Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   --                                            --------->ANAC58                                       <-                                            --------->ANAC58                                     ----                                            --------->ANAC46                                     ----              <---------ALFIN1          --------->YAB1                                           ----             ------>MYB83              <---------YAB1                                            <---             ------>MYB46(1)           --------->ICU4                                            <---            ----------->RAV1(1)      --------->YAB1                                             <----           --------->AtMYB61         <---------ICU4                       <-----------GT1     XXXXXXX        --------->ANAC46            <---------YAB1                     --------->YAB1        --------        --------->ANAC58            --------->ICU4                    --------->AHL20(2)     <-------        --------->ANAC58          --------->YAB1                <---------HSFB2a(2)      <-----------RAV1(2)  ------>ZmHOX2a(1)            ----------->GT1       --------->WOX13(1)<---------ICU4    ============ --->ZmHOX2a(1)         <---------ATHB12<---------ICU4          --------->HSFB2a(2)    ------>ZmHOX2a(2)   cttcctactcacaccaacacattctaatcagcctagtaataataataagcaatgtcaatctctcttctacaaataataacttacttcgatctcaggctct  1619900 ----->NtERF2 ------->ATERF1(2) --------ATERF1(2) ------->RAV1(2) ----->ZAT2 ----->At4g35610 ------At4g35610 ------ZAT2                                                                        <---------TOE2(3) -------RAV1(1)                                                            --------->ANAC58 XXXXXXXXXXXXX>MIR783                   --------->TOE2(3)                  --------->ANAC58 ->ARR14(2)  <---------ARR14(2)   --------->ANAC46                   --------->CCA1(2) --ARR14(2)  --------->ARR14(2) <---------ALFIN1     <---------GLK1(1)     --------->ANAC46 =======RAV <---------CCA1(2)<-----------GT1         --------->GLK1(1)<-------TEIL <---------TOE1(3)   gctggctcatcttcatatctgcaattgaaaatcaccacataacatcaacaatttgaaatccgatgtataagattcaaacgaaattagggttttctatcta  1620000                                                                                                 ----                                                                                            <--------                                                                                          -------->ATHB1                                                                                          <--------ATHB1                                                                                          <----------                     --------->TOE1(2)                                                    --------->ATHB12                <---------ICU4                                                            --------->YAB1               <---------YAB1                                                             <---------ICU4             --------->YAB1                           ---------->DOF2                     --------->ATHB51            <---------YAB1                   --------->ARR14(2)         <---------GLK1(2)<---------ATHB51           --------->AHL20(2)           --------->ANAC58   --------->GLK1(2)             <---------ATHB12          --------->YAB1                --------->ANAC58  <---------GLK1(2)              --------->ICU4         --------->ICU4     ------>NtERF2    <---------ARR14(2)      <---------WOX13(1)  <---------YAB1   aacaatatgaaattataatcaatgctacgatgccagaacaataagcaaattttcaaaaaagaatctcgttgatagactctcaaactagacaataattgat  1620100                            <------NtERF2                           --------->HSFB2a(2)                          <---------LBD16                      <-------TEIL                                              <------ZmHOX2a(1) <---------ATHB12 <---------YAB1                      <<<<<<<<<<GATA-1      --------->TOE1(2) -->ZmHOX2a(2)  <---------DOF5.7(2)               ------->GAMYB             --------->TOE2(2) -WOX13(1)    --------->DOF5.7(2)>>>>>>>>>TBF1  --------->At4g35610--------->YAB1 --ATHB5   <---------ATHB12<---------HSFB2a(2) --------->MYB52(1) <---------ATHB12   ccaattgttctcaatcgtttacgattcgtcgggaagaagaagatagaatcaactgaaatcgagtacaaatgatactaacataggaaacagagagggagag  1620200                                                                                             <------ZmHOX2a(2)                                                                                           ------->GAMYB                   --------------------->WRI1                                             --------->MYB46(3)      --------->ANAC58                   ---------->DOF2                                --------->MYB52(1)      --------->ANAC46         <-----------TGA1                                      --------->TOE2(3)      --------->ANAC58         <-----------HVH21                                     --------->TOE1(3)      --------->bZIP60(2)     --------->ETT(2)                                  ---------->DOF2  ----   attaccccaagtcatcgacttcattgtaatcgtcgtcagccattaaagtcgatttgagaaatcgctctccttgctctctcgataaaaccctaacgatcga  1620300                           ---------->DOF2                        <---------ANAC46                   <---------WOX13(1)                        <---------ANAC55(2)               <------------CBF               <---------ANAC46                         <---------YAB1         --------->DEAR3(2)            ----------->HVH21                           <---------AHL20(2)    ------->TEIL        ------->GAMYB   <---------ANAC58          <------MYB83<---------LBD16<-----------GT1     --------->MYB52(1) <---------ANAC58          <------MYB46(1)     --------->TOE2(3)            <- ----->AtLEC2--------->MYB52(1)  *TSS            --------->MYB59 <---------MYB52(1)           -------   tgcaacttaaccgaatgacggagaatgcgtaaagaagactctctatgaagttcggtttttaattgccggttttcttaatgaaccgtctattcagaccggt  1620400                                                                                                 <---                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                           <---------GLK1(2)                                                                                    <---------DEAR3(2)                                                                                    <---------MYB46(3)                             ------->TEIL                                  <-----------HVH21   <-----                         ------->MYC3                                <---------ARR14(2) --------->ETT(1)                         <-------MYC3            --------->YAB1 <-------MYC3       --------->ETT(1)                      <---------ALFIN1        ----------->HVH21 <-------MYC2      --------->ALFIN1 --------AHL20(2)<-----------GT1        <-----------GT1         ------->MYC2     <-----------HVH21 ---->GT1       ---------->DOF2 <---------AHL20(2)              ------->MYC3 <-----------RAV1(2)<----   tttaatttcaaaccccatttaagcccacatgtattttttttttttcccctaacatagccctgggcatgtggtattcgggtcagggtcgggtcggattttt  1620500                                                                     --------->SPL7                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                  <------MYB46(1)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     ----------->GT1              <---------DEAR3(2)                                  <---------MYB52(1)              <------MYB83                                --------->ANAC55(2)              --------->MYB59                                <---------ANAC55(2)             <-------TEIL                                <---------ANAC46               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------ANAC58           <---------ANAC46         <-----------HVH21                                <---------ANAC58         <-----------HVH21          --------->ARR14(2)                                <---------ANAC55(1)   <---------ANAC58              <---------ARR14(2)                               ------>ZmHOX2a(2)      <---------ANAC58    <----------DOF2       <---- ------ANAC46                 <------ZmHOX2a(2)       <---------ANAC46<---------RAP2.6(2) <---------ATHB51 ------GT1                   <---------ARR14(2)      <---------LBD16<---------MYB52(1)   <---------MYB52(1) -----LBD16                  --------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i)   cgggttcgaatttttgggtttagaaattttggatccgtatggttatatcaacaatttcgggtcgggttcggttcggcttcacttcgggtccgataattca  1620600                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <---------------AtSPL8                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        --------->MYB46(3) --------------->AtSPL8                   --------->ANAC55(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  -------                   --------->ANAC46 <---------ANAC58                                 <-------TEIL                   --------->ANAC58 <---------ANAC46        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->ANAC58 <---------ANAC58<---------MYB111(1)          <---------ATHB12 ---   ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-------->P            --------->ANAC46  ------- -----TOE2(3)  --------->TOE1(3)   <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2)   ggtattagttaaaaaaaccataagtaaccaaaactatttcgggtttgagtactacttacccaaactttgtccaaatatacccaaacatacataaaaatat  1620700                      --------->YAB1               ------>ZmHOX2a(2)              --------->CCA1(2)              ===============================HOX2a_HOX2a              <------ZmHOX2a(2)             <---------ARR11(3)             --------->ARR14(2)             <---------ARR14(2)                 --------->AHL20(2)             --------->ARR11(3)                 --------->YAB1                                      -             <---------AGP1                    <---------ATHB12                                    --         ---------->DOF2                       <---------ATHB51                                    <-       --------->ANAC58                  --------->ANAC58                                          --       --------->ANAC46  <-----------GT1 --------->ANAC58                              <---------ANAC55(2)       --------->ANAC58 <---------YAB1------>ZmHOX2a(1)                                --------->HSFB2a(2) ---------->DOF2     --------->ICU4  --------->TOE1(3)                                 --------->ANAC55(2) -->CCA1(1)  --------->AGP1          --------->TOE2(3)                                 <---------HSFB2a(2) ------>TOE2(3)==============================HOX2a_HOX2a                      <---------TOE1(3)   <-- -->RVE1(1)----------->ARR10      <-----------GT1                             <---------TOE2(3)   ---   ccataaaacccgaaagatctgaaattataacaagtttttccttaagccaataatataaaacaagaagtaaaccttgttttaagcttgttccataactcaa  1620800  Previous    Next  AGI:  At2g04630.1    Description:  DNA-directed RNA polymerase II, putative. similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT5G51940.1); similar to DNA-directed RNA polymerase, 14 to 18 kDa subunit [Medicago truncatula] (GB:ABN08140.1); contains InterPro domain RNA polymerase Rpb6; (InterPro:IPR006110); contains InterPro domain DNA-directed RNA polymerase, 14 to 18 kDa subunit; (InterPro:IPR006111); contains InterPro domain RNA polymerase subunit, RPB6/omega; (InterPro:IPR012293) Range:  from: 1618933    to: 1620333    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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