Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <----------DOF2             ------>ZmHOX2a(2)           <---------ARR11(3)           <---------AGP1           <---------ARR14(2)           --------->ARR14(2)                     --------->ARR11(3)           --------->ARR11(3)                     <---------GLK1(2)          <---------CCA1(2)                       <---------ARR11(3)         <------MYB46(1)                         --------->YAB1         <------MYB83                         ---------->DOF2                        ----------->GT1       <--------P                            --------->TOE1(2)                      <---------TOE2(3)      <-------GAMYB                     <---------MYB52(2)                    --------->AHL20(2)    <---------TOE1(3)  <---------At4g35610  --------->MYB46(3)                <---------AHL20(2)    <---------TOE2(3)  --------->At4g35610 ------->TEIL<-----------GT1       --------->AHL20(2)   agagttagggttggatctttataacagctaagaaaaacataaacgaaccaaagatacttacaatttctgttccattgaaattaatagaggtaacaattcg  1448700                                                                   --------->YAB1                                                                   --------->ATHB12                            <------ZmHOX2a(1)                      <------------ATHB5                          --------->ANAC46                         <--------ATHB1                          --------->ANAC58        --------->LBD16 <---------ATHB51               <---------AHL20(2)               <---------LBD16   <---------ATHB12             <---------RVE1(1)             --------->ANAC58       --------->ICU4            <---------GLK1(2)    <---------At4g35610         --------->ANAC58            --------->ARR11(3)   --------->At4g35610  ---------->DOF2                              --      <----------DOF2     --------->ANAC58 --------->ANAC58  --------->ANAC58 <----------DOF2      <-   ctaagaaactttcagattttttttgcataaggaacagctccaaacaagaacccggctaaagctaagcaatgatggaatcactttgggcaaaattcagggt  1448800                                                                        --------->HSFB2a(2)                                                                        <---------HSFB2a(2)                                         --------->ARR11(3)   ================HOX2a_HOX2a                                         <---------ARR11(3)   <------ZmHOX2a(1)             --------->MYB52(1)      ---------->DOF2        <---------ANAC46--------->ANAC58            ----------->HVH21     >>>>>>>>>TBF1          --------->ALFIN1   --------->ANAC58 --------->GT1             <---------AtLEC2        --------->YAB1      ------>ZmHOX2a(2)     <------- --------ANAC46        --------->At4g35610        <---------YAB1  <---------WOX13(1)     ------->TEIL   tttgtgaataatgggtaacagagtaatctgcatgaagaagaaagatgttgttatcagaagtggaggagattgatccagaagcaagagaatgaatcgttca  1448900                                                                      --------->ALFIN1                                                                    <---------At4g35610                                         <----------DOF2            --------->O2                                         =====================================bZIP_DOF     ------>ZmHOX2a(2)                                      --------->ARR11(3)            <---------TGA1a        <-------TEIL               <-------GAMYB          <---------ARR11(3)            --------->At4g35610   <------ZmHOX2a(2)         <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 ------->TEIL         <---------ANAC58--------->GLK1(2)                          --------->TGA1a      --------->ARR14(2)        --------->ATHB12 <---------ARR14(2)                         <---------O2         <---------ARR14(2)  <------ZmHOX2a(1)      --------->ARR14(2)                       <-----------RAV1(2) <---------WOX13(1) ----HVH21<---------WOX13(1)  <---------AtLEC2           --------->YAB1          --------->CCA1(2)   cagaggaagttgattgctgttgaagagaatttgcatcgaagagctttgtctatggctattcatcaagctcaggtgtctcagagatttgatggatccatgt  1449000                                                                                   ------->TEIL                                                                                   <-----------ARR10                                    <------ZmHOX2a(1)                              <---------ARR11(1)                     ======================HOX2a_HOX2a                             --------->GLK1(2)                     ------>ZmHOX2a(2)                                            <---------ARR14(1)                    --------->At4g35610   --------->DAG2                      --------->GLK1(2)                   --------->ARR11(3) --------->ANAC58                     <---------TOE2(3)                   <---------ARR11(3) --------->ANAC58                 <-------GAMYB              <-------TEIL         <----------ID1                     <---------MYB46(3)         *TSS          <-------TEIL        ---------->DOF2 --------->ZAT14         ----------->GT1           -----     ----------->RAV1(1)   >>>>>>>>>TBF1 ---------->DOF2            <---------MYB52(1)         ------   ctactagcgacatacatacatgatctgaagaagaaagaggacgaaaagtgaagtcgaaatgaacgagaccgatggttaagaatcgaatctaatcccaaca  1449100                                  <---------AHL20(2)                                --------------->AGL15     <---------DAG2     --------->YAB1        --------->ANAC58        <----------DOF2<---------AHL20(2)       ------------>CBF        --------->ANAC58        <---------------AGL15    <---------------AGL15        --------->AtLEC2       <-----------------AGL3   ----------------->AGL3            --------->DAG2       <-------MYC3            <-----------------AGL2 ---------->ID1   <---------------------WRI1       ------->MYC3         <----------DOF2<----------DOF2<----------DOF2   <---------ATHB12   <----- ------>RAV1(1)    ---------->DOF2--------->AHL20(2)  ------>NtERF2---------->DOF2       ---------->DOF2 --->MYB46(3)  <----------ID1  ==========================================MADS_MADS  ----------->GT1   acacattcacatgcaaaacgaaaaagaagtctttctttaaatgggcttttttattcggccctttataagtaaggcccaatcgtacaaagaaaaaagtatt  1449200                                                                                             --------                                                                                            <--------                                                                                          --------->WOX13(1)                                                <---------MYB59                     <---------ICU4                                            --------->MYB59                        <---------ATHB12        --------->TOE2(3)       --------->WOX13(1)                              <---------AHL20(2)      --------->ICU4           --------->AHL20(2)                              --------->AHL20(2)   --------->AHL20(2)          <---------AHL20(2)      <---------YAB1   -------->P ------------>CBF-- ----YAB1          ----------->GT1        <---------MYB52(1)           <-----------GT1  ------------>CBF   atagaataaatattaatcgaccggttaatctaattaatcaaatggttaggcctaactatgtttgaaatttcatttacccgatttaatcaattcaatcaaa  1449300                                                                    -------->HAHB4                                                                    <--------ATHB1                                                                    <---------ICU4                                                                   <---------ATHB51                                                                   --------->ICU4                                                                 --------->YAB1                                                           <---------ALFIN1                       ---                                                          --------->LBD16                        <---                                                         --------->LBD16                         <---                                --------->AHL20(2)       --------->ANAC46                        ---- ->YAB1                <---------ZAT6                <---------ARR14(2)            --------->TOE2(3) -ATHB12           <---------ZAT14                  <---------GLK1(1)              --------->TOE1(3) ------->YAB1      --------->ZAT14   --------->TOE2(3)  <---------LBD16------------>CBF          ----   atcaaaatgttcttccttctcagtactgttcaaattaaaacttaaaatgtctgcatttcccgcacattaataattcaatttcaaaccctaaaaattcgaa  1449400                               ================================HOX2a_HOX2a                               ------>ZmHOX2a(2)                              --------->ARR14(1)                              <------ZmHOX2a(2)                              --------->CCA1(2)                              =================================HOX2a_HOX2a                             --------->ARR11(3)                             <---------ARR11(3)                             --------->ARR11(1)   <------NtERF2             <------NtERF2   <---------ARR14(2)  --------->LBD16             <---------At4g35610                --------->LBD16             --------->At4g35610                --------->RAP2.6(2)                       --------->ATERF1(1)    ------------>CBF         --------->ARR14(2) --------->RAP2.3(2)                       <---------At4g35610   --------->ANAC46         <---------HSFB2a(1)<---------LBD16                         --------->ATERF1(1) <-----------------AGL1     <---------GLK1(1)  <-----------------AG                ------->GAMYB ------>KAN4(2)            ----------->ARR10  --------->ABI4(1)      --------->GLK1(2) <------NtERF2 ------HSFC1(2)     --------->ANAC58          ------>NtERF2--------->DEAR3(2)     --------->MYB46(3) ------HSFB2a(1)    --------->ANAC58         --------->DEAR3(1)    <------ZmHOX2a(1)<---------LBD16 ----->HSFB2a(1)   --------->DAG2         <---------ALFIN1 --------->MYB46(3)     <---------DEAR3(1) ----->HSFC1(2)   ---------->DOF2--------->At4g35610    <------ZmHOX2a(1)       --------->MYB52(1)   aattcccccaatggcatcggaaaagccagaagatccgatgaacaacaccgccggaataggaacagacgaggaatctatagcgcaacggcggaagcggcta  1449500                                                                                --------->AtMYB61                                                                        <------NtERF2                                                                       --------->ORA47(1)                                                                       ------>NtERF2                                                                       --------->ABI4(1)                                                                      --------->RAP2.6(2)                                                                      --------->RAP2.3(3)                                                                      --------->RAP2.3(2)                                                                      --------->DEAR3(1)                                                                     <------NtERF2         <---------ARR14(2)                                                                     --------->DEAR4(2)    --------->ARR14(2)                                                                     --------->ERF1     --------->ANAC58                   --------->LBD16                                   --------->RAP2.3(1)--------->ANAC58                   ----------->GT1                                   --------->ORA47(2)<------NtERF2                  <---------LBD16                                    --------->ATERF1(1)--------->ANAC46                --------->MYB52(1)                                  <---------ATERF1(1)--------->LBD16               <---------SPL7                                       <---------RAP2.3(1)------>NtERF2               --------->ORA47(1)                                   <---------DEAR4(2)--------->RAP2.3(2)               ------>NtERF2                                        ------>NtERF2   ------>NtERF2              --------->DEAR3(1)                                   <---------DEAR3(1) --------->RAP2.6(2)              ----------->HVH21                                    --------->DEAR3(1) --------->DEAR3(1)             --------->ORA47(2)                                    --------->ANAC46 <---------ATERF1(1)       --------->At4g35610                                    <---------ANAC55(2)   --------->LBD16       <---------At4g35610      <---------ANAC58    --------->SPL7 --------->ANAC58<---------ALFIN1       <---------ZAT2           <---------ANAC58 --------->LBD16   --------->ANAC58--------->DEAR3(1)     <---------ZAT18      <-----------GT1       ------->GAMYB<-----------------------TaNAC69(2)     --------->ZAT18--------->LBD16            <---------LBD16--------->ANAC55(2)  --------->ANAC46--   agacgagtgagcttcgccgaccgggaaattacttccgttcacattttcaaccgggacgaagattacgagacgccgcccaatacctccgccgcgaaacccc  1449600  Previous    Next  AGI:  At2g04230.1    Description:  F-box family protein. Identical to F-box/FBD/LRR-repeat protein At2g04230 [Arabidopsis Thaliana] (GB:Q6NKX3;GB:Q9SI10); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G49030.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 1446861    to: 1449097    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g04235.1    Description:  similar to hypothetical protein [Trifolium pratense] (GB:BAE71230.1) Range:  from: 1449411    to: 1455234    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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