Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->TGA2(2)                             <-----------TGA1                             <-----------HVH21                            --------->bZIP60(2)                        --------->GLK1(1)                            --------->ANAC46               --------->ANAC58      ------>ZmHOX2a(1) ---->ATHB12           ------->TEIL                        --------->ANAC46     --------->TOE2(3) ----YAB1 <---------ICU4 --------->TOE2(2)                 --------->ANAC58    --------->YAB1   <----   attgaaatcaactcatgactctatgaatctacgtcagccatgaactacttcatcaataaacaaggcatacaagagttccaatcctaaacaaactaatttg  1722100                                            <---------ICU4                                            --------->YAB1                                            <--------HAHB4                               --------------->AGL15                               <---------HSFB2a(2)                               --------->HSFB2a(2)                               <---------------AGL15                              ----------------->AGL2                             --------->STY1(2)        ------->GAMYB                      ---------->DOF2       --------->ATHB12  --------->TOE2(3)                   <---------ZAT6        --------->WOX13(1) ------>MYB46(1)              <----------DOF2<---------STY1(2)       <---------MYB52(2)            --------------->AGL15 ---------->DOF2    --------->MYB46(3)   ---------->DOF2        --------->ZAT14   <---------ANAC58 <---------ATHB12 ------>MYB83<---------YAB1        <---------REM1(2) <---------ANAC58 --------->ICU4  ----------->RAV1(1) -------GT1 ===================================MADS_MADS --------->MYB46(3)                      <---   acaatttctcttcacactttagagtaaagcttgctagaaagagcaatcatttacaacaaaccaacatcaaacttatcaaagaagaaatgttttcatgttt  1722200                                   ---------->DOF2                                --------->ANAC58                                                -----                           --------->YAB1     <---------TOE2(3)                   <------MYB46(1)<---            --------->At4g35610 --------->ANAC58                                  <------MYB83<------ ------ANAC46            <---------ARR11(3) ---------->DOF2 <---------YAB1    <---------ANAC46-------   tgtggataagaagaagcagagcatcaaaatcatcaagaaaagagaataaaggtttgatttttatgagaaaaacaaaccttgtgtaggttaagaagtgatc  1722300                                                      --------->ANAC58                                                   --------->ZAT2                                                ---------->DOF2                                               ------->GAMYB                                               --------->AtMYB61                                              <---------MYB55(2)                                              --------->MYB46(3)                                             -------->P                                             ------>MYB83                   --------->GLK1(2)                                             ------>MYB46(1)       ---------->DOF2                                         --------->CCA1(2)     --------->ANAC58            <---------ZAT14                                         <------ZmHOX2a(2)--------->At4g35610              --------->ZAT14                                        --------->ARR11(3)<---------ZAT2    <---------ARR11(3) <---------ANAC46                       --------->AGP1--------->ANAC58      --------->ARR11(3) ->ZmHOX2a(2)          <------MYB46(1)  <---------ARR11(3)<---------At4g35610             <----------DOF2 -------DOF2           <------MYB83    <---------GLK1(1)  --------->ZAT2   <---------GLK1(2) ---ARR11(3)       --------->ARR14(2)  --------->GLK1(1)  ----------->RAV1(2)       --------->MYB52(2) -->ARR11(3)       <---------ARR14(2)<---------------------WRI1--------->ANAC58<----------DOF2    ---   tttcggtggaagtcgataagggatttggttttgcaagtgagagatccaaccaaagctcgcagctgaagcaaaaggaagaatctttttagttgctgtagtg  1722400                     <---------O2                              ----------->HVH21                     --------->bZIP60(1)                     <---------O2                     --------->O2                            --------->O2                  ----------->HVH21                         ------>MYB83                  --------->ANAC46                          ------>MYB46(1)               <---------WRKY12         --------->bZIP60(2)                              --------->DEAR3(1)              <---------WRKY38(1)         --------->ANAC46                                 --------->DREB2C(2) ---------->DOF2     <-----------GT1 <---------bZIP60(1)              <------ZmHOX2a(2)       *TSS      <-----------HVH21 -------->GT1  --------->TOE1(2)                     <-----------HVH21      <----------DOF2    ------   aagaaaataacacatcacatacgacgtcgttttaggcttaaaccgaataagacccgatcaccgacttgacacatctcgcttaaagtctctggtcaaatgg  1722500                                                         --------->ALFIN1                                                         <-----------RAV1(1)                                                     --------->TOE1(1)                                                     --------->TOE2(1)                                                    ------>ZmHOX2a(1)                                                    <---------LBD16                                                   --------->TOE1(2)                                                --------->ARR14(2)                                                <---------ARR14(2)                 --------->LBD16                                         <------ZmHOX2a(2)                ------>NtERF2                                         ==================HOX2a_HOX2a  --------->RAP2.3(1)              --------->WOX13(1)  --------->SPL7------->TEIL     ---------->DOF2 <---------LBD16   --           --------->ANAC58      ===============HOX2a_HOX2a--------->ALFIN1<---------MYB52(1)     ---       <---------------------WRI1========================HOX2a_HOX2a    <------NtERF2         <------    ----------->GT1              <------ZmHOX2a(1)------>ZmHOX2a(2)    <---------ATERF1(1)    <------    <---------ZAT6               =======================HOX2a_HOX2a    <---------RAP2.3(1)    <------ ----->GT1 --------->ANAC58   --------->At4g35610<------ZmHOX2a(2)    <---------DEAR3(1)  --------->CCA1(2)   gaaatagtgtaagaagcaatctaagagacatcagaggacgacgatcgatggatcctcggatgtggcacaaagtcgccgctatttccggtgagatttaaga  1722600          <----------DOF2         <---------------AtSPL8         =============================HOX2a_HOX2a       <---------ARR11(3)         --------------->AtSPL3       --------->ARR11(3)         <---------------AtSPL3      --------->YAB1              --------->DAG2 *TSS--------->ICU4    ===============HOX2a_HOX2a ------->DAG2          ------>ZmHOX2a(2)                               <---------At4g35610 ------->DOF2        --------->ARR11(3)   <---------GLK1(2)  --------->MYB59 ---YAB1 ------>ZmHOX2a(2)      ---------->DOF2              <---------TOE1(3)                      < ---TOE2(3)          <---------ARR11(3) --------->ICU4       <---------TOE2(3)                 <----- ---TOE1(3)  <---------YAB1    <------ZmHOX2a(1)     <------------CBF<---------RAP2.3(3)   <---------   taaagtaatgatcttttgattttgatcttgtgaggaaaggtactgattcggatagaattggtttaggtatggctgctcttggtttgggaacttatggtgc  1722700                                                                        <-----------RAV1(1)        <-----------GT1                                               <----------DOF2    <----------DOF2                                         <---------HSFC1(2) ---------CCA1(2)                        --------->GLK1(2)  --------->HSFB2a(1)                 <---- ----At4g35610                          <---------GLK1(2)   <---------HSFB2a(1)<---------GLK1(1)<---- --RAV1(1)                            ----------->ARR10     --------->HSFC1(2) --------->GLK1(1)-----   tcatgtctttaaaccagagaacccttcttacaaacaggtttagattcttgaaaattgttggaaaattcgatactttgttggatttctgtgagaaagttta  1722800                                                                                        --------->ARR11(3)                                                                                        <---------ARR11(3)                                                                                       --------->CCA1(1)                                                         --------->At4g35610           --------->RVE1(1)                                                         <---------ZAT2              ------>MYB46(1)     ======================RAV  <----------DOF2<------MYB83 <---------At4g35610      ------>MYB83     <-----------RAV1(1)  --------->MYB52(1)   <------MYB46(1)                    --------->ANAC58 -----TOE1(3)      --------->ALFIN1    <-----------GT1   <---------At4g35610      --------->ANAC58 -----TOE2(3)    <---------At4g35610 <----------DOF2    <-----------RAV1(1)  ------>ZmHOX2a(1)      < ---->MYB59    <-----------RAV1(2)   <---------DAG2  --------->ZAT6     <---------At4g35610  --------   ggtttttttgttgttgttcaggtgtggcaaacggcttcactttaccatttggttcacactgctgctcttgtttctgctcctagcaccaaatatcccaaca  1722900                                                                                             <-------                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                        <---------RAP2.6(2)                                                                                      <------MYB46(1)                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                      <------MYB83                                                                     <----------DOF2 <---------AtMYB61                                                                  <---------ARR11(3) --------->MYB111(2)                                                                  <---------ARR11(1) --------->MYB55(2)                                                                  --------->ARR11(3) --------->MYB46(2)                                                                 <---------CCA1(2)   <---------MYB46(3)     <----------DOF2                                      --------->ZAT2  <---------ANAC58 <---------ANAC58   --------->At4g35610                    ------>ZmHOX2a(1) ----------->HVH21        --------->MYB111(1)   <---------At4g35610                    <----------DOF2 <---------At4g35610 <---------ANAC58 ---------MYB52(1)                     ---------->ID1     --------->At4g35610 <---------ANAC58  ----- --->RAV1(1)                      <---------ICU4          <---------ZAT2  <---------ANAC58<------NtERF2   ttgttagctttctcttcttgtactctgtttctctaatctttgtcctttgagagttgatggagctgacatatctttttcttgcttagtttggtggcttgtt  1723000  Previous    Next  AGI:  At2g04890.1    Description:  SCL21 (SCARECROW-LIKE 21); transcription factor. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.1); similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41200.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 1720358    to: 1722601    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g04900.1    Description:  similar to unknown [Picea sitchensis] (GB:ABK22296.1); contains InterPro domain Protein of unknown function DUF423 (InterPro:IPR006696) Range:  from: 1722478    to: 1723828    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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