Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------HSFC1(1)                                                                           <---------GLK1(2)                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                       ==============================                                                                       ------>ZmHOX2a(1)                                                                      --------->TOE2(3)                                                                 <-------TEIL  --------->HSFB2a(2)                                                                 =============HOX2a_HOX2a                                                                ==============HOX2a_HOX2a                                                                <------ZmHOX2a(2)                                                               --------->ARR14(2)              ------         <----------DOF2  <---------------AGL15                <---------ARR14(2)              <----- ------>LBD16             --------------->AGL15               <------ZmHOX2a(1)<---------HSFB2a(2) -----LBD16            <-----------GT1         --------->MYB46(3)------>ZmHOX2a(2)             <-----   cagagttttagctttgttagcaattttactcaattaagcattgaattgaacaatcgtttctgaaggatccatcctcatattctcgaaatctatagcaagc  1607300                                                            <---------ARR11(3)                                                            --------->ARR14(2)            <---------ANAC58                                <---------ARR11(1) ------>ZmHOX2a(2)                                          <---------ARR14(2)      ----------->HVH21 =======HOX2a_HOX2a                                        <---------CCA1(2)      ----------->RAV1(2) --->At4g35610        ----------->HVH21            --------->ARR11(3)       <-----------GT1 ----At4g35610     --------->ZAT6              <---------AtLEC2      <---------At4g35610 ----ZAT2   <---------ANAC58    ------>ZmHOX2a(1)  <---------ARR11(3)--------->At4g35610 <-----------RAV1(2)   tgatccaaattgtttcgtttcacactgacatctccttcattcagtttttgcaagatgtcccatatctgtgtagctgattcacttccctgaaccaggttga  1607400                   --------->REM1(2)                  --------->ALFIN1                 ------->MYC2                 <-------MYC2                 <-------PIF5                 ------->PIF5                 ------->MYC3                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <-------MYC4                 ------->MYC4                 <-------PIF4                 <-------MYC3                 ------->PIF4                <---------ANAC46                <---------ANAC55(2)                <---------TGA1a                <---------O2                                                                       --                --------->O2                                                                       --                --------->TGA1a                              --------->KAN4(2)                  <----               <-------TEIL    --------->YAB1               --------->KAN4(1)          <---------AtMYB61               ------------>OsbHLH66                        <---------KAN4(1)        <----------DOF2              <------------OsbHLH66                       <---------GLK1(2)         <---------ANAC58    <-----------HVH21         <-------TEIL          ----------->HVH21               <---------ANAC58   actcattgtcatctaggcacgtgtagataacattcatagctcttccattaaactttgacagattattctcttctcagtctagtttggctttggtttcaac  1607500                                     --------->ANAC46                                --------->ARR14(2)                                <---------ARR14(2)                              --------->HSFC1(2)                              <---------HSFC1(2)                              --------->HSFB2a(1)                        ---------->DOF2            <---------ZAT18                       <---------WRKY45            --------->ZAT14                       <---------WRKY38(1)     <---------HSFB2a(2)               <-------GAMYB  <---------HSFB2a(1)  <---------ZAT14                  --------->MYB52(2)     --------->ARR11(3)<---------WRKY12        --------->HSFC1(1)              <---------YAB1      <- ------->TOE2(3)      --------->WRKY18(1)      --------->HSFB2a(2)     ------>ZmHOX2a(1)           -- ------->TOE1(3)   <---------AtMYB61 --------->ANAC58         ------->TEIL   ------>ZmHOX2a(1)   ---- -----ALFIN1  <-----------RAV1(1)    --------->ANAC58      --------->AtLEC2  <---------At4g35610-----   accttaagaccctcttctgttgtggtcaaaggaggttcccagccatcttctagagcagtccatgcatcttctccttctcctctgattagttgtatcatcc  1607600                                                                                *TSS                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                               --------->GLK1(1)                                                                              <---------AGP1                                                                              --------->ARR11(3)                                                                              <-----------ARR10                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                              <---------ARR11(3)                                                                             <---------GLK1(2)            --------->YAB1                                               --------->LBD16            --------->TOE1(3)                                           --------->ANAC46     <---------HSFB2a(2)                                               <---------LBD16     --------->HSFB2a(2)   ------>ZmHOX2a(2)                     --------->TOE2(3) --------ARR14(2)      <---------YAB1                            --------->TOE1(3)            <------ ------->ARR14(2)  <----------DOF2                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->LBD16--------->TOE2(3)                                 ------>NtERF2<---------TOE1(2)  <------ ---->ANAC55(2)   --------->TOE2(3)<-------TEIL              <---------ALFIN1<------ZmHOX2a(1)-------   gtattttccagtaaccataacctttgtgatcgagaggtacaggtctcatgagttctgacttcgacacccttaatccgcaggatctcaacttgtattaagt  1607700                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                  <------ZmHOX2a(2)                                                                                  --------->CCA1(2)                                                                                 --------->ARR14(3)                                                                                 <---------AGP1                                                                                 --------->AGP1   <--                                                                                 --------->ARR14(2)                                                                   --------->RAP2.6(3)      ---------               <---------At4g35610                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <---------ZAT2                                  xxxxxxxxxxxxxxxx>smallRNA(i) <--------           <-----------HVH21                                 ----------------->AGL3      --------->ALFIN1          <---------DEAR3(2)                                 <-----------------AGL1    <---------ANAC58          <------MYB83                                       ------------>CBF    <---------ARR11(3)          <------MYB46(1)                           =====================================HOX2a_HOX2a         --------->MYB59                   ================HOX2a_HOX2a           --------->GLK1(2)<--        <--------P                       <---------ARR11(3)  ----------------->AGL1    <---------ANAC46      --------->ZAT2          ------>MYB83 ------>ZmHOX2a(2) ----------------->AG<---------ARR14(2)      <---------ZAT2          ------>MYB46(1)------>ZmHOX2a(1)<---------------AGL15    <---------ANAC58      <---------TGA1a      ----------------->AGL1   <------ZmHOX2a(1)            --------->ARR11(3) ---ANAC55(2)  ----------->RAV1(2)       --------->ARR11(3)  ----------------->AGL2------>ZmHOX2a(2) ---ANAC55(1)  --------->At4g35610     <---------YAB1    --------->WOX13(1)      <---------ARR14(3) -->ANAC55(2)<---------WRKY38(1)     --------->CCA1(2) ------------>CBF        ----------->ARR10  ---   gtttactcaggtcggtcacctgctctgataccaaatgtgatatgatcctggtgaggaatcaatcccaatttcggcacttggaagatctggagtggatatt  1607800                                                          <------ZmHOX2a(1)                                                ------>NtERF2                                               <---------TGA2(1)                                               --------->bZIP60(1)                                               --------->ANAC58 -->KAN4(2)                                    --------->TGA2(1) ---TaMYB80                                    <---------bZIP60(1) --GLK1(1)             ---------->DOF2         --------->ANAC46 -ARR11(3)     --------->ANAC46                --------->ANAC58 >ARR11(3)--------->ANAC58                  ----------->TGA1                --------->YAB1          x -------HSFC1(1) --------->ANAC58           ----------->HVH21              <---------YAB1   <------ZmHOX2a(2) >ARR14(2)--------->ANAC58                 <---------WOX13(1)     ---------->DOF2          <---------ARR11(3) -ARR14(2)--------->ANAC46               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       <---------HSFB2a(2) -------HSFB2a(2)--------->ANAC46  <---------WOX13(1) ---------->DOF2   <----------DOF2    --------->ARR11(3) ------>HSFB2a(2)--------->ANAC58--------->ATHB12 ----------->RAV1(1)  <---------DAG2  ---------->DOF2   ctcgaaatagagacgacacacgactcaaagacggatgatggattgaatgacgccacaaaaggatgtggaaaagccttttgataagtcgagaaagatcaaa  1607900                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  ------>ZmHOX2a(2)                  <-------TEIL                 <------ZmHOX2a(2)                <---------ARR14(2)                --------->ARR14(2)                ------->TEIL       --------->ANAC58  ------>ZmHOX2a(2)       --------->ANAC46--------->ARR11(3)                                        <---------ANAC55(2)       --------->ANAC58<---------ARR11(3)           ---------->DOF2  --------->YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)          <---------YAB1        --------------->AGL15   ---------   attcgacatacgaaaatggatccatgatctatttttaagagagagtttttgataaaaagatagatagtttctcataagagattacatgagtttataaaga  1608000                                                <---------ANAC46                                           <---------HSFB2a(1)                                           --------->HSFB2a(1)         <---------AHL20(2)                                           <---------HSFC1(2)      <--------HAHB4                                           --------->HSFC1(2)      <--------ATHB1                                          <---------TOE1(3)        --------->YAB1                                          <---------TOE2(3)        <---------ICU4                                          <---------TOE2(2)        --------->ATHB51                                          <---------TOE1(2)        -------->HAHB4                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  --------->KAN4(2)               --------->AHL20(2)                                  --------->ARR14(2)              <---------ATHB51                                  <---------ARR14(2)              --------->ICU4                                 <----------TaMYB80               <---------YAB1                                 --------->KAN4(1)              --------->YAB1                   --------->CCA1(2)  <---------HSFB2a(2)  ----------->RAV1(1) >>>>>>>>>TBF1    <----------ID1 <---------KAN4(1)        --------->ANAC46     <---------GLK1(2) ------------------------>ANAC81<---------KAN4(2) <---------HSFB2a(2) <---------AHL20(2)           <- ->DOF2       ---------->DOF2   ---------->TaMYB80--------->HSFB2a(2) --------->AHL20(2)   ----------   gaagaagaagagaagagaaagagacaagtcttggaatatactcgaaggttgcctagaaacacaacataataattaaatatagaatttgaatagaaaagac  1608100                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               ------>MYB46(1)                                                               ------>MYB83                                                              <---------ALFIN1                      -                                                             --------->MYB46(3)       <---------ANAC58                                           ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(i) <---------YAB1           <---------ICU4          <-----------TGA1        <-----------GT1            <---------ANAC46 ---------DOF2                     <-----------HVH21      <-----------GT1             <---------ANAC58 >DOF2     --------->YAB1       <-----------GT1<---------WRKY18(1)            xxxxxxxxxxxxxxxx>smallRNA(i)   cctttggcttcaaaaatgacccttgaacttctattttcgtcactcctcttgaccatcaaattacccacttggtttgggctcttcttgggcttgtaataga  1608200  Previous    Next  AGI:  At2g04590.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.6e-28 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 1607032    to: 1607680    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g04600.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13865.1) Range:  from: 1608073    to: 1609755    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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