Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               ======                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                          --------->ANAC58                                                                                          -----------                                                                                          --------->ANAC58                                                                                          --------->ANAC46                        <---------AHL20(2)                                          --------->AHL20(2) >NtERF2               --------->YAB1                     <---------ANAC46        <---------YAB1<---- -->ANAC58             --------->AHL20(2)      <------NtERF2            ============================= -->ANAC58            <---------YAB1    --------->ICU4    ----------->GT1      <---------YAB1  ------ -ATERF1(1)      ------>NtERF2   <----------DOF2    <-----------RAV1(1) <----------DOF2 <-----------GT1 ->HVH21  ---------->DOF2  ----------->HVH21 <---------DEAR3(1)     ---------->ID1<---------WOX13(1)   cttggtagtcgctaaagggcgactattatatgacactttgtaattagtcgccgaatgttgtcgtaaattagtcgctattttgtgattaatatacgacacg  1670700                                        <---------ANAC58                                        --------->O2 ---MYC2                                <---------O2 -->MYC3                                <---------ANAC58 ---MYC3                                <---------ANAC46 -->MYC2                               <------NtERF2 ---MYC4                               ------>NtERF2 -->MYC4                              <---------RAP2.3(1) -->PIF5                              ------>NtERF2                              xxxxxxxxxxxxxxxx>smallRNA(s) ----ANAC55(2)                       <---------RAP2.3(2)                        ------>NtERF2 ==========================================MYC_MYB                             --------->DEAR3(1) --- --->ANAC55(2)                       <---------DEAR3(1)                      --------->At4g35610  --- ----O2                             <---------LBD16                       --------->At4g35610  <xxxxx ----TGA1a                         <-----------RAV1(1)                    <---------At4g35610 ------>NtERF2 --->TGA1a                         ------->GAMYB                     --------->ANAC58        <------- >HVH21<---------MYB46(3)        <---------At4g35610                 --------->ANAC55(1)  --------->ANAC58 ---PIF5                         --------->At4g35610                 --------->ANAC58     --------->ANAC58 ====bZIP_DOF                --------->YAB1      <---------AHL20(2)  --------->ANAC46     --------->ANAC46 --->O2----------->GT1      ----------->HVH21   --------->AHL20(2)   --------->ANAC55(2)<-----------GT1   tggtaatagtcgttaaatagcgactattctatgacaactgcggcgtgtcattaaatatagtcgcaaaatagacgtaatctgccgactaatatacgacacc  1670800                                                  <---------AHL20(2)               --------->AHL20(2)                                         <---------ANAC46             --------->ANAC58 ------>TOE1(1)                          <---------ANAC58             --------->ANAC55(2) ------>TOE2(1)             <---------WOX13(1)   --------->AHL20(2)   --------->ANAC55(1) xxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------ANAC58             --------->ANAC46        ------- --ALFIN1  --------->AHL20(2)          ------->GAMYB                  --------->ANAC58        <------   tcgtaatagtcgtttaaatagcgactattgaatgactacaacggcgtgtcattaaatatagtcgcaaaatagacgtaattttcgattaaaaaaacacatg  1670900                                                                                   --------->YAB1                                                                           <---------------AGL15                                                                         <---------ANAC46    --------                    ------->TEIL                                         <---------ANAC58   <--------                 <---------REM1(1)   <---------ZAT14           <xxxxxxxxxxxxxxxxsmallRNA(i) ---------                <---------------AtSPL3                        --------->ANAC58    <---------YAB1                --------------->AtSPL8           <---------ANAC58        <---------ANAC58   ---------    <---------MYB52(1)<---------MYB59--------->ZAT18          --------->ANAC58 <---------AHL20(2)---- >MYC3          <---------------AtSPL8           <---------ANAC58   <---------ICU4----------->GT1---- -MYC3        <---------MYB46(3)     --------->ZAT14    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------   taattcgttttgtaagttgttgtacctattttaaacgactacactatttagtcgtgttttagtcacccaaaaattgcctatataatgaaaatttctcgta  1671000                                                                                   <---------AHL20(2)                                                                                  --------->AHL20(1)                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(1)     <-------TEIL                                                                 <---------ARR11(3)   --------->YAB1                                                                 <---------AHL20(2) ->TOE2(1)                                                                        --------->ARR11(3) -HSFB2a(2)                                                                      --------->AHL20(2) ------>AtSPL8        ------------>CBF        --------->AHL20(2)               --------->AHL20(2) <-- >HSFB2a(2) --------->ANAC46                  <---------AHL20(2)         --------->TOE2(3)     <----- ----->ANAC58        --------->YAB1    <----------DOF2                   --------->TOE1(3)  --------- ----->ANAC58----------->RAV1(1)   <-----------GT1   <---------TOE2(3)   ----------->GT1    <-------- ->TOE1(1)--------->YAB1         --------->YAB1     <-----------GT1     ----------->GT1<---------AHL20(2)   cacaatattcattcacaacacaaacacaatacaaataataccttttaaaaaaataaacgtttttgaagaaaaaaacgttaaaaatatatttagttttatt  1671100               <------NtERF2               ----------->GT1              --------->LBD16             <---------ANAC46        <---------ICU4        --------->YAB1                                                                             --       <---------YAB1   --------->YAB1                                                             <-  <---------ZAT6        <--------HAHB4                                                         <----- -------YAB1 <---------ANAC58             <---------MYB46(3)                           --------->ANAC58 ----YAB1    *TSS      <---------YAB1    <---------AtMYB61                        ----------->HVH21<- >AHL20(2)   <---------ANAC58            --------->ALFIN1                <-------TEIL  --------->ANAC58 -AHL20(2)  <---------LBD16       --------->REM1(2)                   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   attagtcttataatggcgggaaactataattatccgagtagcggtggttttaatcgagattggatgtacaagaggttcgaagaaatgacagggaatttgt  1671200               <------ZmHOX2a(1)        <-----------HVH21       <---------ANAC55(2)--------->ARR11(3)       --------->ANAC46   <---------ARR11(3)                                                    <----    <---------ARR14(2)   --------->GLK1(1)                                                    <------    --------->ARR14(2)   <---------GLK1(1)                              --------->At5g28300 --------- ------->At4g35610     <------ZmHOX2a(1)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------ZAT2<---------TOE1(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-------- ------HVH21<-----------RAV1(2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-------- --------At4g35610--------->ALFIN1      xxxxxxxxxxxxxxxx>smallRNA(s)   ----------->GT1  ------>ZmHOX2a(1)   cagcagaatacgtcgcaggagtggaggagttcttgacatttgctaatagccagcctatagtacaaagttgtcgaggtaaattccactgtccttgtgctgt  1671300                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)    --------->YAB1              --------->DAG2                                     <---------ANAC46 -----ANAC46                   ---------->DOF2                                     <---------ANAC58 ---ANAC46             <---------ANAC46                                <---------GLK1(2) >ZAT14         <---------ARR14(2)                       <---------TOE2(3)         <---------ANAC58 -At4g35610     --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------YAB1 -ZAT14--------->AHL20(2)  <--------P                 --------->WRKY18(1)  <---------YAB1  <---------AtLEC2   gtgcaagaataaaaaacatatcgtctcgggtagaaaagttagtagtcatttgtttagtcaaggatttatgccagattattatgtttcgtatatgcatggg  1671400                                <---------ANAC58                                <---------ANAC46                                <---------bZIP60(2)                                <---------ANAC58                               ----------->STF1                                 ---------->DOF2                              <---------TGA2(2)                       <---------TOE2(2)                             ----------->HVH21                        ------->TEIL                             ----------->TGA1                      <---------ANAC46                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ----------->HVH21                      --------->ICU4                     ----------->RAV1(2)  ------>ZmHOX2a(2)     -                  <-----------HVH21                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <----   gaagagcaattgggcaaaactgtcagtattggtgacgttttcatcaaaacacatacaaaacctgatgggacgtatgttgatcgaaagacagagaagattg  1671500                                                                                          -----------                                                                                          --------->ZAT18                                                                                   --------->TGA1a                                                                                   --------->ANAC58                                                                                   <---------TGA1a                      xxxxxxxxxxxxxxxx>smallRNA(i)                              --------->ZAT18------                      --------->ZAT2 <---------ZAT2                            ------>NtERF2   ------                      --------->At4g35610                                     --------->LBD16  <-----                      <---------At4g35610         <---------HSFC1(2)         <---------ANAC46  <-----                      <---------ZAT2 --------->At4g35610         --------->At4g35610    --------->At4g35610          --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------At4g35610    <---------At4g35610 ---------->GT1       ----------->RAV1(2)         --------->HSFC1(2)        <---------LBD16    ------ -----ZAT14    --------->GLK1(2)     --------->ZAT2            <-----------RAV1(2) --------->ANAC58<-   cagagttatatcagaagaatttgcagctgaggcagtctgagctcgaggctgaagcttctactgtttcagatggcacttcgcgggcacgagagctcacagc  1671600  Previous    Next  AGI:  At2g04770.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 1671113    to: 1672072    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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