Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->TOE2(3)                                                          <---------ICU4                                                          --------->ATHB12                                                          <--------HAHB4                                    <---------ANAC58      -------->ATHB1                                <----------DOF2           --------->YAB1                               <---------DAG2            <---------ATHB12                            <---------WRKY18(1)          --------->ICU4                           ----------->HVH21      ---------->DOF2                           --------->WRKY45  <---------ZAT14                       <---------YAB1        --------->ZAT14  <---------AHL20(2)               ---------->ID1 ----------------->AGL1   --------->WOX13(1)           <---------ANAC58--------->WRKY12  <---------ZAT18  ---------->DOF2           <---------ANAC58--------->WRKY38(1)   --------->AtMYB61<----------ID1        --------->WRKY12  --------->DOF5.7(2)--------->ZAT18<---------YAB1                       ---- ----->ZmHOX2a(1)    --------->YAB1 <---------ANAC46--------->ANAC58             <-------TEIL   ----- ------->TOE1(2)    <---------YAB1  <---------ANAC58--------->ANAC58   ---------->DOF2      ---------   tcctaagaagttgacttgtcttatcatcgttgaccttttcttgtaagtgcaccaaagcaatcattaaaacgagaaaagccgagttcatcgcgatgaaagt  1192600                                                                           --------->YAB1                     --------->ARR14(2)                                   <-------TEIL                  --------->O2                                          <-------MYC2                  --------->ANAC46                                      ------->MYC2                 <---------LBD16                                 <---------MYB52(1)        --------->HSFC1(2)  --------->ANAC46                    ----------->GT1        <---------HSFC1(2)  --------->AtLEC2                    --------->LBD16        --------->HSFB2a(1) --------->ANAC58                  --------->ZAT18    ----------->GT1  <---------ARR14(2)                       <---------LBD16  ---------->DOF2  <---- ---------->DOF2<---------ALFIN1                          <---------------AtSPL3             <------- ------->GT1   <---------REM1(2)                 <------ZmHOX2a(2)      ------->MYC3        --------- ---->ALFIN1  ------>ZmHOX2a(1)                 --------->ARR11(3)      <-------MYC3 <-------GAMYB  - ->DOF2 <---------HSFB2a(1) --------->ANAC58    <---------ARR11(3)----------->HVH21 <---------MYB46(3)   ggtgaaaggaaacttcctccacgggtcttcaggcaaacatttggatgtgagatcatcgaaagagtccggtaacacatgcataaaagcggttgccaaaatt  1192700                       ===============================HOX2a_HOX2a                                 ---   --------->LBD16     ------>ZmHOX2a(2)                                                          ---  --------->ANAC46 <---------YAB1               ---------->DOF2                                   --- -------GT1    <----------DOF2           <---------DEAR3(2)                                 --------- --ICU4  <---------DOF5.7(2)             <---------MYB46(3)                   ---------->DOF2 <------ >ICU4   ---------->DOF2     --------->YAB1    ------>ZmHOX2a(1)   ---------->DOF2         <---------ATHB12 -------->ANAC46--------->ICU4        <-----------HVH21<------ZmHOX2a(1)   ----------->GT1 <------ZmHOX2a(2)   acacccgaagttaaagtctttatgatcccaaatataactcggtcgggtcctaaagcaggaatgtaacgagaaaggaactgtaaagaaacaccgatcatgc  1192800                                                                                --------->At4g35610                                                                             <-------TEIL                                                                     ------>ZmHOX2a(2)                                                                    <---------GLK1(1)                                                                    --------->GLK1(1)                                                                   <---------AGP1                                                                   ------->TEIL --------->ZAT2                                                                   --------->ARR11(3)                                   <----------DOF2                 <---------ARR14(2)                                <---------TOE1(3)                  --------->ARR14(2)                               <-----------GT1                  <---------WOX13(1)      <---------YAB1     --------->YAB1                    <---------bZIP60(1)  <---------ZAT2 ------>ANAC58           <---------ICU4                    --------->bZIP60(1)  <---------At4g35610 ------>ANAC46           <--------HAHB4         <-----------RAV1(1)<---------ARR11(3) ------>ANAC58          <---------ATHB12      <----------DOF2<---------YAB1<---------ARR14(2) >YAB1<---------TOE2(3) --------->ICU4 <-----------GT1  ----------->HVH21  --------->ARR14(2) ---YAB1              --------->WOX13(1) <---------At4g35610 --------->ICU4<---------GLK1(2)    -----   tcgccactaagatagatgggattgcaatcattttaagctttttagcttctttgttgttgtgacatgatggatctccagattcagctctgcattcacttac  1192900                                                      <---------MYB46(3)                                                     --------->ALFIN1               --------->ANAC58                                                  --------->ICU4                    --------->ANAC58                                                  <---------AtMYB61        <----------DOF2      ----- <-----------------AG                     <------ZmHOX2a(1)             --------->ANAC58       ------ <-----------------AGL1                <------ZmHOX2a(1)            <-----------GT1 --------->ANAC46 ---->REM1(1)                <---------ANAC46     <-----------RAV1(1)   --------->ANAC58     *TSS   atctacgtttttggcaagagaggcaaatgtgaagtatagaaggaggattgtaatggtggtgatgagtttataacaagctttagaataagccattgaaaaa  1193000                                                                                  --------->ZAT18                                                                              --------------->AtSPL8                                                                       <---------HSFB2a(2)                                                          <---------ANAC58    <---------------AtSPL8                                                          <---------ANAC58   <------------CBF     <------ZmHOX2a(1)                               <---------ICU4 <---------AHL20(2) ---------->DOF2 ---------->DOF2                                     --------->ATHB12  --------->HSFB2a(2)       ---- ---->DAG2                    <----------DOF2       --------->ICU4 --------->AHL20(2)--------->ANAC46 ---->DOF2  --------->At4g35610              <------ZmHOX2a(1)     <-----------TBP<---------ZAT18----   agtgaaaggacgcttgctgaagttttgtttttcttttgaagacttgaggagaaaatgatttcgtctcaaatttatagaagattgtacacaaaaggaaaac  1193100                                                 --------->ICU4                                           <-------MYC3                                           <-------MYC2                                           ------->MYC4                                           <-------MYC4                                           ------->MYC2                                           <-------PIF5                                           ------->PIF5                                           ------->MYC3                                          --------->O2                                          --------->PIF3(3)                                          <---------PIF3(3)                                        --                                          <---------O2                                       --------                                          --------->TGA1a                                    <-------                                          <---------ANAC46                                   <-------             <---------ZAT2  <----------DOF2 ----------->GT1                                ---------             <---------At4g35610   --------->ANAC58   --------->AHL20(2)                    <--------        --------->ZAT18----------->GT1    <---------TGA1a                                   <--------        --------->ETT(2)     =======================bZIP_DOF                                ---------    --------->ALFIN1 ===============================bZIP_DOF      --------->ARR11(3)       --------->YAB1 ----->TOE2(3)       ---------->DOF2    <---------ALFIN1          <---------ARR11(3)   --------->AHL20(2) ----->TOE1(3)    <---------ANAC46 --------->ANAC58   <---------AHL20(2)             <----------DOF2   ctcaagatggtggacagcttgtgtaaagttactttggaagcaccacgtggaaatattaaaaaatgtgagattttagtttcagtgaaacttttaatataat  1193200   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  --------->CCA1(2) --------->AGP1 <---------ARR11(3) --------->ARR11(3) --------->ARR14(2) <---------ARR14(2) <---------AGP1 --------->ARR10 ->AHL20(2)                                                                             <---------AHL20(2) --AHL20(2)                                                            <---------AHL20(1) --YAB1                                                                --------->AHL20(1) >AHL20(1)                                             <---------GLK1(2)                --------->AHL20(2) -AHL20(1)                               ----------->GT1<---------RVE1(1)           <---------ARR11(3) -AHL20(2)     <----------DOF2      --------->AHL20(2) --------->ARR11(3)           --------->ARR11(3) >AHL20(2)     <---------DAG2    --------->YAB1        <---------ARR11(3)          <---------RVE1(1)-   taagatctgatttagaactttttagaatttttctatgaaaaaatagaaaattgtatagattttttctcacatatatattagtaagagattttaaatactg  1193300                                             --------->ICU4                                           --------->YAB1                                           <--------ATHB1                                           -------->HAHB4                                           <---------ICU4                                          <---------ATHB51                                        --------->YAB1                                      <---------YAB1                                      <---------WOX13(1)                    <---------YAB1  ----------->GT1                 <---------AHL20(2) -------->HAHB4                 --------->AHL20(2) --------->ATHB12             <---------AHL20(2)    <---------YAB1                                                   -       <----------DOF2         <---------AHL20(2)                            ------->TEIL      ------       --------->TOE2(3)   <----------DOF2--------->ICU4                 <---------TOE2(3)   -------- -------->AHL20(2)--------->YAB1   --------->ICU4               --------->MYB52(1)         ----------   gataaattactttaattcatttattatttcttttaaaatgattaataattcttagaacatgtccattaacagattaatgtatgtataacacagaaaagaa  1193400                                                                                                -----                                             <---------AHL20(2)  <---------ANAC55(2)           <-----                                             <-----------GT1     --------->ANAC55(2)    <---------MYB59 ---------->GT1                 <---------AHL20(1)             <---------AHL20(2)    ------>ZmHOX2a(1) --->AHL20(2)                   --------->AHL20(1)             <-----------GT1     <---------ANAC58 --->GT1        ----------->HVH21       ------->TEIL           --------->AHL20(2)  <---------ANAC58 >DOF2     <---------TOE2(3)   --------->AHL20(2)       ----------->GT1         --------->GLK1(1)   aatagaaaaaactaatgtatgacatgcttcaaaatatatatgtatatatacttgtttttggttaattacttaattctctcacatttcctgcctaattgcg  1193500  Previous    Next  AGI:  At2g03900.1    Description:  pseudogene, similar to iron-regulated transporter 2, blastp match of 57% identity and 4.0e-59 P-value to GP|9716482|gb|AAF97510.1|AF246266_2|AF246266 iron-regulated transporter 2 {Lycopersicon esculentum} Range:  from: 1191783    to: 1192993    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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