Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------GLK1(1)    <----------DOF2                 <---------ZAT14     --------->TOE2(3)                 --------->ZAT14   -------->P                 --------->GLK1(1) ------->TEIL                                     <---------WOX13(1) --------->RAV1(1)             --------->TOE2(3)                            <---------YAB1 --------->YAB1   cccacataaacagaaacagagctctgcataaaacatcaacctttatcccaaaaccacatactaaaattccaaaaatttcttattagattgaaatcaaaat  1700900                         --------->MYB52(1)                ------>MYB46(1)                                <---------ICU4                ------>MYB83                                  --------->ICU4              <---------MYB59                                 <---------YAB1             --------->ANAC58                               --------->YAB1             --------->ANAC58                       <---------AHL20(1)           <---------ARR14(2)      <---------TOE2(3)--------->AHL20(2)           --------->ARR14(2)     ---------->DOF2   <---------AHL20(2)        --------->HSFB2a(2) ------->GAMYB          --------->AHL20(2)   <----------DOF2  --------->ZAT14<---------TOE1(3)--------->AHL20(1)                            ---   tcaaacttttgcagaacccaacttcactaacagcattaaagttaacaacttgaataaatttttcataattctcttaaaatcacaaaacaaaaacagagcc  1701000            --------->ALFIN1          <---------ANAC58          <---------ANAC58          <---------ANAC46          <---------ANAC55(1)                                                                 <------        ------->TEIL                         <---------ICU4                                   -------      --------->ZAT18                       <-------TEIL                                      -------      <---------ZAT14                   <---------YAB1                                     <---------At4g35610      --------->ZAT14                 <---------At4g35610   --------->ANAC58               --------->At4g35610     --------->ALFIN1        --------->GLK1(2)        <------ZmHOX2a(1)                <------ZmHOX2a(1) ------->DOF2 --------->ALFIN1        --------->At4g35610   --------->ANAC58   <----------DOF2<------   aaaagaagtgtaccgtgtgtcgaattttgagaagcttatcagatgattcattactaggaagcacgaccgtcgatggctctgctttcttaggaccgctgct  1701100                      <------NtERF2                     ------>NtERF2                    <---------DEAR3(1)                    --------->DEAR3(1)                   --------->ATERF1(1)                   <------NtERF2                          <---------------AGL15                 <---------DEAR3(1)                      ----------------->AGL1                 ----------->HVH21                       ----------------->AG                 --------->ETT(2)                        <-----------------AGL1                --------->ATERF1(1)                      ----------------->AGL2                <------NtERF2                            <-----------------AGL2               <---------ATERF1(1)                       <-----------------AGL3    <---------ZAT2<---------ATERF1(1)               <---------ANAC58         <------MYB83    --------->ZAT2------>NtERF2                     <---------ANAC58         <------MYB46(1)    <---------At4g35610                           ------>NtERF2              ----------->GT1    --------->At4g35610                         --------->ATERF1(1)    --------->ALFIN1 ---At4g35610  ------>NtERF2                   --------->At4g35610   --------->ALFIN1 -->ZAT2      <---------DEAR3(1)               <---------At4g35610 <---------ANAC58 -->At4g35610 --------->ALFIN1              <-----------HVH21      <---------ANAC46 ---ZAT2   <---------DEAR3(1)              <-----------RAV1(1)     <---------ANAC58  --------->MYB52(1)   ggagatagctggctcggtggcgacggcgaagacggtagagaaaccatgtcgctgccttggccaaaattggcgagtgggaaggtaaacaaaccgtctcaga  1701200                                                                                     --------->ARR11(3)                                                                                     <---------GLK1(2)                                                                                     <---------ARR11(3)                                      ---------->DOF2                               <---------RVE1(1)                                  >>>>>>>>>TBF1                            --------->ARR14(2)                               ------------------------>ANAC81             <---------ARR14(2)     <--      ---------->DOF2     <------ZmHOX2a(1)         --------->YAB1    <---------ANAC46    <---------LBD16   gaagaagtgaaagaagagggtttagagaggaaggaagaagaaaagagaagagaatgagaagaggccattactgcgagtattcgcagagatttttcggatt  1701300                                                                                                    <                                                                                                   <-                                   >>>>>>>>>GATA-3                                           --------                                   >>>>>>>>>GATA-4                                           --------                                   <---------ARR14(2)                                     <---------ICU4           <---------MYB46(3)      >>>>>>>>>GATA-1                   <---------ANAC46     --------->YAB1          <---------AtMYB61        >>>>>>>>>GATA-2                   <---------ANAC58    <---------ATHB12          --------->ALFIN1   --------->ATHB12                  <---------ANAC58          --------->ICU4       --------->ATHB12     <---------YAB1                     <---------ANAC46          <---------ATHB51     --------->GLK1(2)    ------>ZmHOX2a(1)                    <---------ANAC58        --------->YAB1    --------->YAB1<---------HSFB2a(1)                    <---------ANAC46  <---------ANAC58 ---------  --------->ANAC58--------->HSFB2a(1)                    <---------ANAC58  <---------ANAC46 <--------  --------->ANAC58<---------HSFC1(2)                     <---------ANAC58  <---------ANAC58 --------- -------YAB1      --------->HSFC1(2)             <-----------GT1     <---------ANAC58------------>CBF   atgcaagaatcagtggtggaagtttctcctatgagtggattcaagttttattcacgtttgcgtttgcgtttgcgtttgcgttttgtttacaataatgata  1701400    <---------ANAC58    <---------ANAC58    <---------ANAC46                                           <-----------GT1 ------------CBF                                          <---------YAB1                         <--- --------ICU4                                            <---------AHL20(2)                      <--- ->YAB1                                                  <---------AHL20(1)                      <--- >HAHB4                           <------ZmHOX2a(1)      --------->AHL20(1)                     ----- >ICU4                        --------->TOE1(2)         <---------AHL20(2)                     <----- -YAB1                       --------->YAB1             --------->AHL20(2)                    <------ -->GT1                     <---------YAB1              --------->YAB1 --------->ARR14(2)    <-------   aaaattgcgttttgttcagtttggaagtgtatcataggaaaaatagaatggtcgctaattatatttatccctgtataggctcaagtaggcctggacgttc  1701500                                                                                              <------                                                                                   <-------TEIL -----                                                                                  --------->CCA1(2)                                                                                  --------->GLK1(2)                                                                                  --------->ARR14(1)                                                                                 <---------GLK1(2)    --------->ARR14(2)                                                           --------->ARR14(2)    <---------ARR14(2)                                                           --------->ARR11(1) ---MYB46(1)     ------>ZmHOX2a(2)                                <---------ARR14(2)  <---------MYB52(1) ---MYB83       <------ZmHOX2a(2)                                 --------->ARR14(2)--------->MYB59 ------DEAR3(2)--------->ARR14(2)                      <------MYB83              <---------ARR14(2) ---->MYB52(2) <---------ARR14(2)                      <------MYB46(1)         ----------->ARR10<---- --TEIL   <---------ARR14(2)                           ----------->GT1         <---------TOE2(3)<---- ---MYB52(1)------>ZmHOX2a(2)                         <---------AtMYB61  <---------GLK1(1)    <------ --SPL7   --------->ARR14(2)                          --------->MYB59    --------->GLK1(1) <---------AHL20(2)   ggttcggatttggatcggatcgggtttggattagttttttttggttttttttgggtttggttattttggatttggaaatctaagattcggtattttaaga  1701600                                       <---------ARR14(2)                                      --------->KAN4(1)                         <---------ANAC58                                      --------->GLK1(1)                         <---------ANAC58                                     ---------->TaMYB80                         <---------ANAC46                                     <---------KAN4(2)              --------->ARR11(3)                                    <---------GLK1(2)               <---------AHL20(2)       <------MYB46(1)            --------->LBD16                   <---------ARR11(3)       <---------MYB46(3)        --------->LBD16                    --------->AHL20(1)       <------MYB83              --------->ANAC58                   <---------AHL20(1)      --------->MYB59            --------->ANAC55(1)                --------->AHL20(2)      <---------AtMYB61          --------->ANAC46                  --------->AHL20(2)            <--- ---TOE1(3)                      --------->ANAC58                --------->AHL20(2)             <---- ---->ARR11(3)                  <---------LBD16                --------->AHL20(2)               ----- -----GLK1(2)           <---------TOE2(3)                      <---------AHL20(2)         --------->ANAC46 -----ARR11(3)          <---------TOE1(3)                     --------->YAB1    <---------ANAC55(2) ---TOE2(3)             --------->MYB59--------->ARR14(2)----------->GT1      <---------AHL20(2)<----   ttttgggtttggttcgggttcgaatttaggtttacccggaatatccaaaactcaaaattttgtataaaaatatattcaaattacttgaaaatacacaatt  1701700                                          <------MYB46(1)                                          <------MYB83                                         --------->MYB111(1)                                         --------->MYB59                                         --------->MYB46(2)                         ------>ZmHOX2a(1)----------->GT1                        --------------->AGL15                        <---------------AGL15                       ----------------->AGL3 --------->DAG2 ------AHL20(2)        ----------------->AGL2---------->DOF2           ----------->GT1 -----AHL20(2)      <---------CCA1(2)--------->DAG2                   ----------->GT1 ---->AHL20(2)    <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  --------->AHL20(2) -----AHL20(1)    --------->AHL20(2)---------->DOF2      --------->AHL20(2)   tttttgaaaaacttgagtatttatatcctaatatagctaaaagtaggtaaagtattcaaaaatatacaaaataagttaaaatacaaatgtaaatgtaaat  1701800  Previous    Next  AGI:  At2g04842.1    Description:  EMB2761 (EMBRYO DEFECTIVE 2761); threonine-tRNA ligase. similar to threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) [Arabidopsis thaliana] (TAIR:AT5G26830.1); similar to hypothetical protein OsI_007412 [Oryza sativa (indica cultivar-group)] (GB:EAY86179.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65674.1); similar to hypothetical protein OsJ_006825 [Oryza sativa (japonica cultivar-group)] (GB:EAZ23342.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Threonyl-tRNA synthetase, Range:  from: 1698463    to: 1701268    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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