Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------GLK1(2)                                                                      <---------ARR11(3)                                                                      --------->ARR14(2)                           <---------ARR11(3)                         <---------ARR14(2)                           <---------GLK1(2)              <---------GLK1(2)                           --------->ARR14(2)           <---------TOE2(3)                           --------->ARR11(3)           <---------TOE1(3)                      <xxxxx                           <---------ARR14(2)           --------->MYB59                        <xxxxx                 --------->GLK1(1)              ---------->DOF2       --------->ARR11(3)      <xxxxxx -----GT1        --------->At4g35610         --------->YAB1   <---------HSFB2a(2)      <---------ICU4   tattcaatactctaagagcatctccaagagatactctatcccctcaaatataaagttttaggttctccaagagatactccaatacttcataatttagagt  1882600                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                          <-----------GT1                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <---------YAB1<---------YAB1           <-----------------AGL3         --------->ZAT6   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    ----------->GT1       --------->ZAT6                       <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <----------DOF2 xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(le3)                       <-------TEIL                                  - xxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   -----   attgaatagtgacactatatttggagtatcactattcaatactctaaatttgaagtttcatctttttatttgcatttaagtccctaaaattcaatgtttc  1882700                                                                                           xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                     <----------DOF2                                                                                    xxxxxxxxxxxxxxxxx                                                       <---------DAG2               <xxxxxxxxxxxxxxxx                                                    <-----------------AGL1       <---------ZAT18                                          --------->ANAC58                       <xxxxxxxxxxxxxxxxxxx                                          <---------ANAC46                      <xxxxxxxxxxxxxxxxxxxx                                          ----------->GT1                      <xxxxxxxxxxxxxxxxxxxxx                                          <---------ANAC58                     <---------TOE2(3)                                          --------->ANAC55(2)            --------------->AGL15                                          <---------ANAC55(2)           <-----------------AG                                          --------->ANAC55(1)           ----------------->AG --------                                          <---------ANAC55(1)           <-----------------AGL1     --     --------------->AtSPL3               --------->ANAC58              <-----------------AGL2     <-     <---------------AtSPL8               <---------ANAC58          ---------->DOF2<xxxxxxxxxxxxxxxxx     --------------->AtSPL8--------->ATHB12     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxx  <---------AHL20(2)      <---------YAB1  --------->ANAC46       --------->TOE2(3)xxxxxxxxxxxxxxxxxxx -------->YAB1      <---------YAB1      <-----------GT1<----------DOF2  ----------------->AGL1    <xx ---->YAB1     <-----------GT1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------------AGL15    <xx   ataaataatcgtacaaattactatgtttatcatttgagaatattacgtaattagacactttttggaaacttaatgccgattaaggcactttaaaaagatt  1882800          --------->ANAC46          --------->ANAC58     xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------DAG2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(le3) xxxxx>smallRNA(fl3) xxxxsmallRNA(le3) xxxxsmallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->ATHB12 --------->ANAC58 <-----------GT1 ------->ZAT18  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------ZAT18  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <---------ARR11(3) xxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------AHL20(2) xxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)             --------->AHL20(1) xxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              ------>ZmHOX2a(1)         --------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->YAB1     --------->YAB1  <---------CCA1(2)         <   gggcacttttctaagccaaattgtccaatttgcccttctaactataacttcctctcgtgataatattttttgacttatatctctcattcttctctctctt  1882900                                         --------->YAB1            <---------ICU4                   -                           --------->AHL20(2)                     <---------YAB1                  ---               <----------DOF2        --------->WOX13(1)  <----------DOF2                         ---        <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ICU4    <---------ARR11(3)    <----------DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------YAB1    <----------DOF2  --- ----------DOF2<---------DAG2        ---------->DOF2      <---------DAG2<-----------GT1       <xxxxxx   ctctttcttttttctcactttatcgaaaaataaacaaaatcaagcagaacaaaaaaacaacttttctcattattttgctatttctttatcttctcatcac  1883000                                   --------->HSFC1(1)                                   --------->HSFB2a(2)                                   <---------HSFB2a(2)        ------------>CBF       ====================HOX2a_HOX2a      <-----------GT1        <---------ARR11(3)                            <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------>ZmHOX2a(1)      --------->GLK1(2) ----------->CBF             --------->ARR11(3)             --------->At4g35610           ------->TEIL ------>ANAC58           --------------------->WRI1         <---------At4g35610       --------------- ------>ANAC46        ================HOX2a_HOX2a   --------->ATHB12<-------TEIL  <---------WOX13(1) ------>ANAC58        ------>ZmHOX2a(1)<---------GLK1(1)   --------->GLK1(2) <---------At4g35610   -- xxxxxxxxxxxxxxxxxsmallRNA(i2) ------>ZmHOX2a(2) *TSS     <---------GLK1(2)<---------RAP2.6(2)    ---   aagtcaattcaccaattcgttctcctattttgatcttctcgaattcctatggtttcattggaatctgagattcagtttcggctaattgaatgtactcgct  1883100                                         <---------ANAC46                                       <---------ZAT2                                       <------MYB83                                       --------->At4g35610                                       <---------At4g35610                                      --------->MYB55(2)                                     <---------MYB55(1)                                             <                                  --------->ANAC46                                                xxx                                 --------->RAP2.6(3)                                              ---                                --------->MYB52(1)                                               ----                        <---------ANAC46 --------->ALFIN1               ----------->RAV1(1)      ----                        ----------->GT1<------MYB46(1)         <-------TEIL               <---------ATHB12 >AtSPL8               <---------------AtSPL8    ----------->TGA1      --------->ANAC46  <xxxxxxxxxxx ------->TOE2(3)  <-----------RAV1(1)<-----------RAV1(2)   <---------------AtSPL8  --------->MYB46(3) ------>ATHB12    ===============================RAV  ---------->DOF2<-----------GT1    xxxxxxxxxxxxx   tcattagtcaagttttggcactggtggagtacaaaaacggcaggtgtgtaaatgacgaaagcgagtacatttaacgacagaagaaacagccagtgattcg  1883200                  --------->ARR11(3)                  <---------ARR11(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       --------->CCA1(2)      --------->ARR14(2)      <---------ARR14(2)                                                                      <------    ----------->ARR10  ---------->DOF2                                               <---------ANAC58   <------ZmHOX2a(1)------>ZmHOX2a(2)                                                <---------ANAC46   =======================HOX2a_HOX2a                                                <---------ANAC58   ========================HOX2a_HOX2a                                         <---------TOE1(3) -----------RAV1(2)<------ZmHOX2a(2)                                           <---------YAB1<------- xxxxxxxxxxxxx>smallRNA(s)                                                     <---------TOE2(3)    < -------->RAV1(1) <---------AGP1                                            xxxxxxxxxxxxxxxx>smallRNA(i) ------->HVH21 <---------HSFB2a(2)                                      --------->GLK1(1)   <-------- ----->ANAC46  --------->HSFB2a(2)<----------DOF2                      <---------ARR14(2) ----------- xxxxxsmallRNA(s) --------->AGP1  <---------DAG2                       --------->ARR14(2)----------->HVH21 xxxxxxxxxx>smallRNA(si3)   <---------ICU4                        --------->MYB52(1)--------->MYB52(2)   cgacaggagatttgggtctagatctaaaagtcattactttattcgatgtctcttcttagttgtttctccaacggatttgttatggtttcttgcgacggtt  1883300                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  --------->ATERF1(1)                              <------MYB83                              <---------MYB46(3)                              <------MYB46(1)                             <---------DEAR3(1)                             <---------AtMYB61                             --------->MYB111(2)                             --------->MYB111(1)                             <---------MYB46(3)                             --------->MYB55(2)                             --------->MYB46(2)                            <---------MYB55(1)                            <--------P                   ------>NtERF2                           <---------ANAC58             <---------RAP2.6(2)                           <-------GAMYB                <---------ANAC46                           <---------ANAC58            --------->ATERF1(1)                          <------MYB83                 <------NtERF2                          <---------MYB46(3)          <---------ATERF1(1)                          <------MYB46(1)            <---------DEAR3(1)                          --------->MYB55(2)       <------MYB46(1)                          --------->MYB52(2)       <------MYB83                          --------->ATHB12         --------->MYB52(2)                         <---------AtMYB61     <---------MYB46(3) -GAMYB                 <---------MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(i)             --------->TOE2(3) --MYB46(3)            <-------GAMYB <------NtERF2<---------AtMYB61 <------ZmHOX2a(2) ----------->HVH21 ----------DOF2       <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------GLK1(1) -DEAR3(1)            <-----------RAV1(1)<------ZmHOX2a(2)   <---------ZAT14    --------->GLK1(1) ->AtMYB77     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------MYB46(3)       <---------TOE2(3)     ---   gtcttttatatggtgatgaagtgtctgttggttggtggaggcgatcgagttgttggtggcgactgaagcgatcgagttaatgaaatccttgacaactctg  1883400                            --------->GLK1(2)                            --------->ARR14(2)                     ------>NtERF2                   ----------->HVH21                                                             <---                 --------->ANAC58                                                           ---------                 --------->ANAC46                                                       <---------HSFC1(1)                 --------->O2<---------RVE1(1)                                          <---------HSFB2a(2)                 <---------O2<------ZmHOX2a(2)                                         <---------LBD16                 --------->ANAC58<---------AHL20(2)                                  --------->GLK1(2)               <---------ALFIN1<----------DOF2                                    --------->ARR11(3)             ========================HOX2a_HOX2a                                  <---------ARR11(3)             =======================HOX2a_HOX2a                                   <---------AHL20(1)          --------->PCF5    --------->ARR11(3)                                    --------->AHL20(1)       <---------AtMYB61    <---------ARR14(2)                               <---------MYB59<--------       --------->ALFIN1     <---------ARR11(3)         --------->TOE2(3)  <---------PCF2--------->HSFB2a(2) ------->DOF2------>ZmHOX2a(1)------>ZmHOX2a(2)<---------TOE1(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   aaaagagaggtggtcctccacgcgaccaaggatcttttattgattttcgcagttttatctcaaaaaatggattatgggacctaaaatattctggaaaccc  1883500  Previous    Next  AGI:  At2g05200.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 8.3e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 1883049    to: 1887004    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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