Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------ZAT18       <---------ZAT14       --------->ZAT18                                                                     <---------TOE2(3)  <---------ANAC46                                                                         <---------YAB1  <---------ANAC58                                                             --------->AtLEC2  <---------ANAC58                                                             --------->ANAC46 -------->ARR11(3)       <---------ZAT14                                   ------>ZmHOX2a(1)     <--- ---------AHL20(2)       --------->ZAT14                         --------->ZAT18       ------>MYB83 -----AHL20(2)       ------->TEIL               <-----------GT1 --------->ANAC58       ------>MYB46(1) -->GT1--------->ZAT14   --------->ZAT18   <----------DOF2      --------->ANAC58  <-----------GT1<---   aatttcttgtgcaccatgttatgagcctgcactattcatccatttcttttgtaccatgttttgagcatgcactattcctccatgtaaccaaataagatta  1878300                        ------->TEIL                        --------->SPL7                       ------>MYB46(1)                                             <---------GLK1(1)                       ------>MYB83                                      <---------ARR11(3)                       --------->ARR14(2)                   ------>MYB46(1)    <---------TOE2(3)                     <---------MYB59              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <                  --------->MYB52(1)              <-----------GT1    ---------->DOF2               xx ------TOE2(3)--------->ANAC58             --------->YAB1   ------>MYB83 --------->ARR11(3)        -- ------YAB1   --------->ANAC58            <---------YAB1  --------->TOE1(2) <---------AHL20(2)    <--   atattatgcaacttcgaagcaaaccgaacctcacaagtcgatttatcatattctactatacctacaaaactcaaagattttatggatatttgaaatcaag  1878400               ------->TEIL          --------->CCA1(2)           <-------GAMYB                            --------->MYB46(3) <---------MYB52(1)                  <------MYB83                      --------->ETT(2) --------->DOF5.7(2)                 <------MYB46(1)                   <---------ETT(2) -------GAMYB<-------TEIL   --------->DAG2                         --------->MYB46(3)    <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------AtMYB61              <---------MYB52(2)   <-------GAMYB ------->MYB52(2)         ---------->DOF2      --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----TEIL--------->At4g35610----------->GT1   <---------ARR14(2)----------->RAV1(1)   ------>ZmHOX2a(2)   ttcgttatcgagagatgcatctacaattgaaaggtgatttggttgagcatatatgcaaaacaaattgcaacaatcgacagaacaactgatcgttattccg  1878500                                                                            ----------->GT1                                                                       <--------HAHB4                                                                       --------->ATHB51                                                                       <---------AHL20(2)                                                                       -------->HAHB4                                                                       --------->YAB1                                                                   <---------ATHB51                                                                   <---------AHL20(2)                                                                   <---------ATHB12                                                                   --------->ICU4                                                         --------->ATHB12   <---------TOE2(3)                                                        <---------YAB1 <---------ICU4                                                  <---------AHL20(1)  <---------YAB1               --                                                  --------->AHL20(1)  <---------ATHB51       --------                                                  --------->AHL20(2)<---------ICU4          <--------                                                  <---------AHL20(2)--------->YAB1          ---------                     <---------AHL20(2)    ----------->GT1         --------->AHL20(2)    --------->AHL20(2)                   <---------AHL20(2)    ------->TEIL<---------AHL20(2)-------->ATHB1   --------->AHL20(2)       <-----------GT1             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ICU4    <---------AHL20(2)   atttttgttttacacatctattttaaaatgtttcaaaataatgtatgtttaatattttatgatttgcaaataattattaagttatatgaaataaataatt  1878600                                  ---------->DOF2                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           ------>MYB83                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           ------>MYB46(1)           <---------YAB1       --------->AHL20(2)<---------MYB59  <---------YAB1       --------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <--------- --------->YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <---------- ------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                 <---------- ->AHL20(2)  <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <-----------GT1 -AHL20(2)--------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->ANAC46<---------- >AHL20(2)<---------AHL20(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->AHL20(2)     xxxxxxxxxxxx   ttaaaataataatattttttcagagaacctacataagaaagactaccattagagtatgaaaaacaaaaaaaaatacacaaaaactctcttgtaacatttt  1878700           <---------YAB1         --------->ATHB12         <--------HAHB4         <---------ICU4         --------->YAB1        <---------ATHB12        --------->ICU4        <---------YAB1     <---------AHL20(2)     --------->AHL20(2)                                          --------->ARR11(3)    <---------AHL20(2)                                <---------At4g35610                           -    --------->AHL20(2)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <- ------AGL15          *TSS                            <---------GLK1(1)    --------->ZAT18      ----- -------AGL1 --------->AHL20(2)                    xxxxxxxxxxxxxxxx>smallRNA(si3)               <---- -------AGL3--------->AHL20(2)                    xxxxxxxxxxxxxxxx>smallRNA(i)                  ----- -------AG--------->TOE2(3)                    --------->ATHB12  <---------ARR11(3)     <---------ARR14(2) xxxxxxxxx>smallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->ALFIN1      <----   tggaaatttaatcattaaaaaatggagagagcccatagagaggctctctccattggagatgctctaagttcttcaagtgggcaagaagagaaaccgttta  1878800                 <---------MYB46(3)                 --------->MYB55(2)               <------NtERF2               <---------LBD16               --------->ATERF1(1)              <---------DEAR4(2)              <---------RRTF1(1)              <---------RAP2.6(1)              <---------ERF1              ------>NtERF2              <---------ORA47(2)              <---------ATERF1(1)             --------->ATERF1(2)             <---------RRTF1(2)             <---------ATERF1(2)             <---------DEAR3(1)             <---------RAP2.6(2)             <---------RAP2.3(2)             <---------DREB2C(2)             <---------RAP2.3(3)             <---------RRTF1(3)             <---------ANAC46       <----------DOF2    ------>MYB46(1)    ------>MYB83<---------ANAC46  <---------MYB59------>NtERF2                                                                ------- <---------HSFC1(2)                   ----------->GT1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------HSFB2a(1)              <---------HSFB2a(2)           <---------ARR14(2)            ------- --------->HSFB2a(1)              --------->HSFB2a(2)     <-----------RAV1(1)                 ------- --------->HSFC1(2)               ------>ZmHOX2a(1)       <---------MYB46(3)                <-------- ------>TEIL<---------LBD16  <---------GLK1(1)        <---------AHL20(2)             --------->ZAT14 ----------GT1<---------RAP2.3(1)<---------LBD16     <---------AHL20(1)              <---------ZAT14 ---------->AtSPL3           --------->GLK1(1)       --------->AHL20(1)          <---------AtMYB61 -----------AtSPL3         <------ZmHOX2a(1)   <---------At4g35610            ----------->HVH21    -- ---------->AtSPL8    <------ZmHOX2a(1)      <-----------GT1    --------->ARR14(2)   --------->ZAT18 -----------AtSPL8<------NtERF2 <---------ANAC46    <---------CCA1(2)         --------->ALFIN1-------   agtaccttccttttggcggcgggaggagaggatgtcctggaggtaatttagcttatatatttgttggaactgcaattggagtgatggtgcagtgctttga  1878900                                                                                      <---------ARR11(3)                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                                  --------->ZAT14                                                                                  <---------ZAT14                                                                                --------->ANAC46 -->WRKY38(1)                                                                   --------->ANAC58 -->WRKY45                                                                      --------->ANAC58 -->WRKY12                                          --------->TOE1(2)        --------->ZAT14 --DOF2---------->DOF2                            ------->TEIL               <---------ZAT18       -- --------->GT1   --------->DAG2               <---------KAN4(2)<-------TEIL  --------->ZAT18       -- ---->HVH21     ---------->DOF2     <----------DOF2 --------->TOE2(3)   --------->AHL20(2)         --   ctggaaaatcaaaggagataaagtcaacatggaagagacttttgaaggaatgaacctaagcatggttcatccacttaaatgcactccagttcttcgaagc  1879000                                                                                                    -                                                                                               <-----                                                           <---------ANAC55(2)                <------          <-----------GT1                          --------->LBD16               <----------DOF2-----  <----------DOF2                               --------->At4g35610       <---------AHL20(2)  ------- <---------DAG2  <---------ANAC58               ----------->RAV1(2)      <---------WOX13(1)   <------ --------->TOE2(3)                              <---------At4g35610   <---------YAB1          ------- ------>P<---------AHL20(2)              --------->ZAT14   --------->ANAC55(2) <--------------------- ---->MYB46(1)   <---------ANAC58        --------->ARR14(2)----------->GT1--------->AHL20(2)  ------- ---->MYB83  --------->YAB1      --------->ANAC46  <---------LBD16  <----------DOF2           <------   caaccttttttttaatcttacttggttacttctaaactccatgtatactcatctggggaacatgtaataactttgattaatttcttttgttctatagatc  1879100    --------->ARR11(3)    <---------ARR11(3) --------->DOF2 -ZmHOX2a(2) ---ARR14(2) ->ZmHOX2a(2)                                   ------>MYB46(1) -->ARR14(2)                       <----------DOF2    <---------ANAC58 ---ARR11(3)                      <---------ANAC58    <---------ANAC58                             -- -->AGP1                          <---------ANAC58    <---------ANAC46 ----------->GT1     <---------AHL20(2) ---ANAC81                <---------YAB1      <---------MYB59         --------->TOE2(3)   --------->AHL20(2) -->ARR11(3)     ---------->DOF2<-----------GT1 ------>MYB83          --------->TOE1(3)   <---------AHL20(2) ---AGP1   <XXXXXXXXXXXXXXXXXXXXMIR406        --------->TOE2(3)--------->AtLEC2           --------->AHL20(1)   ttcaaagacattcgattacaaaagtattctaattttgctttctccaaacctaattttcgtagttaatgcaaacctgaaaaaaaaaaccaaaatttaatgg  1879200  Previous    Next  AGI:  At2g05185.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22608.1) Range:  from: 1876968    to: 1878216    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g05190.1    Description:  pseudogene, cytochrome P450 -related, blastp match of 34% identity and 2.0e-07 P-value to SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-). (Soybean) {Glycine max} Range:  from: 1878722    to: 1879015    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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