Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------ALFIN1                        <---------ANAC46             <---------ZAT14                        <---------ANAC58             <---------ZAT18                        <---------ANAC58             --------->ZAT18                    <---------GLK1(1)                --------->ZAT14                              ---                   <---------ANAC58               <---------ANAC58                 ------>ZmHOX2a(1)                   <---------ANAC58             <---------YAB1 --------->MYB46(3)  --------->At4g35610             <---------TOE2(3)  ------>ZmHOX2a(1) <---------ANAC58              ------>ZmHOX2a(1)<---   ctattgcctcaagttgatgttgagttccttgttcctcttctaataagacgatgagtgcaccatcatccactctcatttcatcctcctctgaattcaactc  1270800                                                                                          --------->AtMYB61                                                                                          ------->GAMYB                                                                                         --------->MYB46(3)                                                                                        --------->ANAC58                                                                                    --------->ANAC46                                                                                  ------>ZmHOX2a(1)                                                                              ------>ZmHOX2a(2)                                                                             --------->GLK1(1)                                                                             <---------GLK1(1)                                                                             <------ZmHOX2a(2)                                                                            --------->ARR11(3)                                                                    <-------GAMYB--------->ANAC46                                                                   <---------DEAR3(2)   --------->ANAC58                                                                   <---------MYB46(3) --------->MYB46(3)                             --------->ZAT6                       <---------DEAR3(1)<---------ALFIN1                 <---------ARR14(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->ARR14(2)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ------->GAMYB-------->P                     <---------ZAT2   <---------ARR11(3)            --------->MYB52(1)                          <---------LBD16     --------->ARR14(2)            ----------->RAV1(1)           <---------ANAC58------>NtERF2     <---------ARR14(2) ------>LBD16------>MYB83   ------>MYB83  <---------ANAC58--------->LBD16   --------->ARR14(3)     <- ------ANAC46------>MYB46(1)------>MYB46(1) <---------LBD16--------->ZAT2  <---------GLK1(1)       --   cgtatagttcttaccaacagaactgttaccaactctagacaattgctcgggcaattgctccggctcgggcggtttagagatctcctccacaaccaaaaca  1270900                                                                                              -------                                                                                             <-------                                                                                          -----------                                                                                          <----------                 --------->LBD16              <---------ICU4                              <----------                <---------ANAC58          ------>ZmHOX2a(1)                          --------->LBD16                <---------ANAC46         --------->TOE2(3)                          ------->GAMYB    ----------->GT1      <---------ANAC55(2)  --------->YAB1                    --------->MYB46(3) --------ZAT14  <---------ANAC58---------->DOF2           <-------TEIL          <---------MYB55(2) ------->ZAT14 <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------>ZmHOX2a(1)   <---------ANAC46   cttctctggttattttttgcggatgttacataaacaaagacatcctcatcatcacaaacgttcatttcttcctctactccgaacaaccgtggattgtacc  1271000                                          <---------YAB1                                       <---------MYB52(1)                                    <-------TEIL --------->ARR14(2) >TEIL       <---------MYB59     <---------ZAT2 <---------CCA1(2)                             <------ ----GT1  <-----------GT1<---------AHL20(2) <-----------GT1                                   ------- ---->AtSPL8 --------->TOE1(3)   --------->ZAT2 ------>ZmHOX2a(1)                       <XXXXXXXXXXXX -----AtSPL3 --------->TOE2(3)   --------->HSFC1(2)                                   --------->ARR11(3) -----AtSPL8 <---------DAG2      <---------HSFC1(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   tcatatgcaattttaccttatttgcatttaatccaagcttcgttattatcctatcttctaacattgagagagtaatcttctcccctaatgtcttcatcat  1271100                                                                 ------------>CBF                                                           ------>MYB83                       <---------AHL20(2)               --------->At4g35610                    <-----       --------->TOE1(2)         --------->YAB1         <---------At4g35610            --------->YAB1       --------->TOE2(2)     --------->AHL20(1)         ----------->RAV1(2)           <---------ICU4 ---ICU4  ----------->HVH21 --------->AHL20(2)        <-----------GT1                --------->ICU4 - -->YAB1--------->ANAC46--------->AHL20(2)            *TSS ------>MYB46(1)        ------------>CBF  < XXXXXXXXMIR418       --------->AHL20(2)     <----------DOF2  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <--   cacattatacatgcgaccttggaatttaaaatatatgatcacgttctctttcattgtaacctgccaaaacaatacacatactcagtcaatattactagta  1271200       <---------HSFB2a(2)       <---------------AtSPL8       --------->HSFB2a(2)       --------------->AtSPL8    --------->GLK1(2)                                                                              xx   <---------GLK1(2)                                                                    xxxxxxxxxxxxx <---------------AGL15                                                                <---------ANAC58 --------------->AGL15                                                                --------->ANAC55(2) ----ZAT6                                            --------->ALFIN1                 <---------ANAC58 ---------------->AGL1           --------->ICU4     <-------MYC3      <---------ANAC55(2)          -- -----------------AGL2  --------->ZAT6              ------->MYC3<---------YAB1        <---------ANAC55(2) ---------GT1         --------->YAB1        <---------ICU4    --------->ZAT6          <---------ANAC55(1)   ttaccgattctagtacattttcagtaatactagtactaattctgaaatattacatgtgtgagtaatactattacatatatgaaataatacgtgtctaagt  1271300                                            <---------YAB1                                    <---------ANAC55(2)                                    --------->ANAC55(2)                                    --------------->AtSPL3                     --------->ANAC58            <---------AHL20(2)      --------------->AtSPL8               <---------HSFB2a(2)            --------->AHL20(2)    <-----------GT1                        --------->HSFB2a(2)           --------->YAB1         --------->MYB52(1)                  <-----------GT1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------YAB1  <-----------RAV1(1)         --------->AHL20(2)                   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------At5g28300           <---------YAB1--------->ANAC58 xxxxxxxxxx>smallRNA(i2)     <---------AHL20(2)                 <xxxxxxxxxxxxxxxxsmallRNA(i) ------->ICU4                --------->AHL20(2)        xxxxxxxxxxxxxxxxx>smallRNA(se3)   aatactggtgctattaaaacatactatctatataaattacggtactactatagctagttcgaccagtattattttcgcgacaagaacaaatattcgattt  1271400                                                                                                  <xx                                                         <---------ATHB12                     -------                       ------->MYC3             --------->MYB46(3)                           <xxxxxxx                       <-------MYC3 <---------ANAC58   ------>MYB83                        <------MYB83                      ----------->GT1  -------->P------->GAMYB --------->TOE2(3)           <------MYB46(1)                 --------->YAB1     <---------ANAC58   ------>MYB46(1)                 <---------REM1(1)          <---------ZAT6     <---------ATHB12 --------->MYB52(1)                      <---------TOE2(3)   gagttcaatttagtgtgaatcagcatgtgaaatcaattgcttacccattaacagaccaaatgaagcctaaatctatacttaaacttctaatgtaggtgct  1271500                                                   <---------AHL20(2)                                                 <---------ANAC55(2)                                                 --------->ANAC55(2)                             ------->TEIL------>ZmHOX2a(1)            --------->ARR11(3)                            <---------GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxx                 <---------YAB1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       xxxxxxxxxxxxxxxxxx              <-----------ARR10         --------->TOE2(3)             <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ARR14(2)              <---------At4g35610        <---- ---->GT1    <---------CCA1(2)       <---------ARR14(2)       <----------DOF2      xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ARR11(3)  ---------->DOF2         ----------->RAV1(2)<   aaaacacaataacccaaatctaattggattgaatctcaaaatcctcaaaatatgtaattcaaagcttttgaagctctctccatacctggacttagtagat  1271600                ----------->GT1            <------ZmHOX2a(1)         <-----------RAV1(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------At4g35610                  <------NtERF2    --------->ZAT2                      --------->LBD16    --------->At4g35610                --------->DEAR3(1)                                     <------    <---------ZAT2                  <---------DEAR3(1)                                <----------DOF2   ------->TEIL<------ZmHOX2a(1)<---------RAP2.3(1)                                 ---------->ID1 xxxxxxxx>smallRNA(fl3)        <---------RAP2.3(2)                             <--------------------- xxxxx>smallRNA(s2)        ---------->DOF2  <------ZmHOX2a(1)                 ---------->ID1<-------- -----WOX13(1)----------->GT1  <---------RAP2.6(2)                        <----------DOF2   <-------- xxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxx>smallRNA(s)           --------->ZAT2<----------DOF2 ---------REM1(1)      <----------ID1 <---------LBD16     >>>>>>>>>TBF1   <---------DAG2  <----------   tgatgcagcttgcaggaggagaaaaacgacaatgcggctcgccggaggaagaagcccgaagaagaacgagctcgagctttttctttttctttttccgttt  1271700  Previous    Next  AGI:  At2g04010.1    Description:  transposable element gene. Mutator-like transposase family, has a 3.3e-76 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 1269096    to: 1271154    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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