Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------ANAC58                          <--------HAHB4           <---------ANAC58                <---------ZAT14         <---------ARR11(3)                --------->ZAT14         --------->ARR11(3)               --------->ALFIN1                  <---------AHL20(2)  ----------->HVH21                    <---------DEAR3(1)                   --------->AHL20(2) ---------->GT1                        <---------ANAC58                     --------->AHL20(1) ---------bZIP60(2)              <---------AHL20(2)  <---------ICU4         <---------AHL20(1) ---------bZIP60(1)  <------ZmHOX2a(1) <---------ANAC58         ------>ZmHOX2a(1)                   < ---------O2  --------->ATHB12  --------->YAB1      <---------YAB1       --------->YAB1   <---------ZAT6 -------->bZIP60(1)<---------TOE2(3)  <---------LBD16--------->YAB1   <----------DOF2   ----------->GT1   tgatgtgacaatgtcttgatttaggatttttctataatattgcggtgcagaactatcattactctccttctcctttaataaattgtggattagtgaaaaa  1976500                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                     <---------TOE2(3)        -------                                                               <---------AHL20(1)          <---------AHL20(2)                                                               --------->ARR11(3)         <---------WOX13(1)                                                               --------->AHL20(1)       <---------AHL20(2)                                                               <---------ARR11(3)       --------->ATHB12                                                              <---------AHL20(2)       <---------AHL20(2)                                     <---------TOE2(3)    <---------AHL20(2)         --------->TOE2(3)          ----------->GT1   <---------MYB52(1)            --------->AHL20(2)         --------->YAB1 ---------YAB1 ---------->DOF2 <---------YAB1  --------->AHL20(2)    <---------TOE1(3) --------->AHL20(2)   ttgttatagagaatgaaaaaagaatgaaacgttatgtttgatgtttcaatattatgtcatataaatatttttaggttttctatgtaatattaattgatta  1976600                                      --------->ATHB12                                     <---------YAB1                                    <---------ARR11(3)                                    --------->ARR11(3)                                <---------AHL20(2)                                                 --    <---------WOX13(1)         <---------AHL20(2)                                                 <--  --------->ATHB12             --------->AHL20(2)                           --------->DAG2       xxxx ------>ATHB51              <---------ICU4                         <---------------AtSPL8  --------->YAB1 ------>ATHB12             <---------ATHB51                    ----------->GT1          --------->YAB1 ------YAB1                <---------AHL20(2)              --------->AHL20(2)          <---------AHL20(2) ----ICU4                  --------->AHL20(2)         <---------YAB1----------->GT1    --------->AHL20(2) ---YAB1                   --------->ICU4           --------->YAB1---------->DOF2 <---------ATHB12--- -->ICU4              <---------ARR11(3)            --------->AHL20(2)     ---------->DOF2<---------YAB1   ttattgattaatatcagacttcaagataaataattaaatatcattggtttaaaattataaaaaaaatgtaaagtacaaaaagtaatcaatttataatcaa  1976700                                                                         -------->HAHB4                                                                         --------->ATHB12                                                                         <---------ICU4                                                                         --------->YAB1                                                                        <---------YAB1                                                <---------ANAC55(2)     --------->ICU4            --------->TOE2(3)                   <---------TOE2(3)     --------->YAB1     <---------AHL20(1)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->YAB1               --------->HSFC1(1)                 <---------AHL20(2)        <-------- <---------YAB1                <---------HSFC1(1)                --------->AHL20(2)       <---------YAB1 ------->YAB1                  <---------HSFB2a(2)              <---------YAB1         <---------YAB1 -------AHL20(2)               --------->HSFB2a(2)<------ZmHOX2a(1)  <---------AHL20(2)<---------AHL20(2) xxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ANAC55(2)   --------->AHL20(2)     --------->AHL20(2) ------>AHL20(2)  <---------AHL20(1)     <---------ANAC55(2) <---------KAN4(2)      --------->ICU4   tttataatatgttttcttaatatatgtgtttttctagaaaatcaagtattaaggaacagagggaatattatataatgattagggtcatttttattatttt  1976800                                                    <---------ARR14(2)                             ---------->DOF2   --------->AtLEC2                    <---------AHL20(2)       <---------ANAC58                           --------->TOE2(3)                    --------->AHL20(1)       <---------ANAC58                          --------->ZAT6                    --------->AHL20(2)   <----------DOF2                       --------->TOE2(3)                   --------->AHL20(2)   <---------ANAC58          <----------DOF2    <-----------GT1                   <---------AHL20(2)   <---------ANAC58  <---------YAB1     <-----------ARR10 -AHL20(2)       --------->YAB1   ------------>CBF  --------->ARR14(2)      <---------CCA1(2)      --   gtgaaggtcattgtcttaaaaataatttagggaaagtccaatgcttttcttgcaaattttcttatagacttttatgtcaaatcttattaaccctagtctt  1976900                                      --------->ZAT18                                      <------NtERF2                                      --------->ZAT14                               --------->ALFIN1               *TSS  ----------->GT1  <---------ZAT14         --------->TOE2(3)---------->DOF2      --------------->AtSPL3                      --------->AHL20(2)     ------>ZmHOX2a(1)--------->TOE1(3)<---------ALFIN1                     --------->AtMYB61 ---->ZmHOX2a(1)  ---------->DOF2<---------RAP2.6(2)                    <---------ETT(2) ----------->GT1   cctattcctaatctaaacttgaaagcttaaaagttgtggctgcactgtttcagtacttcgtccctgtctgtctttcgaccaaaactctgagaagtaaata  