Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->ANAC46         <---------ETT(2)     ------>ZmHOX2a(2)     <-------TEIL --------->MYB52(1)                                                        <--------    <------ZmHOX2a(2)                                                                <---------ARR14(2)   --------->ARR11(3)                           --------->ARR11(3)                   --------->ARR14(2)   --------->ARR14(2)                           <---------ARR11(3)                   ------------>MYB.PH3(1)   <---------ARR11(3)                           <---------AHL20(1)           <------ZmHOX2a(2)   <---------ARR14(2)------->GAMYB      <---------ANAC46                    <---------ARR14(2)   --------->AGP1<----------ID1         <---------ANAC58                    --------->ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------GLK1(2)                    <-----------GT1   <---------MYB52(1) -----DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ANAC58 ------->TEIL  <-----------GT1    --------->DOF5.7(2)   tccaagatccgtccacaaaacaacgaaaaccagaatagattatcgtgtgatatattctgaacccaaatttgtttttccgatcccatggaaccgttatctt  1294100                                                                      <------ZmHOX2a(2)                                                                     --------->ARR11(3)                                                                     <---------ARR11(3)                                                                --------->MYB52(1)                                                      <---------YAB1 --------->ARR14(2)                               --------------->AtSPL8--------->AHL20(1)                           <--                             --------->ATHB12        --------->AHL20(2) <----------DOF2           <--                      xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        ----------->HVH21                <----                 --------->At4g35610                 <---------AHL20(1)------>ZmHOX2a(2)      <------                 <---------At4g35610    <----------DOF2    <---------ANAC55(2)             <---------AHL20(1)      --------->At4g35610    <---------ICU4         --------->YAB1   ------->TEIL          --------->ARR11(3)      <---------At4g35610   --------->ICU4    --------->At4g35610    <---------ARR14(2)    --------->AHL20(1) -ARR11(3)<---------YAB1    <---------YAB1    <---------At4g35610   <---------ARR14(1)     <---------ARR11(3)   cggtattgagctctaattgagcttactgccatgattgtgcctcttttctgctaaatataatacgtctaacggatctttatccacattttcaaatattttt  1294200                                                                                    ----------->GT1                                                                            =========================                                                                           --------->ARR14(2)        <----------DOF2                                                    <---------ARR11(3)       <---------ANAC58                                                    <---------ARR14(2)       <---------ANAC58                                                    --------->ARR11(3)   <---------ANAC58                                                      ----------->ARR10   <---------ANAC58                                             <---------YAB1     <-------TEIL <----  --------->MYB52(2)        <---------YAB1                   <---------ARR11(3)  <---------ARR14(2) -------ANAC58          <---------GLK1(2)                    --------->ARR11(3)  --------->ARR14(2) -------ANAC58    <-----------GT1                          <---------TOE2(3)<------ZmHOX2a(2)   ----- -------GT1    --------->ARR14(2)                    <----------DOF2  <XXXXXXXXXXXXXXXXXXXXMIR865-5P- ---AHL20(2)--------------->AGL15              ------->TEIL<---------TOE1(3)--------->CCA1(2)   -----   tcgttccttgctttccatatataccagattatccttggaaatgaagatgaatcaacttttgaaggtattcttgagaagatccaaattcgtaaaaatagaa  1294300                           --------->GLK1(2)                          <---------GLK1(2)                 ----------->HVH21                 <---------ARR14(2)                      --------->LBD16              ------>ZmHOX2a(1)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->HSFB2a(2)                      <---------LBD16    <------ZmHOX2a(1)--------->TOE1(2)       <---------ARR11(1)                              -------- ==========HOX2a_HOX2a   <------ZmHOX2a(1)   <---------ARR14(2)                ----------->GT1 -----ARR14(2)--------->LBD16                --------->ARR14(2)               <---------AtMYB61 ----- ---->GLK1(2)<---------LBD16<---------HSFB2a(1)  <-----------HVH21      --------->DAG2      --------- -------->LBD16  --------->ARR14(2)          <---------ARR11(3)        --------->DAG2       --------- ---->ARR14(2)<---------HSFB2a(2)           <---------CCA1(2)         ---------->DOF2      <---------LBD16   tccgtaggaaaaattcctggaaccgtaggaatctttgagagagcccatatctgtctcgccggatgacattggaaaagggtatggtttattgtctccgtaa  1294400       ----------->RAV1(2)       <---------At4g35610       --------->At4g35610       <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->O2                                                     --------->GLK1(2)     <---------ALFIN1                                             --------->ANAC58   ================RAV  <-----------GT1                           --------->ANAC58   ----------->RAV1(1)  --------->YAB1                           --------->ZAT18   <---------ALFIN1    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <-------TEIL ->LBD16             <---------CCA1(2)                       <---------------AtSPL8              ---- ----->DOF2        ------>ZmHOX2a(1)                        <-----------RAV1(2)                  xxxx >ANAC46 ----------->HVH21       <-----------GT1         ----------->HVH21             ------>ZmHOX2a(2) >ANAC55(2) <xxxxxxxxxxxxxxxxsmallRNA(s)                <-----------HVH21----------->HVH21       ----   tagcgccacatctgacacatcctgtatcacaatttatacctcttcttcgtaaattctctgtgacaggtacacaatctgacaatgtttgatccatttccca  