Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-          --------->YAB1                                                                           --          <---------ICU4                                                                           --   --------->MYB46(3)      ------>ZmHOX2a(1)<---------ATHB12                                       -- ---------HVH21            ===================HOX2a_HOX2a                                   --------- ->AHL20(2)          <---------DAG2    <------ZmHOX2a(2)      --------->ZAT6    <-----------GT1    <-   tgtcaaacaccatcatcacaaaacctttcctccaattacagatcaaatcaaacaagtcttagcaactctacgattttggttttaacttgtgatgttgtca  1264700 --------->TOE1(2) --------ARR14(2) ------->ARR11(3) ------->ARR14(2) ------->GLK1(2)                    <---------DAG2                --------->AtLEC2               <--- -->GT1      ----------->GT1        <----------DOF2 --------->ANAC58                            <---- --------ARR11(3)      ----------->RAV1(2)          --------->ANAC58     --------->MYB52(1)     -----   aaatctgggattatttggaaaaatcgtctggccagtcccttttttacaaagagtaagccaaaaaatccatgtaaaaaacagaaacaatttttgatttttt  1264800                                                                                        --------->ANAC46                                                                                      ------>MYB83                                                                                     --------->MYB52(1)                                                                                    <---------ALFIN1                                                                                    --------->AtMYB61                                                                                   <---------MYB55(2)                                       ------->TEIL                                --------->MYB46(3)                                  --------->At4g35610                            ------>MYB83                                  ----------->RAV1(2)                            --------->ANAC46                                  <---------At4g35610                          --------->AtMYB61                                <---------ALFIN1    --------->HSFB2a(2)       --------->MYB46(3)            ----------->GT1--------->ARR14(2)       <---------HSFB2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->CCA1(2) <---------ARR14(2)     --------->MYB52(1)   <---------ARR14(2)        --------->AHL20(1)<---------GLK1(1)      <-----------GT1       --------->ARR14(2)        --------->ARR11(3)<---------CCA1(2)   <---------ICU4          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------AHL20(2)           <----------TaMYB80 --------->AHL20(2)     --------->MYB52(2)------>MYB46(1) -----AHL20(2)            --------->GLK1(1)  <---------AHL20(2)    <-------TEIL<---------MYB59  <---- ---->AHL20(2)           ---------->TaMYB80  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)------>MYB46(1)<----   aaattcgaaatatatggatattactagtatatccccatctgaatctattaattaccagaaaacccatggttcgtttccgaaccaaaccacccgaatcact  1264900                                            --------->LBD16      --------->ATHB12               --------->AHL20(1)      <---------ICU4                 --------->ARR11(3)      --------->ATHB51               <---------ARR11(3)     --------->ICU4                  <---------ICU4     <---------YAB1            --------->TOE1(3)--------->GLK1(1)   --------->YAB1              --------->TOE2(3)<---------GLK1(1)   <---------ICU4     --------->AHL20(2)   <---------LBD16                  <---------YAB1        <-- ------DOF2          --------->AHL20(2)   <---------LBD16                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -----DAG2       --------->AHL20(2)  <---------AHL20(1)               <----------DOF2   <---------MYB52(1)   tttactcattatttgaaaatcaaataaaaaaaaccctaatattttcagggatttcccaattcgaatttcattctttttctcattacaaccgtttttgatt  1265000                                   --------->LBD16                                  --------->RAP2.6(2)                                  ------->GAMYB                                  --------->ANAC58                                  --------->ANAC58                                  --------->ANAC46                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                <---------At5g28300                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->At4g35610                      <---------At4g35610                    --------->MYB46(3)                   <---------At5g28300 --------->HSFB2a(1)                  --------->ARR14(2)   <---------HSFB2a(1)                  <-----------GT1--------->MYB46(3)               <------------CBF            --------->TOE2(3)  <-----------GT1                 <---------ATHB12         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         --------->AHL20(2)                         ----     <<<<<<<<<TBF1<---------ARR14(2) ----------->RAV1(1)   ------------>CBF                      <---  <<<<<<<<<TBF1   <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------GT1------>ZmHOX2a(1) --------->MYB52(1)   <----------DOF2 <---------MYB46(3)       <-------   tttcttcttcttctccttagtaaccgctgaaattaaccgcaacattccatatttctttaaattcaatcgattgttcaccagtatttctgttctatttccg  1265100                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            ---------->DOF2                                                                          <------NtERF2                                                                         ------>NtERF2                                                                         --------->LBD16                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                        <---------DEAR3(1)                                                                        --------->RAP2.3(2)                                                                        --------->RAP2.3(3)                                                                        --------->RRTF1(3)                                                                        --------->RRTF1(2)                                                                        --------->DREB2C(2)                                                                        --------->DEAR3(1)                                                                       --------->DEAR4(2)                                                                       --------->RRTF1(1)                                                                       --------->ATERF1(1)                                                                       <------NtERF2                                                                       --------->ERF1                                                                       <---------LBD16              <                                                                       --------->ORA47(2)           <                                                                       --------->RAP2.3(1)          -                                                                      ------>NtERF2                 -                                                                      <---------ATERF1(1)           <                                                                      <---------RAP2.6(1)           <                                                                      <---------DEAR4(2)           <-                                                                      <---------RRTF1(1)           --                                                                      --------->ABI4(2)            --                                                                      <---------RAP2.3(1)          <-                                                                      <---------ERF1               --                                                                     <---------RAP2.3(2)           --                                                                     --------->DEAR3(1)            <-                                                                     <---------DEAR3(1)           ---                                                                    <------NtERF2                 ---                                                                    --------->ATERF1(1)           <--                                                                    --------->RAP2.3(1)           <--                                                                   ------>NtERF2                  ---                                                                   <---------ATERF1(1)            ---                                                                   <---------RAP2.6(1)            ---                                                                   <---------RAP2.3(1)            ---                           ------->MYC3                            <---------DEAR3(2)             ---                           <-------MYC3                            <---------ORA47(2)             ---                          <---------ANAC58                         <---------RRTF1(1)            <---                          <---------ANAC46                         <---------ERF1                <---                  xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------DEAR3(1)             <---                 <------NtERF2        <---------WRKY38(1)         --------->DEAR3(1)             <---                ------>NtERF2        --------->WRKY18(1)          <---------At1g77200            ----               *TSSxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------RAP2.3(3)           <----            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --------->ATERF1(1)            <----         --------->WRKY18(1)--------->ALFIN1     ---------->DOF2<-----------HVH21               -----       --------->WOX13(1) <---------ANAC58   ---------->DOF2  --------->HSFC1(2)            --------- ----->ARR14(2)--------->RAP2.6(2)  <-----------HVH21         <---------HSFB2a(1)     ---------->DOF2 ------ARR14(2)--------->DEAR3(1)<------ZmHOX2a(1)            <---------HSFC1(2)  xxxxxxxxxxxxxxxxxxx ----GT1<-----------HVH21 <---------O2<---------WRKY12      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---   attcgaaatcagtcatgccgcctaagacgcgtggaggaggtcaagggaaaagaaaggagagagaagcgtcggcgccggcaaagacagagaaagttaaggc  1265200                                                       <------NtERF2        --------->DAG2                                --------->LBD16    <------NtERF2                                     <---------ATERF1(1)   --------->LBD16                                    ------>NtERF2  <---------DEAR3(1)                                 <---------ATERF1(2)  <---------ANAC46                                   --------->RAP2.3(2) --------->ATERF1(1)                                 <---------DEAR3(1) <---------LBD16                                     --------->RAP2.3(3) <------NtERF2                                       --------->ATERF1(2) ---------RAP2.3(1)                                  --------->DEAR3(1) ---------ORA47(2)                                  --------->ATERF1(1)           <------NtERF2 -------->LBD16                                     <---------LBD16              ------>NtERF2 ----->NtERF2                                       <------NtERF2               ----------->HVH21 ---------ATERF1(1)                                 --------->RAP2.6(1)         --------->DREB2C(2) ---------ERF1                                      --------->DEAR4(2)          --------->At1g77200 --------DEAR3(1)                                   --------->RRTF1(1)          --------->DEAR3(1) ------->RAP2.3(2)                                  --------->ORA47(2)          --------->RAP2.3(2) ------->RAP2.3(3)                                  --------->DEAR3(2)          --------->RAP2.3(3) --------RAP2.3(2)                                  --------->RAP2.3(1)        --------->ATERF1(1) ------->ATERF1(2)                                  --------->ERF1             --------->DEAR3(2) ------->DEAR3(1)                                  ------>NtERF2               --------->RAP2.6(1) --------ATERF1(2)                                 <---------ORA47(2)          --------->ORA47(2) ------>ORA47(2)                                   <---------ATERF1(1)         --------->RAP2.3(1) ------>DEAR3(2)                                   <---------RRTF1(1)          --------->ERF1 ----NtERF2                                        <---------RAP2.3(1)         --------->RRTF1(1) -------LBD16                                      <---------DEAR4(2)          <------NtERF2 ------>ATERF1(1)                                 --------->DEAR3(1)          <---------DEAR4(2) ------>RAP2.6(1)                                 <---------DEAR3(1)          <---------ATERF1(1) ------>RAP2.3(1)                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ERF1                                    <xxxxxxxxxxxxxxxxsmallRNA(i)  ------>NtERF2 ------>DEAR4(2)                          <---------HSFB2a(1)                 <---------RAP2.3(1) ------>RRTF1(1)            --------->LBD16   <-----------RAV1(2)            <---------DEAR3(1) ------ORA47(2)             <------NtERF2 <---------HSFC1(2)                 --------->DEAR3(1) ------RAP2.3(1)           --------->ANAC46  <-------TEIL                   --------->ATERF1(1) ------DEAR4(2)           <---------LBD16 --------->HSFC1(2)             <-----------RAV1(2) ------RRTF1(1)          --------->ATERF1(1)<-----------HVH21           <-------TEIL                < -->NtERF2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ATERF1(1)   --------->CCA1(2)           <- -----DEAR3(1)       <---------HSFB2a(1) <---------TOE1(2)            <---------ARR14(2)          <-- -----RAP2.3(2)      --------->HSFB2a(1) <---------TOE1(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxx ---->DEAR3(1)       --------->HSFC1(2)xxxxxxxxxxxxxxxx>smallRNA(i)   --------->ARR14(2)       <xxxxx ->DOF2---------->DOF2  <---------ATERF1(1)xxxxxxxxxxxxxxxx>smallRNA(s)--------->GLK1(2)       <----- x>smallRNA(si3)    --------->DAG2---------->DOF2--------->RAP2.3(1)----------->ARR10   ---------->DOF2 ------ATERF1(1)<------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)---------->DOF2--------->RAP2.3(1)<-----   gccggcggagaaagtgaaggagaaggtgcccgcgaagaaagcgaaggttcaggcgccggcgaagaaagcgaagattcaggcgccgacgaagaaagtgaag  1265300         <------NtERF2        <---------ATERF1(1)        ------>NtERF2        --------->LBD16       <---------DEAR3(1)       --------->RAP2.3(3)       --------->ATERF1(2)                            <------NtERF2       <---------ATERF1(2)                          --------->ATERF1(2)       --------->DEAR3(1)                           --------->RAP2.6(2)       --------->RAP2.3(2)                         <---------LBD16      --------->ERF1                               <------NtERF2      --------->RRTF1(1)                       <---------ATERF1(1)      --------->RAP2.6(1)                   --------->At4g35610      --------->ATERF1(1)            <----------CDC5<---------ATERF1(2)      <------NtERF2                 --------->At4g35610      --------->DEAR4(2)            --------->ZAT2 --------->RAP2.3(1)      --------->RAP2.3(1)           <---------ZAT2 --------->ATERF1(1)      --------->ORA47(2)            <------NtERF2<---------DEAR3(1)      --------->DEAR3(2)            <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------LBD16               ----------->RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------>NtERF2                 ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ATERF1(1)           --------->LBD16<---------ATERF1(1)     <---------RRTF1(1)           --------->ATERF1(2)------>NtERF2     <---------ORA47(2)           xxxxxxxxxxxxxxxx>smallRNA(s)                   --------->MYB46(3)     <---------DEAR4(2)           <---------RAP2.6(2)<---------ATERF1(1)        --------->ANAC58     <---------RAP2.3(1)          <---------ANAC46<---------RAP2.3(1)       --------->AtLEC2    <---------DEAR3(1)            <---------ATERF1(2)--------->LBD16     <---------DEAR3(1)    --------->DEAR3(1)            <---------RAP2.3(2)<---------DEAR3(2) <------NtERF2   --------->RAP2.3(1)            <---------DEAR3(1)--------->DEAR3(1)  <---------------------WRI1   --------->ATERF1(1)         --------->ALFIN1<-----------HVH21       ------>NtERF2 <xxxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i) -----------RAV1(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->DEAR3(1)         ---- ------TEIL                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ATERF1(1)        ----- ---------HVH21   ----------->GT1<---------LBD16--------->ATERF1(1)----------->HVH21 <-----------RAV1(1) xxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxsmallRNA(s)    ---------->DOF2<------ZmHOX2a(1)--------->MYB52(1)   --------->ANAC58----- ----TOE2(3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46<---------ATERF1(1)         ----- ----TOE1(3)     ----------->GT1 --------->RAP2.6(3)<---------DEAR3(1)<---------DEAR3(1)    xxxxxxxxx   gttcaggcgccggcgaagaaagataaatagaaagtgccggctgaggagcagtcgccggcacaaacgactgcgacggcgatgcaaccaatgtggctccaac  1265400                                       ------->GAMYB                               --------->At4g35610      xxxxxxxxxxxxxxxx>smallRNA(i)    --------->MYB46(3)      ------>NtERF2           <---------ATERF1(1)    --------->At4g35610       ------>NtERF2   <---------RAP2.3(1)        <---------RAP2.3(1)                                                ----   <---------ATERF1(1)        <---------DEAR3(2)                                                 <---  <---------DEAR3(1)         <---------RAP2.3(2)            <---------YAB1                       <--- <---------At4g35610        --------->RAP2.6(3)         <---------WOX13(1)                       ---- --------->At4g35610      --------->MYB46(3)           <---------ANAC46                         ----- xxxxxxxsmallRNA(fl3)------>NtERF2    ----------->HVH21<---------ANAC58                    --------->KAN4(2) --->GAMYB --------->MYB46(3)<---------DEAR3(1)       <---------MYB46(3)                --------->YAB1 ---->MYB46(3) xxxxxxxxxxxxxxxx>smallRNA(i)         <---------MYB52(1)             ----------->HVH21 ------>HVH21  --------->MYB52(1)------>NtERF2     <-------GAMYB            --------->YAB1<----------TaMYB80 ---->ANAC46------->GAMYB ----------->HVH21  --------->GLK1(1)             <---------YAB1 --------->KAN4(1) xxxxxxxxxxxx>smallRNA(fl3)------->GAMYB<---------LBD16<---------ANAC58 <---------AHL20(2)<---------KAN4(1)   gacagcggctccaacgacaacggctccaacgacggctccaacgacggagagcccgttgcttgatgattctacattttatgatgctctgaagcatattcct  1265500                              <---------bZIP60(2)                                              <-----               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            ------               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              <----- ----->ZAT2   <---------ARR14(2)                                                               ------ ------At4g35610              <---------ANAC46                         >>>>>>>>>TBF1          ------- ------ZAT2   --------->ARR14(2)     --------->At4g35610 --------->ANAC58                    <------- ----->At4g35610             <---------AtMYB61           --------->ANAC58  --------->GLK1(2)xxxxxxxxx ->ZmHOX2a(1) <---------KAN4(2) --------->ALFIN1 ---------->DOF2    >>>>>>>>>TBF1        --------->At4g35610   gctgaagaaattcaagaatatgcaaactgatgaggtggaagatgaaaatgaaaaagaagaagcaagtgaagaagaagaatcagggagtagtagccgaacc  1265600  Previous    Next  AGI:  At2g03990.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 1265115    to: 1267023    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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