Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->AHL20(2)                                                                       <---------AHL20(2)                                                                    <---------ICU4                                                                  <---------TOE2(3)                                                                 <---------AHL20(2)                                                            ------>ZmHOX2a(1)                                                      <---------ARR11(3)                                                      --------->ARR11(3)                     --------                                              =====================HOX2a_HOX2a        <-------GAMYB                                              ------>ZmHOX2a(2)  --------->YAB1      <---------MYB46(3)                          ---------->DOF2   --------->ARR11(3)   --------->AHL20(2)  --------->MYB111(2)                     <----------DOF2        <---------ARR11(3) <---------YAB1    --------->DAG2   tatgttgaaattgttttcatgggcttttgaaagcgagactagacttgatcttgcaagttctccttattaatatttatataagaaaggttgttgtaattct  1942200                             <---------YAB1                          <---------WOX13(1)                ------>ZmHOX2a(2)                        <---------ARR11(3)               <------ZmHOX2a(2)                         --------->AHL20(2)              <---------ARR14(2)                         --------->AHL20(1)              --------->ARR14(2)                         <---------AHL20(1)              --------->ARR11(3)                         --------->ARR11(3)              --------->ARR14(3)                        --------->CCA1(2)              <---------ARR14(3)                       <---------ARR11(3)              <---------ARR11(3)  <---------AHL20(2)   --------->ARR11(3)                   <--------      <---------MYB46(3) <---------ANAC58   --------------->AGL15               <---------AHL20(2)  <     <---------AtMYB61   <---------ANAC58 --------------->AGL15                --------->AHL20(2)   - ->ICU4<-------GAMYB    --------->ATHB12  <---------------AGL15   ----------->TBP           ---------   tgtagttttggttgaagatcttcaattgattgtcatttttttttctctaattagagagatatattagtatatatagatagatttatttccctaagatttt  1942300                                         <---------AHL20(2)                                         --------->AHL20(2)                                        --------->AHL20(2)                                  --------->ANAC58                                  --------->ANAC58                                 --------->DAG2                             --------->AHL20(2)                          --------->AHL20(2) -ARR11(3)       ---------->DOF2---------->DOF2                                                  <--- ---------ARR11(3)       --------->AHL20(2)           --------->GLK1(2)            <---------TOE1(3) -------->ARR11(3)  ----------->GT1------------>CBF <---------AHL20(2) <---------ZAT6 <----------DOF2 >ARR11(3) <---------ICU4<---------AHL20(2)   ----------->GT1   <-----------TBP    <---------TOE2(3)   aagatgtccctaattagttcaaaggaaataaataaaaagcaatttaaatagtaaataatctaattcatatatagagatagccattaagctttgttatctc  1942400                                                                                                 ----                                                                                                 <---                                                                <------------CBF                 ----                  --------->ANAC46                            <---------YAB1                     <---                  <---------ALFIN1                     --------->AHL20(2)                       <----                ----------->RAV1(1)                    <---------AHL20(2)                       -----                <---------ALFIN1                    <---------YAB1                              <----               <------NtERF2     ---------->ID1    --------->AHL20(2)                         -------              ------>NtERF2     <-----------GT1   <---------AHL20(2)                ----------->TBP ---------CBF--------->PCF2------>ZmHOX2a(1)     --------->AHL20(2)        <---------TOE2(3) <-------   attgttttccatttgcccccacacatctcctgtttttcgtttttggtctgaattaatataaatttctattgtttgtttatgttgatataaaaactataat  1942500                                                     ----------->ARR10                                                 --------->YAB1                                                 <---------ICU4                                                <---------ATHB12                                                --------->ICU4 ----->ATHB12                                 --------->WOX13(1) -----HAHB4                                 <---------YAB1 ----->YAB1                               --------->YAB1 ------ICU4                           --------->AHL20(2)                             <----------DOF2 -----YAB1                            --------->AHL20(1)                       --------------->AtSPL8 ---->ICU4                            <---------AHL20(2)                       <---------------AtSPL8 -----ATHB12                 ----------->GT1------------>CBF            <---------TOE2(3)        ---- -->YAB1             ---------->DOF2 --------->AHL20(2) --------->CCA1(2)  <XXXXXXXXXXXXXXXXXXXXMIR400 --YAB1  ---------->DOF2  <----------DOF2<---------YAB1--------->ARR14(2)  <----------DOF2      -----   cattacaagactaaagaaaacacaaaagcttttgtaaaattttattatcaatcatgagatttgctagtttgtttgtggtttattgtactttcatgttcct  1942600                                   --------->ARR11(3)                                  --------->YAB1                                 <---------YAB1                              <---------AHL20(2)          <-----------HVH21  --------->AHL20(1)         --------->bZIP60(2) <---------AHL20(1)                                         --------->YAB1    --------->ANAC58         <---------AHL20(2)         <-----------GT1 <---------AHL20(2)    --------->ANAC58         --------->AHL20(2) --------->REM1(1)      --------->AHL20(2)    --------->ANAC46   --------->ANAC58    ----------->GT1       <---------ANAC58     --------->ANAC58 ----->ANAC46          --------->ANAC58    <---------MYB46(3)    <---------ANAC58     --------->ANAC58 ->ZmHOX2a(1)        <--------P--------->YAB1 <-----------GT1 <----------DOF2<-----------GT1     ----   cgacataagccatgtcaaatgtggtaagcaatataatgatatcgattgttacaactattttcttctttcttgataaaatttacatcgcaagcatcgttgt  1942700                                  <---------AHL20(2)                            --------->TOE2(3)               <---------ARR11(3)      <--------P                           <---------ICU4                   --------->AHL20(1)      <---------WOX13(1)                           --------->ATHB12                 --------->ARR11(3)     <-------GAMYB                           <--------HAHB4                   <---------AHL20(1)    <---------MYB46(3)      <---------AHL20(2)  --------->ICU4               <---------YAB1            <---------TOE2(3)     --------->YAB1       <---------YAB1        --------->ANAC55(2)          <----------DOF2    --------->AHL20(2)  --------->YAB1          <---------ANAC55(2)       --------->GLK1(2)    ------ ------->GT1         <----------DOF2 <---------YAB1   <-----------GT1 <-----------GT1     <---------AHL20(2)   ggtaaaataaaaatgctaatcttctttcatcattagtttattaatctaagacgtattatcaatatatagttttgacaatctttgtggttgatataaatca  1942800                                                                                      --------->TOE2(3)                                                                                      <---------DAG2                                                                                   <---------ALFIN1                                                                               --------->WRKY38(1)                                                                            <---------ANAC58                                                                            <---------ANAC46              <------NtERF2                                                 <---------ANAC58      --------->TCP20  ---------->DOF2              <-----------RAV1(1) <---------ANAC58      --------->ARR14(2)                   ----------->GT1              --------->TGA1a      <---------ARR14(2)                <---------TOE2(1)               <---------TGA1a      --------->TCP16(1)                <---------TOE1(1)               =============================   --------->ALFIN1 ----------->GT1    --------->SPL7   <---------At4g35610<-------TEIL     --------- --->YAB1    ------>NtERF2           <---------SPL7 --------->ALFIN1    <---------ANAC58  <---------YAB1   tagaggtggaaccggtgccatattgtaaagttatcacatggtacgatgttaaatgtggtgctgatggaaacaagacgtgcgtagaccaccttatcaaagg  1942900                                                 --------->GLK1(1)                                                 <---------GLK1(1)                          ---------                                         --------->bZIP60(1)                                <--------                                      --------->ETT(2)        <-----------HVH21             ---------                                      --------->ANAC46      <-------MYC4                   --------->ZAT2                                      --------->bZIP60(1)   ------->MYC2                   <---------ZAT2                                      <---------bZIP60(1)   <-------MYC2                  ------>NtERF2                     <---------YAB1 <---------DOF5.7(2)     <-------MYC3          ---------->DOF2         <---------ANAC58          --------->WRKY12     <---------ZAT18      <---------ANAC58    <---         <---------bZIP60(2)     --------->At4g35610    --------->ZAT14      <---------ANAC46   <----      ----------->HVH21          <---------At4g35610    <---------ZAT14      <---------ANAC58   <---- ==bZIP_DOF    ------>ZmHOX2a(1) <-------GAMYB <------ZmHOX2a(1)   <---------ALFIN1      <---------ALFIN1 ->DOF2  <---------ANAC58 <---------ZAT14<---------bZIP60(1)------->MYC3<---------MYB52(1)<---------ATERF1(1)   gcatatatatgacgttcctgtttgtgattgtagtgagttgacgacatcaggaattctctgcacatgtcaacaccgttttccttgtaaagagccacctccg  1943000                                                                                                 xxxx                                                                                                 <xxx                                                                                                xxxxx                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------LBD16                                                                                          xxxxxxxxxxx                                                                                        <---------ARR14(2)                                                                                      <---------MYB46(3)                                                                                     <---------AtMYB61                                                                                    xxxxxxxxxxxxxxxxx                                                                                   <---------ANAC46                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            <-----------GT1<xxxxxxxxx                                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                           <---------AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i)                                                           <---------AHL20(1)xxxxxxxxxxxxxxxx>smallRNA(i)                             --------->LBD16               --------->AHL20(1)xxxxxxxxxxxxxxxx>smallRNA(s)       --------->GLK1(1)    --------->LBD16                --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >AtMYB61                  <---------LBD16             <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -ALFIN1                  <---------LBD16              --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >DEAR3(1)              <---------ARR14(2)            <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------MYB52(1)         --------->ARR14(2)            --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------HVH21          <---------GLK1(1)              --------->AHL20(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---GAMYB     --------->YAB1<---------LBD16   ----------->GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ttacatcgtatttccatcagaaaacaaatccggggataaactagaagattgtaaaatttaataaaatgaaaactaatattacatgctgtggtttcgggct  1943100  Previous    Next  AGI:  At2g05335.1    Description:  SCRL15 (SCR-Like 15). Identical to Uncharacterized protein SCRL15 precursor (SCRL15) [Arabidopsis Thaliana] (GB:P82634); similar to SCRL16 (SCR-Like 16) [Arabidopsis thaliana] (TAIR:AT2G06983.1); contains InterPro domain Plant self-incompatibility response; (InterPro:IPR010682) Range:  from: 1942554    to: 1943039    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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