1977000                                                                                    --------->AHL20(2)                   --------->HSFB2a(2)                                        ----------->GT1           <-----------GT1                                              ---------->DOF2          <---------AHL20(2)                                          --------->REM1(2)      --------->ICU4                                               <---------ANAC55(2)    <---------ANAC46    --------->AHL20(2)                                             <---------ANAC55(1) --------->GLK1(2)   --------->AHL20(2)                      <---------YAB1          ----------->GT1  <---------AHL20(2)   <---------AHL20(2)              <---------ANAC58                <---------ANAC58 <---------AHL20(1)  <---------AHL20(1)               <---------ANAC58                <---------ANAC58 --------->AHL20(1) --------->YAB1    <---------HSFB2a(2)<---------WRKY18(1)          <---------ANAC46--------->AHL20(2)   ctaaaataatttttaatcgttctacaagtttttttttccttgactatgtttagtttctcagacgtagtaacgtgtaaagagagaaataaattctgtgttc  1977100                                                                                      <---------ICU4                                                                                      --------->ATHB12                                                                                     <---------YAB1                                                                                     --------->ICU4                                                                               ======================HOX2a_HOX2a                                                                               <------ZmHOX2a(1)                                                    <----------DOF2        --------->REM1(2)                                                 <-----------GT1          --------->ALFIN1                                              <----------DOF2           <---------ANAC58                     <XXXXXXXXXXXXXXXXXXXXXMIR2936  <---------DAG2      <---------ANAC58      <------ZmHOX2a(2)              <---------ICU4      <---------HSFB2a(2)                   <---------ANAC46     --------        --------->TOE2(3)         --------->HSFB2a(2)     --------------->AtSPL8   --------->YAB1   catagcgaaatattaatctttgtttttgttttgtttctcgagattgttctttaacttttcgatgtacaaaatttgtgtgtaggagtcatcattgagatca  1977200                                                                                                 <---                                                                                              -------                                                                                              <------NtERF2                                                                                             <-------                                                                                            <--------                                       <---------ICU4                                     <---------MYB46(3)                                   --------->AHL20(2)                                     <------MYB83                                ----------->GT1                                 --------->ARR14(2)                             <---------ANAC58                             <---------ETT(1)<------MYB46(1)                             <---------ANAC46                       <---------AHL20(1)    --------->MYB52(2)                             <---------ANAC58                       <---------AHL20(2)   <---------AtMYB61                         <---------ANAC46                           --------->AHL20(1)<-----------RAV1(1)     ----------->RAV1(1) <---------ANAC58                   --------->ZAT18     <---------ARR14(2) ->ARR11(3)              <---------ANAC58         <----------DOF2   --------->AHL20(2)<---------MYB46(3)   atggagacaacagttgatacgacgattacttgggtgattaaaaatttctcttctttgcaatctgcaccaatttattccgacatattcgttgttggtggct  1977300                                              <-------GAMYB                                             <---------AtMYB61                                             --------->MYB111(2)                                             --------->MYB111(1)                                             <---------MYB46(3)                                             --------->MYB52(2)                                             --------->MYB55(2)                                <-----                                            <--------P                                         ------                                       ------>MYB83                            --------->At4g35610                                       ------>MYB46(1)                         <---------At4g35610                                      --------->MYB52(1)                      --------->ALFIN1<------                                     ------->GAMYB                         <---------TOE1(3)  <------ ---NtERF2                          --------->MYB46(3)              --------->LBD16           ------- -->At4g35610                       <---------MYB52(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --MYB46(3)                       <-----------GT1        ----------->GT1   <---------TOE2(3)  ======= -RAP2.6(2)             <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             -------   gcaagtggcaagtagatagactgtttttatttgttttaaccaacgggttgttggcccagtagtaaatctccgagtttaaggtgctgagtttcagacacgt  1977400  Previous    Next  AGI:  At2g05400.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related [Arabidopsis thaliana] (TAIR:AT2G05410.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains domain PTHR10420 (PTHR10420); contains domain PTHR10420:SF29 (PTHR10420:SF29) Range:  from: 1974883    to: 1976567    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g05410.1    Description:  ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related. similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G05420.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 1976915    to: 1978550    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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