Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->TGA1a                       --------->ANAC58                       ====================bZIP_DOF                       --------->ANAC58                       <---------O2                          <---------ARR14(2)                       --------->O2                          <---------GLK1(2)                    <--         <---------LBD16        <----------DOF2              --------->ARR14(2)                  ---- ----->NtERF2          <---------TGA1a                    --------->YAB1                        <---- -------->LBD16        --------->ANAC46            --------->At4g35610      --------->ALFIN1   <----- ------->DEAR3(1)   <---------ZAT18                ------>ZmHOX2a(1)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->ANAC46   --------->At4g35610        <-----------HVH21           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --CCA1(2)--------->ANAC46   <---------ARR11(3)--------->ARR14(2)   ------>NtERF2        xxxxxxxxxxxx   tccgcctcttccacgggattagcacacgcgagttctttgtttgtctccgtctcctctgaatcggaatcggagcccaaggtttggctactactccctgatt  1512700                                                                                      <-----------HVH21                                                                                   <---------YAB1                                                                                 <---------KAN4(1)                                                                                 --------->KAN4(1)                                                                                <---------KAN4(2)                                                                                <---------ARR14(2)                                                       <---------ARR14(2)       ---------->TaMYB80                                                       <---------GLK1(2)        --------->ARR14(2)                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <------NtERF2  <<<<<<<<<TBF1                         --------->AtMYB61                    <---------RAP2.6(3) -------YAB1                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->LBD16 ----->KAN4(2)                         --------->bZIP60(2)                  --------->RAP2.6(2) ----- -----KAN4(1)                          --------->ANAC46--------->KAN4(2)   <---------LBD16      <xxxx ----YAB1          <----------DOF2   <---------ALFIN1  --------->ARR14(2) <---------At4g35610   <xxxx xxxxxxxxxx>smallRNA(fl3)       <---------At4g35610   <----------TaMYB80  --------->At4g35610  <-----   attcttcttcacttccttcttctttttcattttcatcttccacctcatcagtttgcatattctcttgagtttcttcagccggaatatgcttcagagcatc  1512800                                                                                    --------->RAP2.3(2)                                                                                    --------->RAP2.6(2)                                             <---------MYB46(3)                    xxxxxxxxxxxxxxxxxx                                            <------NtERF2                          xxxxxxxxxxxxxxxxxx                                           <-----------HVH21                       <------NtERF2                                          --------->DEAR3(1)                       --------->ATERF1(1)                                         <------NtERF2                             --------->RAP2.3(1)                                         --------->RAP2.3(1)                      xxxxxxxxxxxxxxxxxxx                                         --------->ATERF1(1)                <-------GAMYB                                         --------->DEAR3(2)                <---------ANAC46                               --------->LBD16<-------GAMYB              <-----------HVH21 <---------ANAC58                --------->ANAC58        <---------At4g35610           <---------At4g35610  <---------ANAC58                --------->ANAC58  <-------GAMYB                       --------->At4g35610 <---------MYB46(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->RAP2.3(2)   ----------->ARR10 <---------At4g35610 ---->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------MYB52(1) <---------MYB46(3)      -- xxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------MYB46(3)  <------NtERF2   --------->DEAR3(1)  <---------AtMYB61 xxxxxxxxxxxxxxxxsmallRNA(fl3) <-----------HVH21 <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i) ----YAB1  --------->YAB1 <---------GLK1(1)<---------RAP2.6(3)  ---------->DOF2   --------->At4g35610   ataaaacgtagaatcatcaagcatcgggctctccgtcgttggagccgtcgttggagccgttgtcgttagagccgctgtcgttggagccgcattggttgcc  1512900                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                  --------->TOE1(2)                                                  --------->TOE1(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <---------HSFC1(2)         --------->HSFB2a(1)                                                 --------->HSFB2a(1)        --------->HSFC1(2)                                                 --------->HSFC1(2)         <---------HSFC1(2)                                                ------->TEIL            <xxxxxxxxxxxxxxxxsmallRNA(s)                                             ----------->HVH21        ----------->RAV1(2)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)  ------->TEIL             <                                           ----------->RAV1(2)        <------NtERF2                <x                                           <------NtERF2             ------>NtERF2               ----                                          ------>NtERF2              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <---------ATERF1(1)        <---------RAP2.3(1)         <---                                          <---------RAP2.3(1)       <---------DEAR3(1)          <----                                         --------->DEAR3(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ATERF1(1)        -----                                        --------->ATERF1(1)         <xxxxxxxxxxxxxxxxsmallRNA(s)<----                                        <------NtERF2               --------->DEAR3(1)         <xxxxx                                        --------->RRTF1(1)         --------->RAP2.3(1)         <-----                                        --------->RAP2.3(1)        --------->RRTF1(1)          ------                                        --------->ORA47(2)         --------->ATERF1(1)        -------                                        --------->DEAR4(2)         <------NtERF2              -------                                       ------>NtERF2               --------->DEAR4(2)         -------                                       <---------ATERF1(1)         --------->ORA47(2)         <------NtERF2                                       <---------RAP2.6(1)        <---------ATERF1(1)         -------                                       <---------RRTF1(1)         <---------ERF1              -------                                       <---------ORA47(2)         --------->LBD16            <-------                                      <---------ATERF1(2)         <---------DEAR4(2)         <-------                      <------NtERF2   <---------RAP2.3(3)         <---------RRTF1(1)         <-------                     ------>NtERF2    <---------RAP2.3(2)         <---------DEAR3(2)         <-------                     <-----------HVH21--------->ATERF1(2)         ------>NtERF2              --------                    <---------ATERF1(2)<---------DEAR3(2)         <---------RAP2.6(1)        ------>NtERF2                    <---------O2      --------->DEAR3(1)          <---------RAP2.3(1)        <-------                    <---------ANAC58 --------->ATERF1(1)          <---------ORA47(2)         <-------                    --------->ATERF1(2)<---------RAP2.3(1)       --------->DEAR3(1)          <-------          <---------ATHB12       <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------RAP2.3(3)         <-------    <------NtERF2 <---------ZAT18<xxxxxxxxxxxxxxxxsmallRNA(i)    <---------DEAR3(1)         ---------   ------>NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)             <---------RAP2.3(2)        <--------   <---------ATERF1(1)--------->ATERF1(1)<---------DEAR3(1)      <---------ATERF1(2)        <--------   <-----------HVH21--------->bZIP60(1)<---------DEAR4(2)        --------->ATERF1(2)        <--------  --------->DEAR3(1)<---------bZIP60(1)<---------ERF1           --------->ATERF1(1)         <--------  <---------DEAR3(1)<---------ANAC58 <---------LBD16           xxxxxxxxxxxxxxxx>smallRNA(i)<---------LBD16 xxxx>smallRNA(se3) <---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(i)<---------LBD16            --------->ATERF1(1) xxxxx>smallRNA(fl3)--------->DEAR3(1)<---------DEAR3(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------- xxxx>smallRNA(se3) <---------bZIP60(2)--------->LBD16  <----------DOF2 ----------->HVH21 xxxxxxxxxxx ------->DEAR3(1) xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----------DOF2 --   atcgccgtcgcaatcgtttgtgccgtcgcagtcgtcttcgccggcgcctgaaccttcgctttcttcgccggcgcctgaaccttctctttcttcgccggcg  1513000                                                                                   ------>NtERF2                                                                                   --------->ABI4(2)                                                                                  <---------DEAR3(1)                                                                                 --------->RAP2.3(1)                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                --------->LBD16                                                                                <---------RAP2.3(1)                                                                                ------>NtERF2                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <---------ORA47(2)                                                                                <---------ERF1                                                                                <---------ATERF1(1)                                                                                <---------DEAR4(2)                                                                               <---------RAP2.3(2)                                                                               --------->RAP2.3(3)                                                                               --------->RAP2.3(2)                                                                               --------->ATERF1(2)                                                                               <---------DEAR3(1)                                                                               --------->DEAR3(1)                                                                               <---------RAP2.3(3)                                                                               <---------ATERF1(2)                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  ------>NtERF2               <---------LBD16     xxxxxxxxxxxxxxxx>smallRNA(i)                --------->RAP2.3(2)          <------NtERF2    --------->TOE1(3)                            --------->DEAR3(1)           --------->ATERF1(1)    --------->TOE1(2)                           --------->DEAR4(2)            --------->DEAR3(2)   --------->HSFC1(2)                           <------NtERF2                 --------->ORA47(2)   <---------HSFC1(2)                           --------->RRTF1(1)            --------->RAP2.3(1)   --------->HSFB2a(1)                          --------->ATERF1(1)           --------->ERF1  ------->TEIL                                  --------->RAP2.3(1)           --------->RAP2.6(1) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->ORA47(2)            --------->RRTF1(1) xxxxxxxxxxxxxxxsmallRNA(i)                    ------>NtERF2                  --------->DEAR4(2) ------->RAV1(2)                               <---------ORA47(2)            ------>NtERF2 ---NtERF2                                     --------->LBD16               --------->ABI4(2) -----ATERF1(1)                                <---------RAP2.6(1)           <---------RRTF1(1) ->NtERF2                                      <---------ATERF1(1)           <---------ATERF1(1) -----RAP2.3(1)                                <---------DEAR3(2)            <---------RAP2.3(1) xxxxxxxxxxxsmallRNA(s)                        <---------RAP2.3(1)           <---------ERF1 ----DEAR3(1)                                  <---------ERF1                <---------DEAR4(2) --->DEAR3(1)                                  <---------RRTF1(1)            <---------RAP2.6(1) -->RRTF1(1)                                   <---------DEAR4(2)           <---------DEAR3(1) -->ATERF1(1)                                 <---------DEAR3(1)            --------->DEAR3(1) -->ORA47(2)                    ------>ZmHOX2a(1)<---------DEAR3(1)         <---------RAP2.3(2) -->DEAR4(2)            --------->HSFB2a(1)   <---------RAP2.3(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->RAP2.3(1)           <---------HSFC1(2)    --------->DEAR3(1)           --------->ATERF1(1) --DEAR4(2)             <---------HSFB2a(1)   <---------ATERF1(2)          <------NtERF2 --ATERF1(1)           ------>NtERF2          --------->ATERF1(2)          --------->RAP2.3(1) --RRTF1(1)           <---------ALFIN1        --------->RAP2.3(2)         <---------RAP2.6(1) --RAP2.6(1)         --------->ATERF1(1)      <---------RAP2.3(2)         <---------ATERF1(1) ->LBD16             <------NtERF2           --------->RAP2.3(1)          ------>NtERF2 --ORA47(2)         <---------ATERF1(1)      --------->ATERF1(1)          <---------RRTF1(1) --DEAR3(2)         ------>NtERF2            --------->ERF1               <---------RAP2.3(1) --RAP2.3(1)        <---------DEAR3(2)       --------->ORA47(2)           <---------ERF1 --ERF1             --------->LBD16          <---------LBD16              <---------ORA47(2) >ATERF1(2)        <---------ATERF1(2)      <---------ATERF1(1)           <---------DEAR3(2) -RAP2.3(3)        --------->ATERF1(2)      ------>NtERF2                <---------At1g77200 -RAP2.3(2)        --------->RAP2.6(2)      --------->LBD16              <---------DREB2C(2) -ATERF1(2)        <---------DEAR3(1)      --------->DEAR3(1)            <---------RAP2.3(2) -DEAR3(1)         --------->ANAC46        --------->ANAC46<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >DEAR3(1)<----------DOF2<---------DAG2   <---------LBD16 <----------DOF2<---------RAP2.3(3)       <- xxxxx>smallRNA(i) --------->DEAR3(1)<---------DAG2<------NtERF2         <---------DEAR3(1)    <----- --------->HVH21  <---------LBD16    <----------DOF2<----------DOF2    <-----------HVH21<---------CCA1(2)   cctgaaccttcgctttcttcgccggcaccttctccttcactttctccgccggcgccttaactttctctgtcttcgtcggcgccggcgcttctatctcctt  1513100                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <-------MYC3                    <xxxxxxxxxxxxxxxxsmallRNA(i)                    ------->MYC3                   --------->ANAC58                   --------->O2                                  --------->GLK1(1)                   --------->ANAC46    *TSS                   ----------->GT1                   --------->ANAC58   <---------WOX13(1)     --------->ANAC58        <---------WRKY18(1)         <---------WRKY18(1)      --------->ANAC58       --------->WRKY38(1)     ------>NtERF2               --------->MYB52(1)--------->ANAC58       ----------->HVH21      <---------DEAR3(1)--------->ARR14(2)           --------->ANAC58 <------       --------->WRKY12       <---------RAP2.6(2)       <---------------AtSPL3          <---------HSFB2a(1) xxxsmallRNA(si3)<---------ALFIN1  ----------->HVH21    <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->HSFB2a(1) ---------DOF2 ------>ZmHOX2a(1)<------NtERF2   <---------ARR14(2)         ---------->DOF2   -------- -----DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   tcttttcccttgacctcctccacgcgtcttaggcggcatgactgatttcgaatcggaaatagaacggaaatactggtgaaagcaagaagaacgctcgatt  1513200                                      <---------ARR14(2)                                  <---------At4g35610                                  --------->At4g35610                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               xxxxxxxxxxxxxxxx>smallRNA(i)                        <-------GAMYB--------->At5g28300                       <---------MYB46(3)     <------ZmHOX2a(1)   ---------->DOF2     ----------->GT1--------->ARR14(2)  <---------AHL20(2)  <---------TOE2(3)     <---------TOE2(3)                          --------->ANAC58  --------->AHL20(2)<---------ANAC46<---------MYB46(3)                                 --------->ANAC58 ------CBF       <-----------RAV1(1)----------->GT1                             --------->YAB1 ->ATHB12       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)----------->GT1--------->MYB52(1) --------->ANAC46   gaatttaaagaaatagggaatgttgtggttaatttcagcggttactaaggagaagaagtcaaaaaatcgaaaacggttgtaatgagaacaagaaacaatt  1513300                                                                              <------MYB46(1)                                                                              <---------MYB46(3)                                                                              <------MYB83                                                                             <---------AtMYB61                                                                         <------MYB83                                                                         <------MYB46(1)                                                                         --------->MYB55(2)                                                                         <---------MYB46(3)                                                                        --------->ALFIN1                                                                        <---------AtMYB61                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    <---------ANAC46                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                <---------MYB46(3)      <---------MYB52(2)                         <---------TOE2(3)                     --------->ALFIN1      <---------ARR14(2)              --------->LBD16                               --------->DAG2   --------->MYB59             <---------LBD16                               ---------->DOF2 <---------ANAC46      <---             --------->LBD16                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-----         <---------ARR14(2)                        ---------->DOF2<---------ARR14(2) --------->ARR14(2)        --------->HSFB2a(1)            <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------        <---------HSFB2a(1)        <---------AHL20(2)  ----------->GT1 <---------MYB52(1)    --------    ----------->GT1      <---------TOE1(3)        --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ----------->GT1 --------->ICU4 <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------->TEIL   tcgaattggaaaatccctggaaatattaaggttttttttatttgattttcaaataaagagtaaaagtggttcgggtggtttggttcggaaacgaaccatg  1513400                                                                                 <-----------GT1                                                                              --------->ATHB51                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)                                                                             <---------AHL20(2)                                                                             --------->AHL20(2)                                                                          --------->AHL20(1)                                                                          --------->AHL20(2)                              --------->CCA1(2)                           <---------AHL20(2)                              --------->GLK1(1)                           <---------AHL20(1)      <---------MYB52(1)      <---------GLK1(1)                          <---------AHL20(2)      ----     ----------->GT1         --------->ARR11(3)                          --------->AHL20(2)      <---    --------->HSFB2a(2)     <------ZmHOX2a(1)                         --------->AHL20(2)        <----    <---------HSFB2a(2)   <---------TOE1(3)                          --------->AHL20(2)         ----- ------ARR11(3)    <-------TEIL           <-----------GT1            <---------AHL20(2)    <--------- ----YAB1  <---------AHL20(2)--------->ARR14(2)                  --------->AHL20(2)   <---------MYB52(1) --->ICU4  --------->AHL20(2)<---------ARR14(2)              ----------->GT1 <---------AHL20(1) <---- ->YAB1   --------->ICU4  <---------TOE2(3)                  <---------TOE2(3)<---------ICU4---------   atttttctggtaattaataggttcggataaggatatactagtaatatccatctatttcgaattaagaaaaaataaataaattatttctgttttttacaat  1513500       <---------ANAC58 ----->YAB1 -----ATHB1                                                      <------ZmHOX2a(2) -----ATHB12          --------->DAG2                            --------->ARR11(3) ---->ICU4           ---------->DOF2                        --------->REM1(2) --GT1 <---------ANAC58  <------ZmHOX2a(1)       <---------HSFB2a(2) -----YAB1  ------>ZmHOX2a(1)             <-----------------AGL1<---------ARR11(3)    <---------REM1(2) --->CBF *TSS <----------DOF2            <-----------GT1   --------->ALFIN1   <----------DOF2<-------   gattttttggcttcctctttgcaaaaaggactgccagacgatttttcgattttggaagaccgtggagatcaaaacagtctcttttgtctactcagtcccc  1513600  Previous    Next  AGI:  At2g04330.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); similar to unnamed protein product [Asper (GB:BAE61223.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 1510447    to: 1513139    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g04340.1    Description:  similar to unknown [Picea sitchensis] (GB:ABK22743.1) Range:  from: 1513509    to: 1515537    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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