Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------RAP2.6(3)         --------->RAP2.6(2)                                          <-------GAMYB        <------NtERF2                                                --------->MYB111(2)     --------        --------->RAP2.3(1)                                          --------->MYB55(2)      <-------       --------->At4g35610                                           <---------MYB46(3)      <-------      --------->ARR14(2)                                             --------->MYB52(2)      --------      <---------ARR14(2)                                          ------------>MYB.PH3(2)   <--------     <------ZmHOX2a(1)                                    --------->MYB52(1)                --------- ------->CCA1(2)                                          ---------->DOF2        --------->YAB1 -------ARR11(3)                      ------>ZmHOX2a(1)----------------->AGL1  --------->ANAC58 ------>ARR11(3)                   ------>ZmHOX2a(1)   ----------------->AG    --------->ANAC58   gatatgaggagccgaaacgttttgcattcccctagtcctcctaatccaaacttggatgcctaaaggggagtttgttgggataagcatgaagtcaataaat  1970300      ---------->DOF2 ->AHL20(2)                             <----------DOF2    --------->CCA1(2) --AHL20(2)                          --------->ARR11(3)   --------->ARR11(1) --AHL20(1)                    <---------YAB1             <---------ARR11(3) ->AHL20(1)               <------ZmHOX2a(1)  <------ZmHOX2a(1)     <------ZmHOX2a(1)        <-------- -ATHB12           --------->AHL20(2)<---------ARR11(3)   --------->ARR11(3)  <---------ARR11(3) >AHL20(2)   <---------YAB1    <---------TOE2(3)      ---------->DOF2        --------->REM1(1)  <----   tagggaataaaagttatgttttaaaataggattaagataaatctttaggagtaatctaaagatatgttaggagttatctacatcttattctattgtgttt  1970400  --------->YAB1                                    --------->CCA1(2) <---------YAB1             ---------->DOF2--------->TOE2(3) -YAB1       ------>ZmHOX2a(1)             --------->TOE1(3)             <----------DOF2 -----MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           ---------->DOF2         ---------   gttatcatccctctcctatataagagttgccaaagttgtggtaaaccttaagagatttgagagagagattgaaagctttgttttgagttattttcaaagc  1970500                                               <------MYB46(1)                                               <------MYB83                                              --------->MYB59                                            <XXXXXXXXXXXXXXXXXXXXXMIR845B                                          <XXXXXXXXXXXXXXXXXXXXXXXMIR829.1                                        <---------------AGL15                                        --------------->AGL15                                        <----------DOF2                                       <-----------------AGL3                 ---------->ID1                                       <-----------------AGL2                <-----------GT1                                     --------->ARR11(3)          <---------TOE1(2)         <---------YAB1  ---------->DOF2<---------YAB1      <---------ARR11(1)          <---------TOE2(2)      <---------ARR14(2) <---------AHL20(2)      ------>ZmHOX2a(2)<---------AHL20(2)   --------->TOE2(2)        --------->ARR14(2) ->DOF2     <----------DOF2         <---------CCA1(2)          --------->TOE1(2)<----------DOF2   taataaaaggagtgcttttatatttgatctaagtattcaaatctttatttggtatcagagcataacctaggtttcaatttttctttttcgaatatgagtg  1970600                                     --------->ALFIN1                                    --------->ALFIN1                                    --------->ATERF1(1)                       ---------->DOF2                 ------->GAMYB     --------->ATERF1(1)                <---------MYB52(2) --------->ALFIN1                --------->MYB46(3)--------->ATERF1(1)                                              <-              ----------->RAV1(1) --------->ALFIN1                                                ---           --------->ANAC58      --------->ALFIN1                                          <---------ZAT14           --------->ANAC46      --------->ATERF1(1)                                    <---------ANAC46           --------->ANAC58     --------->ALFIN1       <------------CBF                 --------->ALFIN1     --------->At4g35610       --------->ALFIN1       --------->YAB1                 --------->ANAC46     <---------At4g35610      --------->ALFIN1       <---------ATHB12     --------->ANAC58 <---------ZAT18 <-----------RAV1(1) --------->TOE2(3)--------->ALFIN1--------->ATHB12    --------->ANAC58 --------->ZAT18   aaattgttgctgcaagcaacaaacctaaagaagggggggggggggtcatcatccattcattgtcccatgctgaacaacgctaattacacggtgtggacta  1970700                                                             <---------bZIP60(2)                                                          ----------->HVH21                                                        --------->At4g35610                                                        <---------At4g35610                                                      <-----------RAV1(2)                                                     <------ZmHOX2a(2)      *TSS                                       ------>ZmHOX2a(1)                                 --   --------->ALFIN1                              --------->LBD16                            <-------- <------ZmHOX2a(1)         --------->DAG2       <---------LBD16             --------->CCA1(2)   <---- --------TOE2(3)          ---------->DOF2     <------ZmHOX2a(2)           --------->YAB1  <----------DOF2 ------>YAB1          --------->ZAT18        <---------ARR14(2)        --------->YAB1  <---------ARR11(3)   tgaggatggaggctactctccgagtgcataaagtttgggaaacaatcgatcctggatcagatgacatggagaagaatgatatggctcgagctcttttatt  1970800         --------->ANAC46                                 --------->ALFIN1      --------->ARR14(2)                                 <-------MYC3      ------->TEIL                                       ------->MYC3      <---------ARR14(2)                                --------->O2      --------->SPL7                                    <---------O2                      -----------    <---------SPL7                                      <---------PIF3(3)               <---------At4g35610   <---------ANAC55(2)                                  <---------TGA1a                 --------->At4g35610   --------->ANAC55(2)                                  --------->TGA1a             <---------DEAR3(1)   <---------ANAC58                                     =============================================   <---------ANAC58                                --------->ANAC58          <---------MYB52(2)  --------------->AtSPL8                           --------->ANAC58         --------->ANAC46    -----  --------------->AtSPL3                         =================bZIP_DOF  --------->ANAC58   ------ ------->WOX13(1)                                ---------->DOF2            --------->ANAC58--------- -AHL20(2)                 --------->ANAC46--------->ARR11(3)  --------->ANAC58<---------ARR14(2) -------GT1        <---------ARR11(3)      <---------ARR11(3)  --------->ANAC58--------->ARR14(2)   -   tcaatccgtacccgaatcaactatcttacaagtcggaaaacacaagacctctaaagccatgtgggaagccatcaagacaaggaacctcggtgctgaaagg  1970900     --------->ANAC58                                                                    --------->ARR14(2)     --------->ANAC58                                                                    <---------ARR11(3) >HVH21                                                <---------ARR11(3)                --------->GLK1(2) ==bZIP_DOF                                            --------->ARR11(3)                --------->ARR11(3) ------>GT1                                           --------->YAB1                     <---------ARR14(2) ----->GT1  <----------ID1            <---------WOX13(1)                                --------->RVE1(1) ->DOF2 ---------->DOF2            <---------YAB1  ---------->DOF2                      <---------GLK1(1) --------->DOF2               <------NtERF2      <---------YAB1                   ----------->GT1----   gtaaaagaagcaaagctacaaactcttatggcagagtttgatagactaaatatgaaagataatgagacaatcgatgagtttgtagggagaatatctgaga  1971000             --------->GLK1(2)                                              ---------->DOF2            <---------GLK1(2)                                             --------->ANAC58         --------->YAB1                                                   --------->ANAC46   --------->ANAC46                                                       --------->ANAC58    -------   --------->ANAC58                                                <---------ANAC58          <-------   --------->ANAC58  --------->HSFB2a(2)      ----------->GT1      <---------ANAC58     <-------TEIL ----->GLK1(1)       <---------HSFB2a(2)    <---------GLK1(2)  ---------->DOF2   ----------->GT1   tttctacgaaatcagaatctcttggagaagaaatagaagagtcaaagattgtgaaaaaatttctgaaaagcttgccacgaaagaagtatatacatatcat  1971100                                                                                           <------ZmHOX2a(1)                                                                            ======================HOX2a_HOX2a                                                                            =========================                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                           =======================HOX2a_HOX2a                                             --------->CCA1(2)            <---------ARR11(3)                           --------->ANAC46 --------->ARR11(3)            --------->ARR14(2)                 <---------HSFB2a(2)        <---------ARR11(3)    --------->TOE2(2)      <---------TOE2(3)              --------->GLK1(2)     <---------ARR14(2)   =========================HOX2a_HOX2a             <---------GLK1(2)      --------->ARR14(2)   <------ZmHOX2a(1)--------->ARR11(3)             --------->ARR14(2)   --------->LBD16        ==========================HOX2a_HOX2a             <---------ARR14(2)  ------->GAMYB       <------ZmHOX2a(1)    <---------ARR14(2)        <      ---------->DOF2 ------>ZmHOX2a(2)     <---------ARR14(2)    --------->TOE1(2)    --------->ICU4 -->ATHB12 ----------->ARR10    <---------LBD16      ==============================HOX2a_HOX2a    <-- --YAB1  <---------At4g35610   --------->MYB52(1)    =============================HOX2a_HOX2a<-------   tgcagcattagagcagattctcgatctcaacacaaccggatttgaagatatagtaggaaggatgaaaacatatgaagatcgggtttgtgatgaggatgat  1971200  Previous    Next  AGI:  At2g05390.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.2e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 1970706    to: 1974723    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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