Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <-------TEIL                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            <---------PCF2                                            --------->TCP20                                           <---------DEAR3(2)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                        ------->MYC3                                        <-------MYC3                                       <---------O2                                       --------->O2                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                 <---------ETT(1) ----------->GT1                              xxxxxxxxxxxxxxxx>smallRNA(s)                              xxxxxxxxxxxxxxxx>smallRNA(i)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <----------DOF2--------->ALFIN1                                          xx                  <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xx                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             xx               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxx              <---------DAG2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------MYB52(1)xx              <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s) ----------->GT1        <xxxxxxxxxxxxxxxxxxx        <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------DAG2              xx    ---------->DOF2   <-----------GT1 xxxxxxxxxxxxxxxx>smallRNA(s)     <----------DOF2  --------->TOE2(3)   aacaaataaaggatagctttattatttcctttcttccgacaacgtgggtccatggttattttgtaacaaaaaactttatctctgctagtttcttaatttg  2141000                                         <---------AHL20(1)                                       <---------YAB1                                              xx                               <---------AHL20(2)                                                  xx         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     xxx         <------MYB46(1)       --------->AHL20(2)                                              xxxxxx         <------MYB83        <----------DOF2        --------->AHL20(2)                         xxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------AHL20(2)                             xxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)                              xxxxxx     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------YAB1                                      <------   <---------AHL20(2)       --------->TOE2(3)  --------->AHL20(2)                            <xxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(2)                                       <------- xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(1)                                       <------- xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)--------->AHL20(2)                 xxxxxxxxxxxxx xxx>smallRNA(se3)       <-----------GT1 <---------AHL20(2)                             xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------AHL20(2)<---------AHL20(2)                 xxxxxxxxxxxxx xxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->YAB1   <---------ANAC46 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)   --------->AHL20(2)      <----------DOF2 <---   tatgttttatttggttatctactaatattacctttaattttattattttttaaatttaaaaatatagaatgatatatgtcaaacttttgtgtgatgcttt  2141100       <---------ANAC46       <---------ANAC58       <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------AtMYB61 ----------->HVH21 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->AHL20(1) ----DOF2                                                 <---------AHL20(1) xxxxxxxxxxxxxxxxsmallRNA(fl3)--------->WRKY38(1)        <---------------AGL15           <----------- --ANAC58       --------->YAB1--------->WRKY12         --------->AHL20(2)    <-----------GT1 --ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------YAB1     --------->AHL20(1) xxxxxxxxxx>smallRNA(le3)     --------->WRKY45 <---------AHL20(2)        <---------AHL20(1) xxxxxxxxxx>smallRNA(i2)   --------->ALFIN1  --------->AHL20(2)          <---------ARR11(3) xxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------TOE2(3)     <----------DOF2 ------ANAC46--------->WOX13(1)<---------WRKY18(1) <---------YAB1        --------->AHL20(2)      ----   tgtgtgatggtgtgtcattcatatggagagtgttgaccaattttcatatatatatgattatatattaagaaactatatattacgttgtctttttcaaaca  2141200                                                                            -------->HAHB4                                              <---------AHL20(2)         --------->YAB1                                              --------->AHL20(2)  <---------AHL20(2)                                             --------->AHL20(2)<---------AHL20(1)                                        --------->AHL20(2)     --------->AHL20(1)                                    --------->AHL20(2)       <---------AHL20(1)                                    <---------AHL20(2)       --------->AHL20(1)                                    <---------ICU4          --------->AHL20(2)                                    --------->ATHB51    --------->AHL20(2) <---------YAB1                                <---------AHL20(2)     --------->YAB1  <---------AHL20(2)                                --------->AHL20(2)    --------->AHL20(2)<---------YAB1                     <---------AHL20(2) <---------AHL20(2)--------->AHL20(2)--------->YAB1          -          <---------YAB1      --------->ANAC55(2)  --------->AHL20(2)  --------->AHL20(2)      ------ ------AGL1      <---------AHL20(2)<---------YAB1 <---------AHL20(2) <---------YAB1----------->GT1<-- ------->GT1    --------->AHL20(2) --------->ICU4 --------->AHL20(2)<---------AHL20(2)    -----------   ggtaaaaatgttatgagatttatttgatttttaagtaattatttaaattaaaataaataaaaatatatattattttaataataggggctaaatagaaatt  2141300                <---------ANAC58                <---------ANAC58                       --------->ARR11(3)                        ----             <---------DEAR3(1)         <---------ANAC46          <---------ANAC58            -------        --------->ALFIN1                --------->TOE2(3)         <---------ANAC58            -------   <---------ANAC46     <---------AHL20(2)             <---------ARR11(3)                     ------- -------->ALFIN1<---------ANAC46        ----------->GT1<---------AHL20(1)              <------------CBF --->ICU4   --------->At4g35610       --------->MYB52(1) --------->KAN4(2)            --------->ATHB12 -------ANAC46 <------NtERF2     --------->AHL20(2)    --------->AHL20(1)       <---------WOX13(1)--- >GT1<------ZmHOX2a(1)  --------->AHL20(2)          --------->AHL20(2)         <------------CBF *TSS   atgtggaggagaggggctgcgtagattaaaatccaaaaaataccgtaaacaaaaaaaaatattcccttgcgagagagggaagattgacttattggcacgc  