Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------AHL20(2)        <----------DOF2      <---------ANAC46  <---------ANAC58  <---------ANAC58  <-------GAMYB <------MYB46(1) --------->MYB55(2) --------->MYB52(2)                                               --------->LBD16 <---------DEAR3(2)                                              <---------ANAC58 <------MYB83                 <---------ZAT2           ------>ZmHOX2a(2)                --------->HSFC1(2) <---------MYB46(3)          ------>NtERF2            --------->GLK1(1)     xxxxxxxxxxxxxxxx>smallRNA(i) -------->MYB111(1)       --------->At4g35610         <------ZmHOX2a(2)   <---------MYB59 <----------DOF2 ---------MYB46(3)        <---------At4g35610         xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxx ---------AtMYB61 <---------ANAC58                   <---------ARR11(3)  <---------At4g35610 -------- -------P --------->AHL20(2)--------->ZAT18          --------->ARR11(3)  --------->At4g35610<-------- -----GAMYB       --------->ANAC55(2)            <-----------GT1 <---------ANAC58       --------->HSFB2a(1) -----TOE1(3)     <---------ANAC58              --------->TOE2(2)<---------ANAC46       <---------HSFC1(2) -----TOE2(3)   <-----------GT1       --------->ARR11(3)        <---------LBD16<----------DOF2   ggttggttgcctttaattttacgtcttgagcgggctggaatatgttgttatctacgatctccaagttgcgcaagtagctaactttgccgaagctttcatt  1228000                                         --------->ARR14(2)                                         <---------ARR14(2)                                        <------NtERF2                                       <------NtERF2                                     <---------LBD16                                   <---------DEAR3(2)              --------->ANAC58                                  <---------At1g77200              ------>MYB83                                  --------->ETT(2)                 ------>MYB46(1)                                  <---------RAP2.6(2)              --------->ANAC58                                  <---------DREB2C(2)              --------->ANAC46                                 --------->RAP2.6(3)              --------->ABI4(1)                                 --------->DDF1                  --------->DEAR3(1)                           <---------ANAC46                      --------->AtMYB61                           <---------ANAC58                      <---------ALFIN1                      <-------GAMYB<---------SPL7               --------->MYB46(3)                 ----------->RAV1(2)<------NtERF2             <-----------GT1                 --------->ZAT2 <-----------HVH21           ------>ZmHOX2a(2)                 <---------ZAT2<-----------RAV1(1)        --------->ARR11(3)            ------>NtERF2  <---------ANAC58          --------->ZAT18                       --------->At4g35610    ----------->HVH21 <---------ANAC58 --------->LBD16    <-----------ARR10                ---------- xxx>smallRNA(i) ==========================RAV       <---------ZAT14      <---------ZAT18 --------->ANAC58 ->ATHB12--------->LBD16<---------MYB46(3)  <----------DOF2<------ZmHOX2a(2)  <---------ALFIN1     -- -YAB1 <---------LBD16<---------ANAC58--------->RAP2.6(2) <---------ARR11(3)------->TEIL  --------->ANAC58   ggggaagtgaccggagcccatctgggttgtcgtatgtcggccggaactttgtgagttcacgatctcaccaccccattgcacctcgtctccataagctaaa  1228100                                                         --------->AtMYB61                                                         ------->GAMYB                            <---------MYB55(2)          <---------MYB55(2)                      --------->ARR14(2)           --------->ANAC58            <---------At4g35610                    --------->ANAC58            ----------->RAV1(2)                    --------->ANAC46            --------->ZAT2  --------->MYB46(3) <---------ALFIN1            <---------ZAT2  <---------ATHB12 ------>ZmHOX2a(2)            --------->At4g35610 <---------ATHB12 <---------ALFIN1      <-----------ARR10    ------>MYB46(1)  <------ZmHOX2a(2)           <----------DOF2      --------->GLK1(2)    --------->ANAC46 --------->PCF2--------->MYB52(1)      <---------ARR11(3)   -------->P--------->ATHB12   --------->MYB46(3)     ------>ZmHOX2a(2) ---- ->GT1--------->ARR11(3)   ------>MYB83    <---------ARR14(2)   --------->GLK1(2)               <---- --------->GT1        <---------ARR14(2)   --------->ARR14(2)  <---------GLK1(2) ------>ZmHOX2a(1)<--   tttgtgaaaatctcggctggccagtatccaaccaatgaattgttggatcccacactcaaccaccagtttctgtgcttttgatcctacataatttgtttat  1228200           <-----------GT1        <---------ANAC55(2)        --------->ANAC55(2)                               <----------DOF2        ----------->GT1                              --------->HSFB2a(1)          ------>MYB83      - <---------ICU4             ----------->GT1          <---------HSFB2a(1)          ------>MYB46(1)  <- --------->YAB1   <---------AHL20(2)             ----------->GT1 --------->YAB1--------->HSFB2a(1) -- ----->AHL20(2)   --------->AHL20(2)       --------->TOE2(3)  --------->YAB1 <-----------GT1      --- -----YAB1 ------->TEIL ---------->DOF2   <---------ANAC55(2)<---------YAB1<---------MYB52(2)<-------TEIL -------AHL20(2) --------->AHL20(2)       <---------------AGL15 <---------YAB1-------->P   <---------ARR14(2)   taaaaatgatatgtaactatttatttgaaagtgtaaattttgttacataaatagaaaattcttttgataataaacaaactaaccttccatatggatacag  1228300                ------>NtERF2              <---------ANAC58              <---------ANAC58          <---------ANAC58          <---------ANAC58         <---------MYB46(3) ------>ZmHOX2a(2)                            ------>NtERF2  <-----------HVH21       --------->ZAT14 -------->At4g35610                         --------->ATERF1(1)        ----------->GT1 --------ARR11(3)                          ------>NtERF2    --------->bZIP60(1)     <------ZmHOX2a(1) ------->ARR11(3)                          <---------ATERF1(1)       <---------ANAC46<---------ZAT14 ------>ZAT14<---------ATERF1(1)       <-----------RAV1(1)  <---------bZIP60(1)    --------->ANAC46   tgatctcaaattggttgcctccgaatgctgagatgggagtaatggtgcctccaaaaacaatgttgtcactggtttgtataaaaccaggacactggagatt  1228400                                                  --------->AHL20(2)                                -                                                  --------->AHL20(1)                            <----                                 --------->AHL20(2)                                       <---------AHL20(2)                      <---------MYB52(1)          <---------AHL20(2)                      --------->AHL20(2)                    --------->ANAC46             <---------AHL20(2)                      --------->AHL20(2)                 --------->ARR14(2)              --------->AHL20(2)                 --------->AHL20(2)                 <---------ARR14(2)           <---------AHL20(2)             ----------->GT1    <----      --------->LBD16<-----------HVH21       <---------AHL20(2)            <------------CBF   -------     <---------HSFB2a(2)      *TSS<---------AHL20(2)              --------->YAB1   --------->AHL20(2)     --------->HSFB2a(2)     ----------->GT1 --------->AHL20(2)  <---------YAB1    <---------AHL20(2)   gtagcatccagaaacattgtatccgtcactctggataaaatttcatattaattttattagttaacttatcaaaaccatattgtaaataattttaaattaa  1228500                                           <---------ARR14(2)                                           --------->ARR14(2)                                        <---------ANAC46 <---------ANAC58                                       <---------LBD16   <---------ANAC46                                       --------->At4g35610       ---------->DOF2 <---------ZAT14                                       <-----------------------TaNAC69(2)      --------->ZAT14 ---------->GT1                  <---------ZAT14         <---------ANAC58    --------------->AtSPL8 -----ANAC55(2)                  --------->ZAT14        <-----------------------TaNAC69(2) -----TOE2(3)                   <---------REM1(1)   --------->YAB1   --------->ARR11(3) -->AHL20(2)                    <---------ANAC46   <---------AHL20(2)<---------ARR11(3)             <   gtatgtgaaaaaaaaaaaaaaactagataatatggtgtagtagcggaaactatataatgacttgaagaaaagaacttgctgagtactcttatgtcaactc  1228600                  <------ZmHOX2a(1)          --------->ATHB12        --------->SPL7       ------>MYB46(1)                                                                           <---       ------>MYB83                           <---------ZAT14                                    <---       --------->MYB52(1)                   --------->ZAT14                <----------DOF2     ------      <---------SPL7                        <---------ZAT14                <---------DAG2      ------     <---------MYB59                      --------------->AtSPL8  --------->ANAC58       <---------TOE1(3)     <---------MYB46(2)       --------->CCA1(2)               --------->ANAC58           <---------TOE2(3)     --------->MYB46(3)      <---------ARR11(3)               --------->ANAC58   ----------->GT1<---- ----------DOF2 <---------TOE1(2)         <---------------AtSPL8  --------->ANAC58    --------->ICU4   gggtttaccgaacgattgtaggattgagcaagataaacaatttgagagtactcttctcaatgctaagcaagacaaaactttttgggtaattaaggttacc  1228700                                                            --------->ARR14(2)                                                            <---------ARR14(2)         <---------AHL20(2)                    <---------ICU4    <---------MYB52(1)                         <------------ATHB5                                   <   <-------GAMYB                               --------->ATHB51                                    <- ------DAG2   <---------GLK1(2)                <--------ATHB1             <---------ICU4          <-- -------DOF2  --------->ARR11(3)              --------->ICU4--------->GLK1(2)                 ------- ----------->AGL1              --------->DAG2 <---------ATHB12           <---------YAB1     --------- ----------->AG               ---------->DOF2 <---------ATHB51        <-------TEIL   --------->MYB52(1) -----DAG2    <---------ARR11(3)            --------->YAB1 <---------CCA1(2)    ----------->RAV1(1)<-   ttttcggttatttatagattttcttcaaaaacaaaagtgattacaacaataattcgaccccaaatctgaagcttcattatcgccacaaaacagagaaagg  1228800                                                     <---------ANAC55(2)                                                     --------->ANAC55(2)    --------->ARR11(3)     <----------DOF2                                <-------TEIL         <---------HSFB2a(2)  <---------WRKY18(1)                           --------->ANAC46         --------->HSFB2a(2) ----------DOF2                          <---------TOE2(3)          <---------ARR11(3)       <------- --------ANAC58                        --------->AHL20(2)      <---------WOX13(1)    --------->AtMYB61 -----TEIL                             <---------AHL20(2)    <------ZmHOX2a(1)    --------->ZAT6 -->DAG2                       --------->YAB1   --------->ANAC58    --------->ARR11(3) -------->P <-- ->DOF2     <---------ARR11(3)<---------ATHB12  --------->ANAC58   <---------GLK1(1)<---------MYB52(2) --------ANAC58        <-------TEIL   --------->AHL20(2)    <---------YAB1  <---------ARR11(3)    <--   tgcttgactttgaagacattagacatacacaaatcatcaaattaatgaacacgatacatattaggattgatatctcgagaacttccactaacccaatctt  1228900  Previous    Next  AGI:  At2g03935.1    Description:  expressed protein, no suitable start codon could be identified. This may be a pseudogene. Range:  from: 1227746    to: 1228430    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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