Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ANAC55(2)                                                     <---------ANAC55(2)    --------->ARR11(3)     <----------DOF2                                <-------TEIL         <---------HSFB2a(2)  <---------WRKY18(1)                           --------->ANAC58         --------->HSFB2a(2) ----------DOF2                          <---------TOE2(3)          <---------ARR11(3)       <------- --------ANAC58                        <---------AHL20(2)      <---------WOX13(1)    --------->AtMYB61 --------ANAC58                        --------->AHL20(2)    <------ZmHOX2a(1)    --------->ZAT6 -----TEIL                     --------->YAB1   --------->ANAC58    --------->ARR11(3) -------->P <-- -->DAG2               <-------TEIL   --------->AHL20(2)    <---------YAB1  <---------ARR11(3)    <-- ->DOF2     <---------ARR11(3)<---------ATHB12  --------->ANAC46   <---------GLK1(1)<---------MYB52(2)   tgcttgactttgaagacattagacatacacaaatcatcaaattaatgaacacgatacatattaggattgatatctcgagaacttccactaacccaatctt  1228900                                     <---------ATHB12                                 <---------ATHB12                       ------->TEIL                      --------->ANAC58          <---------ICU4   ------>ZmHOX2a(2)                      --------->ANAC58 <----------DOF2          <------ZmHOX2a(2)                      --------->ANAC46--------->ATHB12         <---------ARR14(2) --ATHB12    ---------->ID1    --------->WOX13(1)              --------->ARR14(2) -------ANAC58      <-----------GT1--------->WOX13(1)          <---------ARR11(3) -------ANAC58<---------------------WRI1        --------->ZAT6 --------->ARR11(3)   gcgagacttgagcttgttctattcacacaatgtcaatcaatctttggtgatcactaccaatacaagatcccttgaatctaaaaacacttctcatcgtttc  1229000                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                               <-----                                                                                              ------>NtERF2                        --------->ANAC58                                                     --------                        --------->ANAC58                 <---------ABI4(2)                   --------                       --------->WOX13(1)  <---------ANAC58     <----------DOF2              --------           <----------DOF2       <---------HSFB2a(2)     --------->ZAT18                  <---------ANAC58      <---------At4g35610        ------>ZmHOX2a(1)       <---------ZAT14                  <---------ANAC58      --------->At4g35610<---------ATHB12  <---------ANAC58------->TEIL               <---------ZAT14   ttatttgcagcggctttgtatttgacaatcaagtcctcgaggttagcttgagattagaatgcaccgcttgtaagtcatccaagaagtctgtagcgtcgcc  1229100                          <---------MYB52(1)                    <------NtERF2      ----------->GT1    <---------SPL7                <---------ANAC58                            -- ----------->TGA1------>NtERF2                         <---------ANAC46                            -- --------ICU4   --------->LBD16                --------->ANAC58                          <---------AHL20(2) ------->YAB1  <---------RAP2.6(2)             --------->ANAC58                         --------->AHL20(1) ------>ICU4  <---------LBD16              --------->ANAC58                             --------->AHL20(2) -NtERF2    --------->ARR14(2)         <---------------------WRI1                       <---------AHL20(1) ->DEAR3(1)<---------CCA1(2)--------->DAG2 --------->ANAC58                    --------->ZAT6     <-- ->RAP2.3(3)<-----------GT1--------->SPL7----------->RAV1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->RAP2.3(2)<---------ARR14(2)    ---------->DOF2      <---------ANAC58      <-----------GT1  -------   atgatgacgagttatatccggccgagtcgtaaggtccaaagggccacacaaacaatgtcgtagacaacatgaaatgagttaaccctacaatataatcaaa  1229200                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                             <-------                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                        <---------MYB46(3)                                                                                        <---------DEAR3(2)                                                                                       <---------DEAR3(1)                                                                                       <---------ANAC46                                                                                      <---------LBD16                                                                                      ------>NtERF2                                                                                      <------NtERF2                                                                                      <---------At4g35610                                                                                      --------->ATERF1(1)                                                                                     *TSS <---------ARR14(2)                                                                                    <---------RRTF1(2)                                                                                    <---------DEAR3(1)                                                                                    <---------RAP2.3(2)                                 --------->ICU4                                     <---------RAP2.6(2)        ---------->DOF2      ------------>CBF                                      <-------TEIL------ ------->PCF2 <--------P --------->At4g35610 <------ZmHOX2a(2)           <---------ATHB12 --------->ARR14(2) ------->ARR14(2)        <------NtERF2      <---------ARR14(2)         --------->WOX13(1)<------NtERF2 ----ZmHOX2a(1)----------->ARR10 --------->GLK1(2)                   ------------>CBF<---------RAP2.3(1) --->DOF2--------->DAG2  <---------At4g35610--------->ARR11(3) <---------ANAC55(2) <---------LBD16<--   ggaccctcaaaaaagggtagacatggcagagggcaattctgaaggcgatctagggtttcagtatcatgtgtctcaatcaagtagatgcggcggatcggcc  1229300        --------->LBD16      <---------LBD16 <---------MYB52(1) ------ATERF1(1) ---NtERF2  --------->YAB1 -->NtERF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        ----------->GT1 ---->DEAR3(1)                                                      <-----------RAV1(1) ---->RAP2.3(2)                                                     --------->ALFIN1 ---->RAP2.6(2)                                              <---------At4g35610 -----DEAR3(1)                                               ----------->RAV1(2) --->SPL7  <---------ATHB12                                  ===================RAV --->ATERF1(1)                                               --------->At4g35610 ---ATERF1(1)          <---------TGA1a                     --------->REM1(1) --SPL7--------->LBD16 <---------O2                        <---------ALFIN1 --->RAP2.3(1)<-----------RAV1(1)                        <-----------HVH21 ----NtERF2<------ZmHOX2a(2)                    --------->ZAT6 ----------->HVH21          ------->TEIL   gccgttttccccgatcatgttgcagacgttggcagaaaacattcagactaactctgaagcttcacctgaagtgttgcaaaaactattgtatgtatcaatt  1229400                                                           ----------->RAV1(1)                                                          <---------ETT(1)                                                          --------->ANAC46                                                   <------MYB46(1)                                                   <------MYB83                                  ----                           --------->ATHB12        ----------->GT1                               <---                          <---------YAB1        <------ZmHOX2a(1)                            <-------TEIL                        --------->YAB1    xxxxxxxxxxxxxxxx>smallRNA(i)                      ---------   gttcaaaatcgtccaactctttcgaaacatgatttcagtgtaaccatggaggatggtaatccgacagtccaagttccatatgaaatatttgaagattcaa  1229500                                                                        <---------YAB1                                                                     --------->ICU4                                                                 <-----------TGA1         <---------LBD16              ------>ZmHOX2a(2)                                 --------->ANAC46          <---------HSFB2a(2)             --------->CCA1(2)                                  --------->O2              --------->HSFB2a(2)             <------ZmHOX2a(2)                                  ==================================bZIP_DOF            <-----------ARR10                                   --------->ANAC58<---------ARR14(3)            <---------ARR14(3)           --------->At4g35610    --------->bZIP60(2)    <----------DOF2            <---------ARR14(2)         --------->MYB46(3)       --------->TGA1a --------->ARR14(2)            --------->AGP1 --------->HSFC1(2)                   --------->ANAC58--------->ARR11(3)            --------->ARR14(3)       --------->MYB52(1)         <---------O2    <---------ARR11(3)            --------->ARR11(3)      ------->GAMYB<-----------RAV1(1) <---------YAB1   <---------ANAC58            --------->ARR14(2)      ======================================MYC_MYB<------ZmHOX2a(2)            <---------ARR11(3)     <---------MYB52(2)          <-----------STF1 --------->AGP1 ------>ZmHOX2a(1)         <---------HSFC1(2)<---------ALFIN1 <---------ALFIN1  <---------ARR14(2) ===================HOX2a_HOX2a    <---------MYB111(2)       <---------WRKY12   <---------AGP1 ====================HOX2a_HOX2a   <---------MYB55(2)  ===================bZIP_DOF------>ZmHOX2a(2) ----->ARR14(2)            --------->HSFB2a(1)  <-------MYC3 <---------WRKY38(1)<-----------ARR10 ------ARR14(2)    --------->ATHB12--------->MYB46(3)  ---------->DOF2<---------ICU4  <---------ANAC58 >CCA1(2) ----------->ARR10<---------HSFB2a(1)  ------->MYC3 <-------TEIL       --------->ARR14(3)---   atcctctatgggaagatctacttattggaaaattccaacaaaccgctccacatgttgcaaaggtccacgtcattatgaacaagatcttgcttctcggaga  1229600                                          --------->AHL20(2)                 <---------ANAC58         --------->YAB1                 --------->ZAT2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <------ZmHOX2a(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ZAT14<---------GLK1(2)        <---------YAB1 <---------AHL20(2)<<<<<<<<<ARR2          <-------TEIL  <------ZmHOX2a(1) ------>AHL20(2) <---------ANAC58      --------->WOX13(1)    <---------DEAR3(2)--------->ARR14(2)   taaaatagtgaagatagatgcttatttagttgatgccaaaacaatcaaatttagaatcagagacggttcagtaggagctaggattcttcatcagggtatg  1229700                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           --------->LBD16                                                           ------>NtERF2                                                           ----------->RAV1(1)                                                          --------->ANAC58                                                          --------->DEAR3(1)                                                          --------->ANAC46                                                          --------->ANAC58                                                         <---------LBD16                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                                      <---------HSFC1(2)                      <---------WOX13(1)              <---------HSFB2a(1)                     >>>>>>>>>ARR2                    --------->HSFB2a(1)                     >>>>>>>>>ARR1                    --------->HSFC1(2)                    --------->YAB1                    <---------At4g35610                    --------->ATHB12                  --------->At4g35610                   <---------ATHB12                <------ZmHOX2a(1)              <-----------RAV1(1)                   <---------YAB1        --------->ANAC55(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ARR14(2)         =====================HOX2a_HOX2a         ----------------->AGL1          --------->ARR14(2)         ------>ZmHOX2a(2)<---------ZAT2 <---------AHL20(2)      --------->At4g35610          <---------ARR11(3) --------->ZAT2--------->AHL20(2)  <---------GLK1(1)      <---------At4g35610          --------->ARR11(3)----------->ARR10       ------>NtERF2   tggaacatagctgatatgcctatgattgtttctaaatgatctcaagtgatagaggaagctccgccagagattaaatcgatgcctatgtgggtatcacttc  1229800  Previous    Next  AGI:  At2g03940.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.9e-15 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 1229285    to: 1232496    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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