Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <----------DOF2                                                                                       --------------                                                                               --------->KAN4(2)                                                  ------->GAMYB               <---------KAN4(1)                                                 <---------ANAC46      <---------ARR11(3)                                               --------->MYB52(1)      <---------ARR14(2)                                          <---------ANAC58             --------->ARR14(2)                                          <---------ANAC46             --------->ARR11(3)                  <---------At4g35610     <---------ANAC58     <XXXXXXXXXXXXXXXXXXXXMIR774B*                  --------->At4g35610--------->ZAT2    --------->GLK1(1)      --------->KAN4(1)  ----                  <-------GAMYB      --------->At4g35610--------->ARR11(3)   ------->TEIL        <---              <------ZmHOX2a(1)      <---------At4g35610<---------ARR11(3)<---------YAB1      <------       --------->ATHB12             --------->GLK1(2)  <---------GLK1(1)--------->CCA1(2)     -------   acataggcatcatttaggacagttgagagaaggaacagaagctgtcttgtaacggagaaatctttgaaatggagatatgaatattcttactttgttttgg  1515400     <---------ANAC46   <----------DOF2                                                                         <--------- ->AGL15                                                         --------->YAB1     <---------ANAC46 ----->ARR14(2)                                                <---------WOX13(1)<---------ARR14(2) ------ARR14(2)                                              --------->ATHB12    --------->ARR14(2) ---HSFB2a(2)                           --------->YAB1      <---------YAB1       <---------MYB52(1) -->HSFB2a(2)                 <---------ALFIN1      ---------->DOF2             <-------GAMYB    ----   aactgctttgtgtattcatatgtgtttgactcacacatttcatcaaaatgcttataaagggtttgattgataactcggactcggttatgggtgtaacgtt  1515500                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC58                      <---------ARR14(2)                      ---------->DOF2 <------NtERF2     --------->AHL20(2)     <---------DAG2               ----------->GT1 <-----------RAV1(1)     <---------AHL20(2) --------->MYB46(3)          <---------ANAC46    <---------ANAC46 --GT1     ----------->GT1  <----------DOF2         <---------ANAC58  --------->ARR14(2) ----->AHL20(2)       --------->ARR14(2)            <---------ANAC58  <---------ARR14(2)----------->GT1   ttaatatttaaaatcgcaaaattggaaccgcttttttaaactgagtgaaatatagcgttttgaaaaaagacgtttctggtggcttctgaattgaaaaatc  1515600                                                                      <---------TOE2(3)                                                                      <---------TOE1(3)                                                                     <-----------RAV1(2)                                                                 --------->GLK1(1)                                                                <---------GLK1(2)                                                                --------->ARR14(2)                                                              --------->LBD16                                                             --------->ANAC46           ---------->DOF2                                                             --------->HSFB2a(2)        =============                               --------->ARR14(2)            <---------HSFB2a(2)    --------->ANAC58                               --------->GLK1(2)            <---------LBD16         --------->ANAC58                               <---------ARR11(3)         --------->ARR14(2)  ------->MYC3--------->ANAC58            <-----------GT1    <---------ARR14(2)         <---------ARR14(2)  <-------MYC3--------->ANAC58        <---------DAG2         --------->ARR11(3)      <---------ANAC58      <---------O2--------->DAG2        <----------DOF2       <---------GLK1(2)        <---------ANAC46    <---------DOF5.7(2) ------     <-----------GT1 <---------AHL20(2)                <---------ANAC58   <---------WRKY12<----------ID1   agcgtttttacttttcacaatattcaattggagaatctttagaacttcaacgaagtagcgtctccggaatttcaggtaaacgtggcaagaaaaagccaaa  1515700            ------->MYC4            <-------MYC4            ------->PIF5            ------->MYC3              <-------MYC2            <-------PIF5              <-------PIF5            <-------MYC3              <-------MYC3            <-------MYC2              ------->MYC2                                  --------->ANAC46            ------->MYC2              ------->MYC3                                 <-----------------AGL2           --------->TGA1a            ------->MYC4                                 ----------------->AGL3           --------->O2               <-------MYC4                                 ----------------->AG           --------->ANAC55(2)        ------->PIF5                                 ----------------->AGL1           <---------O2              --------->ANAC55(2)      --------->HSFB2a(1)  <-----------------AGL1           --------->ANAC46          >>>>>>>>>>HY5            <---------HSFB2a(1)  --------------->AGL15           <---------TGA1a           <---------TGA1a     --------->ANAC58          <---------HSFB2a(2)         <------------OsbHLH66       --------->O2     --------->TOE1(2)            --------->HSFB2a(2)         <---------ALFIN1            ================================================bZIP_DOF       <-----------------PIF3(1)     --------->TGA1a  --------->DEAR3(1)       <---------ANAC58    --------->HSFB2a(1)              <---------O2 <---------SPL1(2)            <---------ANAC58     -    --------->HSFC1(2)              <---------TOE1(2)--------->DEAR3(2) --------->MYB46(3) <---------    <---------HSFC1(2)             <---------ALFIN1 --------->SPL7  ------>ZmHOX2a(1)--------->LBD16<    <---------HSFB2a(1)            <------------OsbHLH66 --------->ANAC46 ---------->DOF2--------->DAG2   --------->ANAC58           <---------At4g35610 <---------SPL7   --------->TOE1(3)<---------------AGL15   --------->ANAC58    <---------MYB52(1)        <---------ANAC58  --------->TOE2(3)--------->LBD16 < ====================bZIP_DOF --------->At4g35610<---------ANAC58  <---------ANAC55(2)  ---------->DOF2 --->MYB52(1) <-----------HVH21  <----------------PIF3(2)--------->ANAC58 --------->MYB52(1)<------ZmHOX2a(1)   cggagaagcatccacgtgtccctccattagccatctcccacgtgtccattaccgtaccgacgaaacattccttaaccaaaggcttcccgaaaaaggacag  1515800                                                                                                <----         <---------LBD16                                                                      <------      <---------HSFC1(2)                            <-----------GT1                           <------     --------->ANAC58                             <----------DOF2                    --------->YAB1  *TSS--------->HSFC1(2)                          <---------DAG2         --------->ARR14(2)   ------- -------->ZAT18                          ----------->GT1        <---------HSFB2a(2) --------->ICU4 -ID1--------->ANAC58                   --------->DAG2          --------->HSFB2a(2) <---------ATHB12< ---------ZAT18                       ---------->DOF2 --------->ANAC55(2)<---------ARR14(2)   ------- ---------ZAT14             ---------->DOF2    <-----------GT1 <---------LBD16     xxxxxxxxxxxxxxxx>smallRNA(i)   agtccacaagcttcggattgttcacaacttcaaagcatcgaaaaggtttaaactttacgtttttctctggaacccgattcgaagaaatcatcaagaagtt  1515900         --------->GLK1(1)                                                                    ------>ZmHOX2a(2)         <---------GLK1(1)                                                                  --------- -------GT1                                                        --------->TOE2(3)  <-------GAMYB ---HSFC1(2)                                                     ------>NtERF2       <-----------RAV1(1) ---HSFB2a(1)              <------MYB83                     --------->HSFB2a(2)   --------->GLK1(2) -->HSFC1(2)               <------MYB46(1)                  <---------HSFB2a(2)  <---------ARR14(2) ----------DOF2           <---------TOE1(2)              <-----------GT1         <---------GLK1(2)  < -->HSFB2a(1)             <---------TOE2(2)          <----------DOF2        <----------DOF2 <--------   tcctttcactgatttctcaatctattcgtaggtaacccaattccaaaaaacgtttcttttttctcgatgccttagcttctttggattctgttgtgatcta  1516000                                                                                       --------->GLK1(2)                                                                                      <---------ARR14(2)                                                                                      --------->ARR11(3)                                                                                      <---------GLK1(2)                                                                                      --------->ARR14(2)                                                                                     --------->HSFC1(2)                                                                                     <---------HSFC1(2)                                                                                --------->HSFB2a(2)                     <------ZmHOX2a(2)                                          <---------HSFB2a(2)             <----------DOF2                <---------YAB1          <---------ANAC58 --------->HSFB2a(1)             <---------WOX13(1)           <---------ZAT6   <----------DOF2   <----------DOF2      <--            <---------ANAC58          <---------YAB1  <----------DOF2   <---------ANAC58     <------- >ARR11(3)  <---------ANAC58      --------->At5g28300<---------ANAC58   <---------ANAC58 <---------LBD16 ---------GLK1(2) ------>ZmHOX2a(2)<---------YAB1    <---------ANAC58<----------DOF2 <---------HSFB2a(1) -ARR11(3)  <---------AtLEC2 <------ZmHOX2a(2) <---------YAB1       <---------ANAC58----------->ARR10   ccgattttgaatttgcttgatcgatcatcggatcactgtgattagtgttattgttcctttcctttgtgtagctttcgcgcttatggaagattctggagtg  1516100                                                                              <---------ANAC58                                                                              <---------ANAC58                                                        --------->ALFIN1<---------ANAC58         <---       --------->ARR14(2)     <----------DOF2       <------ZmHOX2a(1)   <---------ANAC58       <-----    <---------ATHB12      ----------->HVH21     --------->TOE1(2)   <----------DOF2           <------ -------ARR14(2)  ---------->DOF2              --------->YAB1      <---------ANAC58         <-------- --ANAC46 <-----------GT1--------->At5g28300   --------->ATHB12    <---------ANAC58  <-----------GT1   aatccaatggattcaccatctaaaggcagtgactttggagtctatggaatcataggaggtggaatcgtggctttacttgtgcctgtgttactctctgtgg  1516200                                                           --------->HSFB2a(1)                                                           ----------->GT1                                                           <---------HSFB2a(1)                                                           <------MYB46(1)                      ---------->DOF2               <---------ANAC46          --------------->AGL15                     <---------ANAC58          <---------------AGL15                     <---------ANAC58         ----------------->AGL1                    <------NtERF2         ----------------->AGL2                  <---------DEAR3(1)                             <----         ----------------->AG                    --------->ALFIN1                     ----------->RAV1(2)         ----------------->AGL3                <------MYB46(1)                     <---------At4g35610  <---------AtLEC2<----------ID1              --------->MYB111(1)       <-----------HVH21       <---- ------ANAC46    ----------->GT1              --------->MYB46(2)        <-----------TGA1      <------ ----ANAC46    --------->DAG2                 --------->MYB111(2)      <---------ANAC58 ------>ZmHOX2a(1) ---AtMYB61   --------->DAG2             ---------->DOF2<------ZmHOX2a(1)          <---------ZAT2   < ---RAV1(1)  ---------->DOF2   --------->ALFIN1<------MYB83<------MYB83<---------ANAC58 --------->LBD16   tgttgaatggaaccaaaaaggggaaaaagagaggtgttcccatcaaagtaggtggcgaggaaggttacacaatgcgtcatgctcgagctcctgaattggt  1516300  Previous    Next  AGI:  At2g04340.1    Description:  similar to unknown [Picea sitchensis] (GB:ABK22743.1) Range:  from: 1513509    to: 1515537    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g04350.1    Description:  long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8). similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41136.1); similar to hypothetical protein OsI_018747 [Oryza sativa (indica cultivar-group)] (GB:EAY97514.1); similar to long chain acyl-CoA synthetase [Brassica napus] (GB:CAC19877.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 1515802    to: 1519305    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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