Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->At4g35610                                                   --------->RAP2.6(2)                                                   ----------->RAV1(1)                                                ------------------>SPL14                                               --------->MYB46(3)                                             --------->MYB52(1)           <----------DOF2                  --------->ARR14(2)           <---------DAG2                   <---------ARR14(2)        <---------ALFIN1              <---------WOX13(1)   <---------MYB52(1)               --------->ATHB12<------NtERF2  <---------RAP2.6(3)              <---------YAB1 --------->PCF2                                    - <---------ANAC58           --------->ZAT6 <------ZmHOX2a(1)                                    ----- <---------ANAC58      --------->ATHB12  <---------TOE2(3)                   ----------->GT1    -----   atgccgttctccactttaagacgcttgattacactagatgattgaggaaacggccgcacaagaggggaaacagatagcaatgtgaaatagagagaagcag  1526600                                            <------NtERF2                                         --------->ATERF1(1)                                       <---------DEAR3(1)                                       --------->DEAR3(1)                                       <---------ANAC46                                      --------->RAP2.3(1)                                    --------->DEAR3(1)                                   <---------LBD16                                 <---------ALFIN1   <---------MYB46(3)                        <---------ANAC58 <------NtERF2                        <---------ANAC58<-----------HVH21<---------YAB1 <---------ATHB51           --------->ANAC46--------->ZAT18<---------ANAC46              <---------YAB1 ----------->GT1        <---------ANAC46------>NtERF2 --------->WRKY18(1)--------->ATHB12 ---------->GT1    <------NtERF2 --------->REM1(1) --------->ALFIN1 --------->HSFB2a(2) ---->ANAC58      ------>NtERF2 <---------ZAT14 --------->DAG2<------MYB46(1) ---->ANAC58------>NtERF2 --------->ALFIN1<---------DEAR3(1)  <------MYB83                <----------   ggaaggaaaaatcccgacgctggcaagcgtgggctacaccggcgtcggagaaggtggtcaagataggtttctcgattattggaccagagagctatcacag  1526700                                        ----------->GT1     --------->ATHB12                                    ---------->DOF2         --------->ATHB51           <---------ICU4                              --------->AHL20(2)           <---------YAB1      --------->ARR14(2)                <----------DOF2    --------->YAB1       <---------AHL20(2)     <---------ARR14(2)         <----------DOF2  <---------AHL20(2)            --------->AHL20(2)     ------->TEIL  <-------        <---------ANAC58 --------->AHL20(2)            <---------WOX13(1)     <---------CCA1(2) -HVH21 <---------ANAC58 <---------AHL20(2)        <--------P           <---------TOE2(3)    <-------   agcgtctattgcttttgactttagtttttaaattcaataaaagtgtgaaatgggttgatttattattgaatattgatgttgtatcttcatacttactttt  1526800                                                >>>>>>>>>ARR2                                                >>>>>>>>>ARR1                                                >>>>>>>>>ARR1                                               <------ZmHOX2a(1)                           --------->AHL20(2)                                   <---------ICU4         <------MYB46(1)                 <---------ATHB12                                   --------->YAB1   <---------YAB1                    ------------>CBF                                  <---------YAB1>>>>>>>>>ARR2                  <-----------HVH21                    <---------ANAC46         <---------TOE2(3)                ----------->HVH21                    <---------ANAC58         <---------TOE2(2)              --------->ATERF1(1) ---DOF2            <---------ANAC58    --------->ZAT6    <------MYB83      <---------ANAC58 <------- --DAG2     ------->TEIL        --------->YAB1<---------YAB1            *TSS<---------ANAC58 <-------   agttttagttgatgtatcaatagcttatattgtttgataataacacttaggattgtcatttggttcttaaaaccatgggcctgccaggtccaattaagta  1526900                                                            ---------->DOF2                                                           <---------AHL20(2)                      <---------AHL20(2)                   --------->AHL20(2)       ----------->GT1   --------->ANAC58   --------->AHL20(2)              ------------>CBF            ----------->GT1   --------->ANAC58  --------->AHL20(2)              ----------->RAV1(1)          <---------LBD16 --TOE2(3)        <------ZmHOX2a(1)                 --------->MYB46(3)        <---------ARR14(2) --ANAC55(2)  ---------->DOF2---------->ID1       ----------->RAV1(1)         --------->ARR14(2)   tggacaagcccaaaatgaaaggatttaatttggcccaaaaaccatttgggtccaacaacaattaaaggctagggtttcagtatatggggaaaattttgga  