Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------ARR14(2)                                                                             <---------DOF5.7(2)                                                                          <------MYB46(1)  --------->ARR14(2)                                                                   <-------TEIL         -------------               <---------WOX13(1)                                 --------->ARR14(1)   --------------             --------->ATHB12                                    --------->ARR11(1)  <-----------GT1            --------->AHL20(2)                                   <---------GLK1(2) <---------HSFC1(2)            <---------AHL20(2)            ----------->GT1      ----------->ARR10   --------->HSFC1(2)        <---------YAB1         --------->YAB1         --------->At4g35610 <------MYB83 --------------    <---------GLK1(2)       --------->WOX13(1)        <---------At4g35610--------->MYB59<------------   cattcacattctcattaattgacattgtgtcattcatcttgaatgagtaaaacttaagctgcacatagattcgatttggtaacgatgtttccatatacag  1911200                         --------->At4g35610                         <---------ZAT2                                       --------->YAB1                         --------->ZAT2                                       <---------ICU4                        ----------->RAV1(1)                                  --------->ICU4                      <---------At4g35610                           --------->TGA1a        <---------GLK1(1)<---------At4g35610                        <---------O2            <--------     <---------TOE1(3)--------->ZAT14                               <---------TGA1a         <--------     <---------TOE2(3)<---------ZAT14                               --------->O2            <-------- -->AGL15             --------->At4g35610                        --------->DEAR3(1)    <---------ICU4 --->AGL3      --------->O2                       ------>ZmHOX2a(1)------>MYB46(1)     --------->ATHB12 --->AGL2      <---------ALFIN1                  --------->TOE2(3) ------>MYB83  --------->YAB1 ---AGL15    <---------ALFIN1                 <-----------GT1   --------->MYB46(3)    <-------TEIL <-   cttgttcaaggtttcccacatctctgcagcagacttgcagtgatcaattttcctcagaacaacatcaccaacgtgagcgataatcacattcattgcttgt  1911300                                 ------>ZmHOX2a(1)                                 ============================HOX2a_HOX2a                        <------MYB46(1)                        <------MYB83                       --------->MYB46(2)                       <---------------AtSPL8                       --------------->AtSPL8                       --------------->AtSPL3                        ------>MYB46(1)                 <---------------AGL15                               ------>MYB83                 --------------->AGL15                       <---------ICU4     <-----------GT1   --------->MYB111(1)                   --------->YAB1  <---------GLK1(1)    --------->MYB59                      <---------YAB1                          <  --------->GLK1(1)    <---------------AtSPL3             --------->YAB1                            < -ANAC58        <-----------------AGL1                    <---------ICU4------>ZmHOX2a(1)           - -ANAC46    <----------DOF2     --------->TOE2(3)      --------->WOX13(1)        <----------DOF2   -- -ANAC58   <---------ICU4  <-------TEIL               ------>ZmHOX2a(2)--------->TOE2(3)   <--------- --------YAB1   <-----------------AG                  =========================HOX2a_HOX2a <---------DAG2   tctgatttctccatctttacaagattaggtacttccttagtctgtgatgactctgatccatcatcatcaccttcctcaaccttctttccttcacttttag  1911400                                                      --------->ANAC58                                                      --------->ANAC58                                                  --------->ZAT2 ---------At4g35610                               <---------ZAT2   <----------DOF2 ---------LBD16 <<<<<<<<<WRKY18                   <---------At4g35610     <---------ANAC58 -------->At4g35610                     <----------DOF2      <---------ARR11(3) ------->MYB52(1)         <---------ATHB12---------->DOF2  ----------->ARR10  ---------->ARF1 -DOF2        --------->TOE2(3)  <------ZmHOX2a(2)--------->At4g35610     <---------ANAC58   ttagcggaacaaatttcgtcaatgtgaaatcatcgatcactcctttaagcccagctaagccaagatgtgctttcatccttgtcttccatagcgagaagtc  1911500                                                                                                 ----                                                          <-----------HVH21         XXXXXXXXXXXXXXXXX                                                        --------->SPL7             XXXXXXXXXXXXXXXXXX                                                       <---------MYB52(1)    --------->TOE2(3)------>MYB46(1)                                                  <---------ANAC58           --------->TOE1(3)------>MYB83         ---------->DOF2                          <---------ANAC58         ------->TEIL       -------         <---------DOF5.7(2)                  <---------ANAC58       --------->AHL20(2)      --------       --------->DOF5.7(2)  <----------DOF2   <---------ANAC58    *TSS---------->DOF2      ----------   tgagttctcgttaaagacttgaaacgaagcctttaaccctgaattcaagcttgcttcgttcgtcatcgccattaaagaaccttaggctctgataccaatc  1911600          --------->WRKY38(1) ------------>CBF                                                                  <---------ANAC55(2) ------->GT1                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) XXXX>MIR845B        <------ZmHOX2a(2)          --------->ANAC46                   --------->ANAC55(1) XX>MIR845A         <---------ARR11(3)       <---------ATHB12                --------->LBD16 -->GLK1(2)         --------->ARR11(3)     --------->WOX13(1)               --------->ANAC46 ->WOX13(1)     ---------->DOF2          ------------>CBF                  <---------LBD16      <---- -->CBF --------->At4g35610   --------->ANAC46--------->YAB1 <------ZmHOX2a(2)     --------->ANAC55(2)   tgttacaatccgatgactcaaagatcgattcaacacaactcgattcaatcacaacacaactcgatcaagcttcaattcgcggaacacttaatagatcgat  1911700                                                                              <-----------RAV1(1)                                                                              --------->ALFIN1                                                                            ----------->RAV1(2)                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                         <---------MYB52(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------YAB1                       --------->MYB52(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->ANAC58                    --------->MYB52(1)--------->TGA1a                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------LBD16  --------->O2                    --------->ANAC58                  =========================HOX2a_HOX2a                  --------->MYB52(1)                  <------ZmHOX2a(2)  <---------TOE1(2)          -              ---------->DOF2                        --------->ARR11(3) ------>ZmHOX2a(1)           -         --------->AHL20(2)                 --------------------->WRI1------>ZmHOX2a(2)            --        ----------------->AGL3--------->TOE1(2)     --------->At4g35610--------->TOE2(2)        ----- --ZmHOX2a(2)--------->AHL20(2)--------->ANAC46     <---------At4g35610--------->TOE1(2)        -----   caagaacataatcaaataaagaacgaaacgaacacacgattgtttacctagttcagatcaccggtgtgatgatcctacgtctggggctggattcaatcca  1911800                                                    <---------ZAT6                                                    ----------->GT1                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                --------->ARR14(2)                                                --------->ARR14(3)           ------->TEIL                         --------->ARR11(3)        <---------YAB1                          <---------ARR11(3)                                  - -------->ANAC58                                <---------ARR14(2)                              ----- -------->ANAC58                                <---------ARR14(3)                --------->HSFB2a(1) ------->WOX13(1)                        --------->At4g35610                      <---------HSFB2a(1) ---->ANAC58        <-----------GT1      <---------At4g35610                --------->CCA1(2)  ------ ---->ANAC58     <---------ICU4       --------->LBD16     ---------->DOF2<---------TOE2(3)     <-----   gcaatccactatgaatcaatatttactcaagctcaaaacccagagctcaagatcgtgttacaaaggagaagaattgagataagaattttctgttacaacg  1911900        >>>>>>>>>TBF1 --------->DOF2 -->GAMYB                                                                                  --------->GLK1(1) --->MYB46(3)                                                              <---------At4g35610    <-- ----MYB52(2)       --------->YAB1--------->ANAC46                         --------->At4g35610<------   aacaaaggaagaagaagactatttataacagagtccaagtcaaaccctctaataccaagagagtctcttcaatcttctgctgaactcaaaccgatttctc  1912000                   ------>MYB46(1)                   --------->MYB52(1)                   ------>MYB83                 --------->AtMYB61                 <---------MYB111(1)                   XXXXXXXXXXXXXXXXXXXX>MIR170       ---------->DOF2                          --------->MYB52(1)     ------>ZmHOX2a(1) --------->LBD16         ------->GAMYB    --------->TOE2(3)--------->DEAR3(2)       <---------MYB52(2)  <---------DDF1    --------->TOE1(3)--------->RAP2.6(3)   --------->MYB46(3)    --------->ETT(2) --------DOF2    <---------MYB59       <xxxxxxxxxxxxxxxxsmallRNA(s)    <-----------RAV1(2)          < -----GT1        <---------MYB46(2)    ------>ZmHOX2a(2)         <---------ETT(2)               <----   ctttctccttaaaccaataccaaaccggcattgaaccgtgatccaacaactaactgattaaaccaagtcgacatcaggctaaaccagaagtttgaatcac  1912100  Previous    Next  AGI:  At2g05240.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 1907459    to: 1911566    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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