1294500                                                                                        <---------TOE1(3)                                                                                        <---------TOE2(3)                                                                                        --------->DAG2                                                                                     ------>ZmHOX2a(1)                                                                                    --------->TOE1(3)                                                                                    --------->TOE2(3)                         --------->YAB1                                             <---------------AGL15                     <---------AHL20(2)                                             --------------->AGL15                     <---------YAB1--------->ANAC58                                ==================                    --------->AHL20(1)                                        --------->ARR14(2)                    <---------AHL20(1)                                        <---------ARR14(2)                    --------->AHL20(2)                                        <---------ARR11(3)                  ------->TEIL --------->YAB1                                 <---------GLK1(2)   ---            --------->ARR14(2)*TSS --------->ANAC58                           --------->ARR11(3) ----            <---------ARR11(3)<---------ATHB51                            --------->At4g35610    ---- ----->ANAC58  <---------YAB1 <---------ATHB12                            <---------At4g35610    <--- xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ICU4                     <---------YAB1----------------->AG ----->ANAC58--------->CCA1(2)--------->ICU4                --------->WRKY38(1)    ----------------->AGL1   agccttatagtcgagatatgaatataatcgcaataataagcactatttggactgaaaccatgttgactgctatgttagcagattttccttaaggtgaaag  1294600                                                         <---------TOE2(3)                                                       ---------->DOF2          ---------->DOF2      --------->CCA1(2)   <---------------AGL15   ------->TEIL              <<<<<<<<<RAP2.2       --------------->AGL15                       ------ ==================================================================MADS_MADS               --------->ARR11(3) ------>CCA1(2)             ----------->ARR10     <---------ANAC58                        <---------bZIP60(1) ----->ARR11(1)       <---------TOE2(3)           <---------ANAC58                        --------->bZIP60(1) ----->ARR11(3)     ---------->DOF2               <---------ANAC46     <---------YAB1   --------->YAB1 ------ARR11(3)  <-----------TBP   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1 <---------YAB1   atatgaatttagaaaagttttataaaggtttagatatgtatgaaaacatttggcttataaaggtaatctatttttgataaccaagtcttatgatatcatg  1294700          <---------YAB1       --------->AHL20(2)                                                 --------->YAB1     <----------DOF2             <---------MYB46(3)                --------->AHL20(2)    <---------DAG2         <---------ANAC46                 --------->ANAC58                 <------ZmHOX2a(1) <-----------GT1       --------->ZAT14                      --------->ANAC58    --------->TOE2(3)   - --->AtLEC2            <---------ZAT14                    <--------P   --------->YAB1        --------   cattcaccttttattaatacggtagtatagtgtgtttgttcatgtgttctaatgcaaggggtaagccaaatatttataaaaacatcaaaatgttaggata  1294800                                   <---------AHL20(2)                                   <---------AHL20(1)                                   --------->AHL20(1)                                   --------->ARR11(3)                                --------->AHL20(2)                                --------->YAB1                                <---------AHL20(2)                              <---------AHL20(2)                              --------->AHL20(2)                             --------->YAB1                            <---------YAB1                           <---------AHL20(2)                           --------->AHL20(2)                           --------->AHL20(1)                           <---------AHL20(1)             ------->GAMYB                          --------->AHL20(2)             --------->MYB46(3)                  ----------->GT1<---------TOE2(3)     <-----------GT1           ----------->GT1<---------AHL20(2)      ---------->DOF2                 <---------ATHB12 ---------->GT1   <---------ANAC55(2)          --------->TOE2(3)      --------->YAB1             <--- ->YAB1 --------->GLK1(2) --------->YAB1    --------->GLK1(1)     <---------AHL20(2)  <---------DAG2   accagttaaaattctgtaatatgtaaaattatattaatattttgagaattcttaaagtaaccacatatttaagtataatgccaaatcaatttttgtattt  1294900                                                                                <---------ATHB12                                                                              --------->WOX13(1)                                        ------->TEIL                      <---------ICU4                                     <---------YAB1                      <---------ATHB51                 --------->AHL20(2)--------->CCA1(2)                     --------->ICU4            --            ----------->GT1       --------->AHL20(1)                     --------->AHL20(2)      <---            <----------ID1       --------->AHL20(2)                      <---------AHL20(2)      ----        ---------->DOF2   --------->TOE1(3)                 --------->ANAC58 --------->AHL20(2)  <--- ------------------WRI1   --------->TOE2(3)                 --------->ANAC58 <---------AHL20(2)  ----   tcaaaatatacaaagagaaaaaaataaacctcaaaatatatgaatgtctaactaaattcaacaagaaaatgagaaataattaatcaattgtttttctaaa  1295000  Previous    Next  AGI:  At2g04035.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to (GB:AC005508) Range:  from: 1293573    to: 1294530    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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