2141400                                                                                    --------->ARR14(2)                                                                               <-------TEIL                                                                         --------->TGA2(2)                                                                        <-----------TGA1                                                                        <-----------HVH21                           --------->ANAC46                            <---------bZIP60(1)                           --------->ANAC55(1)                         --------->TGA2(1)                           --------->ANAC58                            <---------TGA1a                           --------->ANAC58                            --------->TGA1a                         <---------ALFIN1                              <---------TGA2(1)=============                        <---------REM1(2)                            ------>NtERF2  <---------ARR11(3)                       <---------ALFIN1                             --------->DEAR3(1)  ------>ZmHOX2a(1)  <---------STY1(1)   <---------REM1(2)                     --------->YAB1  --------->At4g35610 ----->DEAR3(1)  <---------ANAC58                       <---------ICU4 --------->bZIP60(2)         <- -->ANAC46       <---------ANAC58                       --------->YAB1 --------->bZIP60(1)      ----- -->ANAC58    <---------MYB52(1)                        -------->ATHB1 <---------O2 <---------ARR14(2) -->ANAC58  <---------ANAC58                           <---------ATHB12--------->O2xxxxxxxxxxxxxxxxxx --->NtERF2 <---------ANAC58                         --------->WOX13(1)--------->ANAC46 =============   agccctaggcattttcgtttcgtctccacacgcctctctctctctctcgcttcttcaatcattcatcactccgacgtcagattcaaaatcctccatgatc  2141500                                                               <---------HSFB2a(2)                                                               --------->HSFB2a(2)                                                             --------->At4g35610                                                             <---------At4g35610                                                      ------->TEIL                                                      --------->ARR14(2)                          <--                        <---------ARR11(3)            <---------ARR14(2)                     <-------           --------->WOX13(1)                    --------->At4g35610            <---------ICU4<------ =====HOX2a_HOX2a    --------->TOE1(3)          --------->GLK1(2)    <---------ANAC58       <-------- -----ZmHOX2a(2)     --------->TOE2(3)          <---------ARR14(2)   <---------ANAC58   ------->TEIL- ->ZmHOX2a(2)<---------ATHB12                   <---------ARR11(3)   ----------->GT1 --------->ANAC55(2) xxxxxxxx>smallRNA(si3)<---------CCA1(2)        --------->ARR14(2)   <---------ANAC46<---------ANAC55(2) ==HOX2a_HOX2a       <---------DAG2       <-----------HVH21 ------->TEIL        --------->YAB1-------   gatcccaattgatcaatcaataaccttatcttcttcatcttctctgtcagtatctgaatctgcatctggaagcgtgatttcatcatcatgtatttaaccg  2141600                                                                              <-----------GT1  <---------At4g35610                                               <------ZmHOX2a(2) --------DOF2                <---------ZAT2                        <---------ARR14(2) --At5g28300                 --------->At4g35610                   --------->ARR14(2) ------MYB.PH3(1)            <---------At4g35610                   <---------MYB52(1) ---GT1 <---------At4g35610  --------->ZAT2                  <----------DOF2<-----------GT1 -------->REM1(1)    <---------ATHB12                     <-----------GT1  <-----------GT1  <-------- -->MYB46(3)     ------>ZmHOX2a(1)                    <----------DOF2------>ZmHOX2a(2) <---------MYB52(1)   cttcatcttccgcttcttcctccatcatccgagctgcttcttctcgctcttcttctcttttctctttccgatcggttttatctccctccgtttcatctac  2141700                              --------------->AtSPL8                              --------------->AtSPL3                           <----------DOF2                          ------>ZmHOX2a(2)            <---------DEAR3(1)                         <---------RVE1(1)           <-----------HVH21                         <------ZmHOX2a(2)           --------->LBD16                        --------->ARR11(3)          --------->ANAC46                        <---------ARR14(2)          <---------ANAC58                               <-       <---------CCA1(2)<---------AGP1 --------->ARR14(2)                    --------->ANAC46      --    <---------MYB52(1)  <---------ARR11(3)          <---------ANAC58         --------->ANAC58    <---   <-----------HVH21    --------->ARR14(2)      <----------DOF2              --------->ANAC58    <--- -At4g35610            <---------CCA1(2)   ----------->RAV1(2)        <----------DOF2      <---------MYB52(1)   ttctccgtcgtctcttctcgctcgtagatcttttggtaccatttcccctgctttccgtcgctggagccattcctttcactcgaaaccatctccgtttcgc  2141800                                                                                      --------->ARR11(3)                                                                                   <---------WOX13(1)                                                                                 --------->ATHB12                                                 --------->HSFC1(2)             <---------YAB1                                                 <---------HSFC1(2)          <---------ARR14(2)          <------ZmHOX2a(2)                      --------->HSFB2a(1)         <---------AGP1        <---------At4g35610                      <---------HSFB2a(1)         --------->ARR14(2)        --------->At4g35610                     <-----------ARR10      --------->ARR11(3) --------ALFIN1                     ------>ZmHOX2a(2)                  <---------ARR11(3)   <-------- ------->REM1(1)                  <---------ARR11(3)                  --------->CCA1(1)     <-------- --------HVH21        <-----------GT1      --------->LBD16            --------->RVE1(1) ------>ZmHOX2a(2) -------DOF2   <---------At4g35610--------->ARR11(3)           ----------->GT1 ------>ZmHOX2a(2)   ttcacctctcagatcagagctgtttctccagtcttagatcgtctccagagaaccttctcttccatgggtaaaatatctcgatctgattgatctagcttga  2141900  Previous    Next  AGI:  At2g05710.1    Description:  aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative. Identical to Aconitate hydratase 2, mitochondrial precursor (ACO2) [Arabidopsis Thaliana] (GB:Q9SIB9;GB:Q8L784); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.2); similar to unnamed protein product [Vitis vinifera] (GB:C Range:  from: 2141396    to: 2146675    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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