                                                         <---------AGP1                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                         <---------ARR14(3)          --------->HSFB2a(1)                            --------->ARR14(3)        <---------ALFIN1                                 --------->ARR11(3)   --------->ANAC58         --------->ZAT14              <---------ARR11(3)   --------->ANAC58         <---------ZAT14           --------->HSFB2a(2)                    -------- ------DOF2                 --------->ZAT18           <---------HSFB2a(2)                <---------PCF2 --ARR11(3)                 <---------ZAT18           --------->HSFC1(1)          ------------>CBF ->ARR11(3)       ---------->ID1       <-----------HVH21<---------CCA1(2)       <-----------GT1 -----   ttggtaagccaaaccttcttgtcttctaagtgaactagtcttgtcacgagcttcttctagatcttgtttcaaaagtttgtttataccaatgggtccaaca  2147200                                                                                               ------                                                                                          <---------At4g35610                                                                                          --------->At4g35610                                                         <---------ARR14(2)          --------->ARR11(3)                                                --------->At4g35610                --------->ICU4                                             <---------ZAT2    <---------ANAC46    --------->HSFB2a(1)                                             --------->At4g35610      --------->ARR14(2)<-----------RAV1(2)                                             <---------At4g35610      <---------ARR14(2)<---------HSFB2a(2)                                  <---------AHL20(2)     --------->ARR14(2)        <---------KAN4(1)                               <---------ARR11(3)       <------ZmHOX2a(1)          --------->KAN4(1)                               --------->ARR11(3) <----------DOF2     --------->GLK1(2)------>ZmHOX2a(2) --->RAV1(1)           <-----------GT1---------->DOF2 <---------TOE2(3)            <---------HSFB2a(1) -->GAMYB        ----------->GT1 --------->AHL20(2)   <---------TOE1(3)           <---------KAN4(2)   gagcttagagaggctagaatagaaattaccaaagattttataaagagagctgctctaaggattcagcgtgaaaatcggcgaaggaatgatccagatgaag  2147300                                                                        <---------ARR11(3)                                                                 <---------LBD16        <--------P                                                           <---------AHL20(2)  ------>ZmHOX2a(1)                                                        ----------->GT1 --------->ARR11(3)         <-                                   ---------->DOF2     --------->HSFB2a(2)------>ZmHOX2a(2)    ------                         ---------->DOF2               >>>>>>>ZML2   <---------KAN4(2)<---------MYB46(3) ----->GT1            <----------DOF2                  <---------HSFB2a(2)===========================   ataaaaatgctgagactaaattggctttaaagcattgtaaagacatggttcttggttctagtaaatttggggatgatcgtcctcttactggttgctcctt  2147400                                                          --------->ATERF1(1)                                                         <---------ATERF1(1)                                                         <------MYB46(1)                                                         <---------At4g35610                                                         <------MYB83                                                         --------->At4g35610                                                        --------->ALFIN1       ----------->GT1                       ------>ZmHOX2a(1) --------->ANAC55(2)    <---------TOE1(2)--------->ARR14(2) <---------ANAC55(2)   --------->ANAC55(2)  --------->TOE2(3)                                       - ----------GT1     <-----------HVH21     <---------ARR14(2)--------->ALFIN1                   ------- >ZmHOX2a(1)      --------->bZIP60(2)  <---------ANAC58 <---------AtMYB61--------->ANAC46  ---------- =HOX2a_HOX2a     --------->ANAC46     <---------ANAC58 <---------DEAR3(1)     <---------GLK1(2)   --   atcacgagatggaaaaatactcgtcacatgttctcttagtggggttcctaaattgtgggaggtgcctcaagttacaaacaagattgttgtcttgaaaggt  2147500                                                                                  --------->CCA1(2)                                                                                 --------->ARR11(3)                       --------->ZAT14                                           <---------ARR11(3)        --------->ANAC55(1)                                                      --------->ARR11(1)        <---------ANAC55(2)                                                      <---------ARR14(2) --------->DOF2       <---------ZAT6              --------->ANAC58               --------->ARR14(2) ---->GT1  ------->TEIL<---------ZAT18      ------->TEIL                       ----------->ARR10 >DOF2  --------->ANAC55(2)    <---------DEAR3(1) --------->ANAC58           ---------->DOF2        < ------->ICU4    <---------REM1(1)       <---------YAB1              ------>ZmHOX2a(2)   --------->MYB52(1)   cataaagaacatgtaactgatgtagtgttctcgtctgtggatgatgaatgtctagcaactgcttctactgatcgaactgaaaagatatggaaaacggatg  2147600                                         --------->ANAC58                                         --------->ANAC46                                <---------WRKY38(1)                               <------ZmHOX2a(2)                                         <---------WRKY12                              <---------ARR11(3)          <-----------HVH21             --------->SPL7                              --------->ARR11(3)         --------->ANAC58             --------->LBD16                        --------->WOX13(1)               --------->ANAC58           <---------LBD16             <---------------AGL15       --------->ANAC58--------->ANAC46          ------>NtERF2      --------->HSFB2a(2)     --------->ARR14(2)<---------ANAC58             --------->At4g35610      <---------HSFB2a(2)     <---------ARR14(2)<---------ANAC58       <---------ZAT6--------->HSFB2a(2) ---------ALFIN1 ---------->DOF2------>ZmHOX2a(2)       --------->MYB46(3)   <---------At4g35610   <-   gaacacttctacaaacttttaaaggtcattcagatcgtcttgcacgcattgcattccacccgtcatagtcgtagtgttgagatgcctccggacaacgagt  2147700  Previous    Next  AGI:  At2g05715.1    Description:  glutamyl-tRNA(Gln) amidotransferase B family protein, similar to SP|O30509 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT subunit B) {Bacillus subtilis}; no suitable start codon was identified. This may be a pseudogene. Range:  from: 2146544    to: 2147039    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g05720.1    Description:  transducin family protein / WD-40 repeat family protein. similar to EMB2776/LIS (LACHESIS), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G41500.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64891.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23349.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 2147189    to: 2148212    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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