1527000                                     --------->At4g35610                                     --------->GLK1(1)                                         <-----                                 --------->ANAC58                                             -------                                 --------->ANAC58                                           <--------             *TSS        ------>NtERF2                      ------>NtERF2            <----------DOF2   aactccaaaaccaaaatcgtcgctctctgcctctctcgcatctccaaatcgaaatcgctctctgcctctcttcgtctccgtctccatctttgtctccggt  1527100                          --------->TOE2(3)                  <---------GLK1(2)                ------>ZmHOX2a(2)                            --------->ARR11(3)    --------->YAB1     ----------->RAV1(1)                   <---------ARR11(3)   ----------->GT1 ----------->HVH21            <----------DOF2                              <------- ----MYB52(1)  <------ZmHOX2a(2)             --------->ARR11(3)                              -------- -->LBD16      <---------GLK1(1)             <---------ARR11(3)                      --------->TOE2(3) -LBD16        --------->GLK1(1)   <---------YAB1  --------->MYB59                ----------->RAV1(1)   gagtattgataaatccgatctctgacaacattagatttcgattgtaagttctttaggtctgtagattttgagtaatgggtttgacaacattagatttata  1527200        <---------ALFIN1  <---------ALFIN1                         <-----------GT1 --------->ZAT18            <---------GLK1(2)       <-----------GT1 <---------ZAT18      --------->ATHB12  --------->ANAC46 --AHL20(2)          --------->ICU4 --------->HSFB2a(2)                      <---------At5g28300 ->AHL20(2)          <---------YAB1 <---------HSFB2a(2)              <----------DOF2--------->ICU4   ttgcccactcccacttgtttgtgttgattagattgtccctagaagtcactgtttttgctctacttatcgctctttcaattactgtaatgttgaatttggg  1527300                                                             <---------AtLEC2                                                        <-------MYC3                                                  <---------ZAT18                                 ---                                                  --------->ZAT14                                 ---                                                  --------->ZAT18  <----------DOF2                <--                                            --------->YAB1   --------->ANAC55(2)                 <---  <---------At4g35610<---------ATHB12   ----------->GT1 ------->MYC3                    <---------YAB1   tttcatctactaactaagatgaaatcaatttgagaagactagtggataatagtgaacacgtttacatgacttttgacttgatagtttgctattcttgttg  1527400                                                                           <---------AHL20(2)                                                                     <---------At4g35610                                                                    --------->ARR14(2)                                                                    ------->TEIL                                                                    <---------ARR14(2)        <------                       <---------WOX13(1)                          <---------CCA1(2)--------->GLK1(2)                      <---------ANAC58                        <----------DOF2      <---------GLK1(2) ---->TEIL  <---------YAB1                                   <---------ANAC58    <---------TOE2(3) ------>ARR14(2)      <---------ANAC58                       <---------ANAC58    <---------YAB1 -------ARR14(2)      <---------ANAC46                     ------->TEIL    --------->AHL20(2) <------ ------CCA1(2)     <--------P       <-------TEIL        <---------REM1(1) <---------WOX13(1)  -------   tatctgtgtgaattgttataggttgcttgattttgatgttcatgtgtcaaatttgataatgtagcttttgtatctgattaattaagattctaatgcagtt  1527500  Previous    Next  AGI:  At2g04378.1    Description:  beta-galactosidase. similar to beta-galactosidase [Arabidopsis thaliana] (TAIR:AT5G01080.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944) Range:  from: 1525328    to: 1526872    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g04380.1    Description:  unknown protein Range:  from: 1525639    to: 1526764    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g04390.1    Description:  40S ribosomal protein S17 (RPS17A). Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to 40S ribosomal protein S17 (RPS17D) [Arabidopsis thaliana] (TAIR:AT5G04800.3); similar to 40S ribosomal protein S17 (RPS17D) [Arabidopsis thaliana] (TAIR:AT5G04800.2); similar to 40S ribosomal protein S17 (RPS17D) [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to unknown [Populus trichocarpa] (GB:ABK94799.1); contains InterPro domain Ribosomal protein S17e; (InterPro:IPR001210) Range:  from: 1527013    to: 1528490    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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