Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <-----------ARR10                                  ------>ZmHOX2a(2)                                          <---------ARR14(2)                                <------ZmHOX2a(2)              <------MYB46(1)             <---------ARR11(3)                               --------->ARR14(2)              <------MYB83                <---------ARR11(1)                               <---------ARR14(2)       ------>ZmHOX2a(2)        ------->MYC3              <---------At4g35610              <---------ARR11(3)     <---------ARR11(3)         <-------MYC3            <-----------RAV1(2)                <---------AGP1     --------->ARR11(3)----------->GT1    --------->ARR14(2) <-------TEIL                  --------->AGP1 ---YAB1      <---------HSFB2a(1)        <---------CCA1(2)--------->At4g35610      <----------DOF2 ->HVH21      --------->HSFB2a(1)--------->ALFIN1  <---------CCA1(2)     <----------ID1    --------->ARR11(3)   ttgatatgatcttggaaggtttgtaatgtgaaaacgtgtggccaaatctttccaaatctcagatgcatcactaaaacgaagaatgcttttatagatctgt  1561300                                                                    <---------MYB46(3)        -------                              <---------ZAT14                   <---------ANAC46             <-------TEIL                              --------->ZAT14      --------->ARR14(2)                       <------ZmHOX2a(2)                            --------->ANAC46       <---------ARR14(2)                      --------->ARR11(3)                          <-----------GT1         ------>MYB83  <---------ANAC58           <---------ARR11(3)                       <---------GLK1(1)          ------>MYB46(1) <---------MYB52(1)  --------->CCA1(2)                      <---------ARR11(3)        <---------MYB59 <---------ANAC58     <---------ARR11(3)                      --------->ARR11(3)       ----------------->AGL1                --------->ARR11(3)               --------->GLK1(2)  <-----------RAV1(1)  ------>ZmHOX2a(1) <-----------GT1   --------->AGP1   tttgaaaccgagtttagaatccaagatttcactaaactgttgcatcgtgaccaaatcctgaacatagcgtttgtttaactaggtcgagatatagatccat  1561400                                                               <---------------AtSPL8                                                               --------------->AtSPL8                                                            <---------ICU4                                                            --------->ATHB51                                                           <---------YAB1                                                           --------->ICU4                                                         --------->YAB1        --------->TOE1(2)    --------->ANAC58                                     <---------ICU4        --------->TOE2(3)    --------->ANAC46                                    <---------YAB1       ------->TEIL    --------->ANAC58                                  <---------ICU4        --------->ARR14(2)      -  ---------->DOF2         ---------->DOF2             --------->YAB1        <---------GLK1(2)      -- --------->YAB1       ------->TEIL                   <---------ATHB12       <---------ARR11(3)     <- -->WOX13(1)     <----------DOF2                   --------->WOX13(1)       <---------ARR14(2)     <-   caataaaagcaatcttgttctttgcatctaaagaagttttcatcgctatatgccaatcatcataatttgtaccatcaagaacctcagaaattatagaaat  1561500                                                                                            <--------                                                                                           --------->MYB52(1)                                                                                           -------->P                                                                                      <------ZmHOX2a(1)                                                                                  --------->LBD16           <---------ZAT6                                      <---------ANAC46  ------->GAMYB-------       <---------YAB1                                          ----------->GT1  <---------LBD16  <------ZmHOX2a(1)                                           <-----------------------TaNAC69(2) -------->LBD16                                         <---------ATHB12       -------->P--------->MYB46(3) ------->HSFB2a(2)                                    --------->WOX13(1)       --------->MYB52(1)   < --------HSFB2a(2)       --------->CCA1(2)          <---------YAB1           --------->MYB46(3)   <-- --------LBD16          --------->ARR11(3)      <---------GLK1(2)           <---------KAN4(2)------->GAMYB   tccaggattatcactgttagaaagatgatatggagaatgaatactatctggattatcaatcgatgatgtataaacgggaacaaccggaggaacaaccgga  1561600                                                                                                   --                                                                                                 ----                                                          <---------ICU4                       ------   --------->MYB52(1)      --------->MYB52(1)             --------->YAB1                    ------->TEIL <---------HSFB2a(1)     --------->MYB46(3)              <---------YAB1                --------->MYB52(1) --------->KAN4(1)       --------->KAN4(1)             --------->YAB1                 ----------->TGA1 --------->MYB46(3)      <---------HSFB2a(1)           <---------ICU4  <-----------GT1----------->HVH21 -LBD16                 <---------KAN4(2)    <---------ZAT18 <---------ICU4         --------->At4g35610 -->LBD16             <------ZmHOX2a(1)     <---------ANAC58 --------->YAB1         <---------ZAT2 -- ---------KAN4(2)   <---------TOE1(2)       <---------ANAC58<---------YAB1          --------->ZAT2 -- ----ZmHOX2a(1)--------->MYB52(1) <------ZmHOX2a(1) --------->YAB1<---------YAB1    <---------At4g35610   ggaacaatcggagaaacaatcggaggaacaatcggaggaatttctggcgaactctcatcatcatcatcacgattcacttgtcttcgagctgacgaagcta  1561700                                                                                              -------                                                                                     --------->ANAC55(1)                                                                                     --------->ANAC58                                                                                     --------->ANAC55(2)                                                                                     --------->ANAC58                                                                                 --------->LBD16   --                                                                                 ------>NtERF2------>MYB83        ------>ZmHOX2a(2)                                                       --------->ANAC46   --    <---------YAB1                             <---------ARR14(2)              --------->RAP2.6(3) <- ------->ANAC46                  --------->MYB46(3)                            <---------LBD16------>MYB46(1) ----->REM1(1)                  >>>>>>>>>>>>>>>>>LFY                         <---------ARR14(2)   <-- --->CCA1(2)           <---------ANAC58        --------->GLK1(2)          <---------YAB1    --------- ------->ANAC58        <---------ANAC46        --------->ARR14(2)------>ZmHOX2a(2)   <---------ANAC55(2) ------->ANAC58        <---------ANAC58 *TSS  <---------GLK1(2) <---------WOX13(1)<---------MYB52(1)   cacgagatgatcgacgagggattttgcgagttacaaccattgttaacagaatctgaagaaaacttgatcgatatttgtgattccggcacgtaaaccaaac  1561800                                   ---------->DOF2                                 <---------YAB1                               --------->YAB1                      --------->WOX13(1) -->MYB52(1)        ------------>CBF                 <----------ID1 ------->GLK1(2)    <------ZmHOX2a(2)              --------->MYB52(1)                               - ----->TEIL  >>>>>>>>>TBF1   --------->GLK1(2)   <---------MYB52(2)                              ---- --------ARR11(1)  --------->ARR11(3)       --------->ANAC58                                     ---- -------ARR14(1)   <---------ARR11(3)       --------->ANAC58  --------->GLK1(2)   <-------TEIL  ----- >AtMYB61 >>>>>>>>>TBF1  --------->YAB1   ---------->DOF2 >>>>>>>>>TBF1------->TEIL--------->ATHB12<-   gaatctatcgaagaagaagaagatcaatgagaatcatcaaagaacaaagcaaaaaacgaagaagaatcgaatgaattttgaaaattcattgctctgatac  1561900                               ----------->GT1                             ---------->DOF2                       =================bZIP_DOF                       ==============================bZIP_DOF                       <---------TGA1a        <---------GLK1(2)           ------------>MYB.PH3(2)          <---------TOE1(3) -------->YAB1         <---------O2         <---------TOE2(3) ----->YAB1======================MYC_MYB  ---------->DOF2                ----------->GT1 ----->TOE2(3)        <-----------------------TaNAC69(2)          --------->YAB1 ------------>AGL1   --------->CCA1(2)--------->DAG2           --------->YAB1      --------->LBD16 --------YAB1 <---------MYB46(3)    ---------->DOF2         <----------DOF2      <---------LBD16   cataatagaaacaagtttgttagagacgagagaaagaaaaaaggtaaaggttctctgtatttcttttatagtaagtggcaaaacccggtttatcttatac  1562000                                                                                                 ----                                                                                                -----                                                                                         --------->MYB111(1)                                                                         --------->AHL20(2)   -------                                                                <----------DOF2          --------->MYB52(2)                                                             <-----------GT1 --------->CCA1(2)<------                              --------->ZAT6                --------->AHL20(2)           <---------MYB46(3)                        ----------->GT1         --------->YAB1  <---------DAG2          <--------P   cggtttacattactgaaacaaatgtatggttatctctaaaccatactctattatgtccaaaattaacttttcccataatatacaagaggggtagttccaa  1562100 --------->ZAT14                                                                          ------->TEIL <---------ZAT14                                                                          <-------TEIL <-------TEIL                    <---------ZAT18                                      <---------TOE1(2) --------->ZAT18                 --------->ZAT18                                     ------>ZmHOX2a(1) ----->DAG2        <---------TOE2(2)                                           --------->TOE1(1) ----->DOF2---------->DOF2<-----------GT1                                     ------>ZmHOX2a(1) -->HSFB2a(2)      <---------TOE1(2)                               <---------GLK1(1)--------->TOE1(2) ---HSFB2a(2)     <---------MYB52(1)  --------->GLK1(2)            --------->GLK1(1)--------->TOE2(2)   aagtacacagtttgaaagtcgtaagttttcacttgtggacaatctatggccttggaaatttttgtggagaaatccatgtcctcgttcctacgtacattac  1562200  Previous    Next  AGI:  At2g04490.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 1557257    to: 1561740    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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