Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                              --------->YAB1   <-----                                                                             <---------ATHB12  ------                                                    <-----------GT1          --------->ICU4    <-----                                               --------->ATHB12            --------->WOX13(1)  ------       ---------->DOF2                         <---------ICU4     ---------->DOF2      ------>MYB46(1)   >>>>>>>>>NAM               ------->TEIL    <---------YAB1  --------->ANAC55(2)      ------>MYB83 < ------->DAG2    --------->At4g35610        --------->YAB1    <---------ANAC46<---------ICU4  <------ ------->DOF2    <---------At4g35610      <-----------GT1     <---------ANAC55(2)  ------->TEIL<-----   aaaagggatgaaagaactaagctctctaactggacctccaagtttttcatcatttgacaatatcgcgtaaaagtctccaatcatgaaccaagcttcagat  1924900     ------>MYB83     ------>MYB46(1) -->ZmHOX2a(2) --ZmHOX2a(2)                                                   --------->ARR14(2) ----AGP1                                                   --------->LBD16 --->AGP1                                                 ------>ZmHOX2a(2) --->ARR14(2)                                           <---------ARR14(3) ----ARR14(2)                    --------->MYB52(1)     --------->ARR14(3) ----ARR11(3)              <---------ALFIN1             --------->ARR11(3) --->ARR11(3)              ----------->RAV1(1)          <---------ARR14(2)    --------->ANAC46 ------ARR10            ---------->ID1                  --------->ARR14(2)    --------->ANAC58 --->ARR14(3)     <---------GLK1(2)                     <---------ARR11(3)    --------->ANAC58 ---------WRKY18(1)     --------->PCF2            <-----------GT1  --------->ANAC46           ------- ---CCA1(2)       <---------ARR11(3)           ----------->GT1  <---------ARR14(2)     <----------DOF2 ----ARR14(3)     --------->ARR11(3)       --------->ZAT6<------ZmHOX2a(2)--------->CCA1(2)--------->ANAC46   cttgacctcccaaaactatagattttgtcccacactaagggtcgaagactagtaacaagatccccatatacacaagagacaagccaactctttacaccat  1925000                                                                                            -------->P                                                                                 --------->AtMYB61                            <---------------AGL15                                --------->ZAT6                 <---------TOE2(3) ----------->GT1                               <---------ALFIN1          <---------ARR11(1)--------------->AGL15                 <---------AHL20(2)        ------>MYB46(1)         <---------CCA1(2) ----------------->AGL3                 --------->AHL20(2)        ------>MYB83       --------->YAB1    <-----------GT1                <---------YAB1          --------->MYB46(3) -->AtMYB61     --------->YAB1   ---------->DOF2       <---------ARR11(3)     --------->ANAC46    >>>   cacaaactttcatatctataatgtttttatccacaaaaagaaaatcaacgagaaggttatctttccaaaaaattgctaatccaccactagtaccaacatg  1925100                                --------->TOE1(3)                            ------->GAMYB                           --------->MYB46(3)                        ------>ZmHOX2a(1)               --------->AHL20(2)             <---------RVE1(1)  --------->TOE2(3)            <---------GLK1(2) ------>MYB46(1)            <---------ARR11(3)------>MYB83            --------->ARR11(3)-------->P--------->AHL20(2)                                 --------->ANAC58          <---------TOE2(3)<---------MYB52(2)    ---------->DOF2                           --------->ANAC58          <---------TOE1(3)<---------MYB55(2)<-----------GT1  <---------AHL20(2)     <---------ARR11(3) >>>>>>>>>>>>>>LFY <---------CCA1(2)    <---------AHL20(2) <---------GLK1(2)  <------ZmHOX2a(1) <----   ttccactgttttaagatttttatatcctaaccaaccttgaatttttttaacaaaagcttcagaattttttgtttccatgaggaacaacatctcaaggaaa  1925200            <---------ZAT18           --------->ARR14(2)           <---------ARR14(2)                                                               ---------          --------->GLK1(1)                                                                 <--------          --------->At4g35610                                                               ---------          <---------At4g35610                    ------>ZmHOX2a(1)                          <--------       <---------ZAT18                          <xxxxxxxxxxxxxxxxsmallRNA(s)             <---------MYB46(3)       --------->LBD16                          <---------ANAC58      ------>NtERF2     <--------P      <---------ANAC46                --------->GLK1(1)      <---------At4g35610       <---------MYB52(1)  <---------ANAC58                    <---------GLK1(1)      <---------ZAT2         <---------LBD16  <---------ANAC58                <---------TOE1(2)    --------->GLK1(1)    *TSS    <---------ZAT14 -----KAN4(2)        --------->MYB52(1)         <---------ANAC58  ----------->HVH21 --------->ZAT18<-   tattccttgcgcagttccctaaaaaacgaattgtccaaggatttctcagtccttggcaattccagcttatgacgccttactgagactgcggtagttcact  1925300    --------->MYB52(1)  --------->MYB46(3)                                  <---------HSFB2a(2)  <---------MYB52(2)                                  <---------HSFC1(1) >ZAT14                                               --------->HSFB2a(2) -ZAT18                                               --------->HSFC1(1) <------ZmHOX2a(2)         -- >ZAT18                                   <----------DOF2              <---------At4g35610    <------ -ZAT14                                  <---------DAG2    <---------GLK1(2)            ---------->DOF2 -----ZmHOX2a(1)            <------ZmHOX2a(1)  <----------DOF2         --------->At4g35610   --------   aggaactaccgtagttttgtctgttttagaggaagtagctataccttttcttttttctagagaatttctattcagatcagacttgttctctaaagattca  1925400                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                  --------->CCA1(2)                                                 <---------ARR14(3)                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                                 <---------ARR11(3)                                                 --------->ARR11(3)                                        =================HOX2a_HOX2a                                        ==================HOX2a_HOX2a                                        ------>ZmHOX2a(1)                             <----------DOF2     --------->ARR14(3)                         --------------->AGL15   <-----------ARR10              ----------->GT1       <-----------GT1   <---------CCA1(2)       --------->AGP1                 <------MYB83 --------->ICU4     <----------DOF2    --------->TOE2(3)                        <------MYB46(1) ------->YAB1      <---------DAG2      <---------ANAC58                        <---------TOE2(2) ---- -TEIL<-----------GT1    <---------------AGL15   <---------AGP1                <---------TOE1(2) ---- ->CCA1(2)      <-----------GT1        <---------ANAC58   <----------DOF2     <---------MYB52(1) <---   gacataattttccgatttttgccttttctatctttagtattccttatccaagatctaggccttttacaagtactggtatcgttggtaaaactaattgaag  1925500                                                       <---------HSFB2a(2)                                            ---------->DOF2                    --------->GLK1(2)                        --------->GLK1(1) --------->MYB46(3)                  <---------GLK1(2)             --------->MYB52(1) ----------->GT1        --------->HSFB2a(2)    <---------ARR14(2)             -------->P <---------GLK1(1)------>MYB83 <---------LBD16         --------->ARR14(2) ----->ARR14(2)    --------->At4g35610   ------>MYB46(1)         ------>MYB46(1)               ------ ----->ARR11(3)    <---------ZAT14      ----------->RAV1(1)      ------>MYB83<------ZmHOX2a(1) ------ ------ARR14(2)    --------->ZAT14    --------->MYB46(3)       --------->AtMYB61             --------   aactggcctctaaactaccagagcagaaatcagatggtaaaccaacaaaagggttatctggaacaccatccatacataaggattctgagttttgaaccaa  1925600                                                                               ------->GAMYB                                                                             ------>MYB83                                                                             ------>MYB46(1)                                                                            --------->MYB52(1)                                                                           --------->AtMYB61                                          --------->ALFIN1                 ------->GAMYB                           --------->ANAC46                               <---------MYB55(2)                  --------->ATHB12      <---------ANAC46                  <---------MYB52(2)      --------->MYB52(1) <---------At4g35610                              --------->MYB46(3) ---->DOF2---------->DOF2--------->At4g35610   <------ZmHOX2a(1)         --------->ANAC46 --->MYB52(1)    <---------YAB1        <---------TOE2(3)           <----------DOF2 ->MYB46(3)    <----------DOF2         <---------AtMYB61       <---------GLK1(2)              <------   aggctgactaacaaaagctttcattgcatcagccataagtttaggtggaggacatactggtgtctgattcttttcaaccaacgggactgaattgttatcc  1925700                                  --------->ETT(2)                                 <---------HSFB2a(2)                                 --------->HSFB2a(2)                             <---------GLK1(2)                     <------ZmHOX2a(1)     --------->ANAC58       -------->HAHB4                   <------MYB46(1)     --------->ANAC58      <---------YAB1                    <------MYB83 ---YAB1                   --------->ICU4                   --------->MYB59   ttgtctgaagcaaaaatcaactctgaaaaatgattctcgaccgaaattgaagctacagaaggaaggtaaggacatctaggtttctcatgggttaaccttt  1925800  Previous    Next  AGI:  At2g05280.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.4e-30 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 1921238    to: 1925276    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g05290.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) Range:  from: 1924847    to: 1926678    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version