Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ALFIN1                                 ------>MYB83                                 ------>MYB46(1)                                               <-----                                 -------->P                     ---------->DOF2                ------                     ----------->GT1 <----------DOF2--------->ARR14(3)                         ------                <---------YAB1  ----------->RAV1(1) <---------ARR14(3)                 --------->MYB52(1)    --------->At4g35610 --------->AHL20(2)          --------->ARR11(3)             --------->ZAT6 ----->YAB1   <---------ICU4   --------->AtMYB61    --------->GLK1(2)            ----------->RAV1(1) -->WOX13(1) --------->ICU4   --------->MYB46(3)    <---------ARR11(3) --------->ICU4--------->At5g28300   tacaagagcagagccattatgaaagattaaaaaccaacactttctcaacaccaaaatcttgaaactaaaagtattgatttttccaacagtaactgaaaat  1534700                                                      --------->ANAC58                                       <---------At4g35610       --------->ANAC58                                       --------->At4g35610       --------->ANAC58                                  --------->ANAC58    --------->ANAC58                          <------ZmHOX2a(2)           --------->ANAC46                  --------->AHL20(2)  --------->ANAC46        ===============================HOX2a_HOX2a             --------->TOE1(2) ----ARR11(3)            --------->ARR11(3)           --------->AtLEC2  --------->AHL20(1) --->ARR11(3)            <---------ARR11(3)         ---------->DOF2     <---------AHL20(1) --->GLK1(2)    <----------DOF2   --------->ANAC58------>ZmHOX2a(1)     <---------ARR11(3)      -----   ctatacaaaacatataaacttttgtaagatcaagacaaggaagctccatttcctacaagcaaaaaccaagtcaaaatatttcacatacgaataaatccaa  1534800                                                                 --------->AtMYB61                                                     <-----------RAV1(2)                                                  --------->ARR14(2)                                                  <---------ARR14(2)    ---------->DOF2                                             --------->ANAC58    ------->GAMYB                                             --------->ANAC58   --------->MYB46(3)                ---               ----------->GT1           --------->HSFB2a(2)   --------->ANAC58        <-----------GT1       <------ZmHOX2a(1)                 <---------HSFB2a(2)   --------->ANAC58     --------->TOE1(3)   ---------->DOF2                   --------->WOX13(1)      --------->MYB46(3)     --------->TOE2(3) ----->DOF2  ---------->DOF2    --------->ICU4   --------->GLK1(1) ---------->DOF2  <----------DOF2   aagaataaaggaccacaaagaaaaaacgagagaaatgatcaatctcgaagcaaatccaggcgaacaaccaaaagaaaagaatcaaactttaacaattcca  1534900                                                                           <-------TEIL            ----------->RAV1(1)     ----------->GT1                    <---------YAB1           --------->MYB46(3)  ---------->DOF2                     --------->ARR11(3)  --------->YAB1             --------->YAB1                   <------ZmHOX2a(1) ------>AtMYB61      --------->TOE2(3)                       ----------->GT1                   <-----   ccaaaaataagaaaccacagaaacatcaaaatcaaaagatgtgaaactagaaacagaagaaacaggaaatatcaagattcatagattgaacaagatggag  1535000                                                                 <---------MYB46(3)                                                        <---------ANAC58                                                        <---------ANAC58                                                       <-------TEIL                                                    <---------At4g35610    <---------ATERF1(1)                          --------->SPL7            --------->At4g35610  <------NtERF2                        <---------SPL7             ----------->ARR10   <---------DEAR3(1)                       ==========================HOX2a_HOX2a    <---------DEAR3(1)                       ------>ZmHOX2a(2)       --------->ZAT2   --------->ALFIN1                      ===========================HOX2a_HOX2a    <---------AtMYB61                      <---------------AtSPL3   <---------At4g35610  <---------MYB46(3)                      <------ZmHOX2a(2)   <------ZmHOX2a(1)  --------->ALFIN1  --------->DAG2      --------------->AtSPL3   --------->At4g35610 <---------AtMYB61           ------ ---------->DOF2     --------->ARR11(3) <---------TOE2(3)    <---------AtMYB61       ------>ZmHOX2a(1) -----ID1            <---------ARR11(3) <---------TOE1(3)    <-----------RAV1(1) ------>ZmHOX2a(1)<--   acaaaaagagagggagggagagagatcgtactgccatggattaaggaagagctgagatgcgttgtggtggtggtcgtcgtctccttcctctggtttcctc  1535100                                                                <---------CCA1(1)      <---------MYB52(1)                 <----------DOF2                                <---------RVE1(1)     <-------GAMYB               *TSS                                            --------->ARR11(3) --------->TCP20     <----------DOF2                                           <---------ARR11(3) --------->PCF5   <---------At4g35610 ----------->GT1                        --------->YAB1      <---------PCF2 >ZmHOX2a(1)  <-----------GT1                          <------ZmHOX2a(1)  <----------DOF2     <------ --------DOF2<-----------GT1      <---------LBD16 <---------REM1(1)      ----------------->AGL1   ctttcagcttttgttttatcttttttggtgaaattttggggattaggcgaaaatgtaggagccatgatattttgggccttaatgggcccgttatgtcttt  1535200                                                              --------->LBD16       <---------ARR14(2)                                                            --------->TOE1(2)       --------->ARR11(3)                                                            --------->TOE2(2)       <---------ARR11(3)                                                            <---------LBD16         --------->ARR14(2)                                              <----------DOF2 <---------LBD16      <---------HSFB2a(1)   <-----------GT1              <---------ZAT14            ----------->RAV1(2)<---------HSFB2a(2) ----DOF2          ------->TEIL --------->ZAT14    <<<<<<<<<GATA-1            --------->HSFB2a(2) <--   tttttttgctattttgttttgaacgtttcaacagtgaagtaaaccattcttttatctataaacctggggaaacatttcttatggaagatttgttctgagg  1535300                                                                   --------->ICU4                                                                  >>>>>>>GRF7  <-----------TGA1                                                               <-----------HVH21                                                           --------->GLK1(2)   <-----------HVH21                                                          <---------GLK1(2)   --------->ANAC58                                                     <---------ANAC46         --------->bZIP60(2)   <                                                  <-----------RAV1(1)      --------->ARR14(2)      >>                                        --------->MYB46(3)<---------ARR14(2)  --------->O2<---------AHL20(2)            --------->ARR11(3)         -------->P =================RAV     <---------ARR14(2)      <-            <---------ARR11(3)       <---------MYB55(2)  <---------At4g35610  --------->ANAC46    ---       ------->GAMYB <-----------HVH21------->GAMYB<-----------HVH21<------ZmHOX2a(1)     --------->AHL20(2)    --------->MYB52(1)               --------->MYB46(3)<-----------RAV1(2)<------ZmHOX2a(1)      <--- --------DOF2  --------->GLK1(2)     <---------MYB111(2) --------->At4g35610  --------->ANAC58<------   ctttagcaacgggagataatcttcgtcgcagacacatcaacaaccattctatatgtcgcagatgctgtcaggatgaggaaacgtcacagcatttattttt  1535400                              <---------ARR14(2)                           --------->ANAC58                           --------->ANAC58                           <------NtERF2                          <---------ZAT18                          <-------TEIL                          ------>NtERF2                         <------MYB46(1) ---------WOX13(1)       <---------ANAC58                       <------MYB83                  ------- >>>>>>>ARR2             <---------ANAC46                       <---------MYB46(3)          <------ZmHOX2a(2) -----------CBF          <---------ANAC58               --------->MYB46(3)   <----------ID1--------->ARR11(3) ------>ATHB12          <<<<<<<<<E2Fd         --------->YAB1   <---------DEAR3(1)          <---------ARR11(3) ------YAB1             <<<<<<<<<E2Fc        <---------ATHB12  --------->ALFIN1       *TSS<---------GLK1(1) ---AHL20(2)        --------->ALFIN1       --------->ANAC46    <---------AtMYB61 ---------->DOF2   tgattgtttttatgctcaacaggtttggcgcgcatcgggcattccccatcatattctaacaagcgttggtgcatcggtagagacaaagttggagatcatt  1535500                              <---------MYB52(2)                          --------->LBD16                         --------->ANAC58                         --------->ANAC58                         ------->GAMYB                         --------->ANAC46                                                      ------                         --------->RAP2.6(2)                            ----------->GT1        <-----                        --------->MYB46(3)               --------->ALFIN1          <---------ZAT2                       -------->P --------->TOE2(3)    <---------ANAC46<------ZmHOX2a(1)   <--------- -->KAN4(2)           --------->MYB52(1)      <----------DOF2   <----------DOF2    --------->ZAT2----   ctatcaagaattttggctaaaaatcaaccgcaactatctcaacttgcactttggattatgtggagactttggaggagtagaaaccagcttgtttttcagc  1535600  Previous    Next  AGI:  At2g04410.1    Description:  similar to NOI [Arabidopsis thaliana] (TAIR:AT5G55850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45143.1); contains InterPro domain Nitrate-induced NOI (InterPro:IPR008700) Range:  from: 1533694    to: 1535115    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g04420.1    Description:  nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G25270.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 1535486    to: 1536247    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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