Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->YAB1                                                        ----------->GT1 --------->AHL20(1)                                 <---------YAB1                            ------- <---------AHL20(2)       --------->YAB1            --------->ICU4          <---------YAB1  <-------- --------->AHL20(2)  ----------->GT1 <---------------AGL15             --------->At4g35610 --------->At4g35610 <---------AHL20(1) <------ZmHOX2a(1)--------------->AGL15    <-----------GT1    --------->KAN4(2) -GT1       ---------->DOF2  --------->YAB1        <----------DOF2     <---------At4g35610 <---------At4g35610   tattttattagattaaaagtaaggagtataatgacaatgctaaatttagttgtctttattgtaatttctattcagatgatgtttattcttcttagctaac  1179800                                                  --------->AHL20(2)                                                  <---------AHL20(1)                                    --------->ARR14(2)                                    <---------ARR14(2)  <---------ANAC58                      <---------ICU4<-----------GT1     <---------ANAC58     --------->ICU4                     --------->AHL20(2)           <---------AHL20(2)        <---------TOE2(3)                 <---------AHL20(2) <---------ARR11(3)  <---------ANAC46  <---------AHL20(2)                 --------->AHL20(2) --------->ARR11(3) <---------LBD16   <---------AHL20(1)    <-----     --------->YAB1  <---------AHL20(2)           --------->AHL20(1)     --------->AHL20(2)    <----- -->MYB52(1)<---------YAB1  ------>ZmHOX2a(1)    --------->AHL20(2)      --------->AHL20(1)    <----- -MYB59   <-----------GT1  <---------MYB59  ----------------->AGL3       <---------AHL20(2)<---------   tgaacaattgtattacgattttattaattcctaactaatatccccttccaattttatttcgggtttagttaacaatttaatgtttagttatcggtttatg  1179900                                                                         <---------ZAT6       <---------TOE1(3)                                                 ----------->GT1       <---------TOE2(3)                                             ================================     <-----------GT1                                                 <------ZmHOX2a(2)     --------->MYB52(1)                                     ================HOX2a_HOX2a            <- ----TOE1(3)                                                ------>ZmHOX2a(1)              <--------- ----YAB1  <-------TEIL                                     <----------DOF2                <--------- ----TOE2(3)          --------->AHL20(2)         <-----------GT1--------->ANAC55(2)    --------->DAG2 -DOF2<---------At5g28300  ----------->GT1     <---------AHL20(2)   <---------ARR11(3)---------->DOF2   gttcaatttacggttcagttcaaataatatggtaaccatggttagggatttaaaccagagtcctttacgagatcagagttaaaaaacaaaaagcgtcact  1180000                                                                                               <-----                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------   --------->TOE1(2)                                                                         --------  --------->HSFB2a(1)                                                                        --------  <---------HSFB2a(1)             ----------->HVH21                                          --------  --------->At4g35610           --------->O2                                                 --------  --------->ZAT2                --------->ANAC58                                             <-------  <---------HSFC1(2)            --------->ANAC46                                            ---------  <---------At4g35610           --------->ANAC55(2)                     --------->GLK1(2)  ------>NtERF2  <---------ZAT2                --------->ANAC58            <---------ANAC58            <---------ALFIN1  --------->HSFC1(2)            <---------O2                <---------ANAC58       --------->ZAT6  <- =====HOX2a_HOX2a              <---------LBD16   --------->GLK1(2)      <---------ARR14(2)--------->ANAC58 -----ZmHOX2a(1)              <-----------GT1   <---------GLK1(2)----------->RAV1(2)   <---------REM1(2) --HVH21                <---------YAB1  --------------------->WRI1      --------->ARR14(2)--------->ANAC46 --TGA1          <---------WOX13(1)<---------ATERF1(1)  <---------MYB52(1)<---------LBD16 --------->ANAC58   aggaagctgcgactatttgactgactctgatttcacgcgactccttgtgagattctccgattgcttcgcctgagtttctgggttaactctccacgccgtc  1180100          <---------ANAC58      <----------DOF2     ------>ZmHOX2a(2)     <---------ICU4   <---------ARR11(3)   --------->ARR11(3) ----MYB52(1) -NtERF2  <---------ANAC58 ---RAP2.6(3) -----HVH21 ->RAP2.3(3)                                                                   ------>NtERF2 ->RAP2.6(2)         <---------AtMYB61                              <---------ARR14(2) ->bZIP60(1)      <---------MYB52(1)                  <-----------GT1         <----------ID1 ->DEAR3(1)<---------DAG2                          --------->ARR14(2)      --------->ALFIN1 --bZIP60(1)     --------->LBD16            --------->GLK1(1)       --------->ARR14(2)          ----- >RAP2.3(1)<----------DOF2                  <---------GLK1(1)       <---------ARR11(1) <------------CBF ---------DOF2 <---------LBD16    <---------ALFIN1 <---------ARR14(2)    ----------->RAV1(2)    -----   actttgatctttgcttttccggtgaggtttcttcatccacttgttgatttccgaattcacacattttccgaatccacttggggccaaagaattgcaaacc  1180200                                                       <----------DOF2                                                      ------>ZmHOX2a(2)                                                    <---------AGP1                                                    --------->AGP1                                                    <---------ARR14(2)                                                    --------->ARR11(3)                                                    <---------ARR14(3)                                                    <---------ARR11(3)                                                    --------->ARR14(2)                                                    --------->ARR14(3)                                                   <---------CCA1(2)         <---------ICU4                     --------->MYB52(2)         --------->YAB1                   <---------MYB52(1)        <---------ATHB12                --------------->AGL15     <---------AHL20(2)                 <---------ANAC58   <---------TOE1(3)                   ------ --------->ICU4                         <---------ANAC58   <---------TOE2(3)               --------->At4g35610 ---->TOE1(3)                       --------->GLK1(1)<------ZmHOX2a(2)                     <---------ZAT14 ---->TOE2(3) *TSS                  <---------GLK1(1)<---------RVE1(1)                     --------->ZAT14   ctaatttttaatcatcaactctattctgaaccaatttgatttccgttttttgcagatctttagggtttttgtttagggaattgtcgaagactctgctcta  1180300              <---------MYB59              --------->TOE2(3)           <-----------GT1      ----------->GT1                                                                    <---------HSFB2a(2)     --------->DAG2                 --------->YAB1                                       --------->HSFB2a(2)    ---------->DOF2                 --------->ATHB12                               <---------At5g28300 ----------->GT1             ---------->DOF2                                      <-----------GT1   - ----->HVH21  --------->TOE1(3)    <---------YAB1    ----------->GT1       <---------MYB46(3)   -----   acatggtaaagtttaacctaaattgaagtagcaaagtatcattgttatatgagtcgagttaattcttaagcgagtgtttgttattcacagtctggaagaa  1180400                                                              <----------ARF1                                      --------->ZAT18      <---------MYB46(3)                                     --------->ALFIN1     <---------AtMYB61 --------->MYB52(1)              --------->DAG2  --------->At4g35610      --------->AHL20(2)    <---- -------->ARR11(1)              --------->MYB52(1) --------->ZAT18        <---------AHL20(2)  <------ ----->DOF2                    --------->CCA1(2) <---------At4g35610----------->GT1        --------->YAB1   aagaaacggttttagatttggccaagtttgtagataagggtgtgcaagttaagctcactggtggtagacaaggtaataaaacaagtgtttctctcattat  1180500                                                                               <---------GLK1(1)                                                                          <---------ANAC46     --------->YAB1                                             <---------ANAC58  ---------->DOF2     <---------TOE2(3)                         <---------ANAC46 -----YAB1<---------YAB1                                        <---------ANAC58     ---------->DOF2 ---ICU4  --------->ICU4                       --------->MYB52(2)      ----------->HVH21     --------   gctccaaagatgatgattctttctaatgttttctctgagatttgtttgatagttgctatgttttttgcttgcagtgactggaactcttaaaggctatgac  1180600                                                                              ------>ZmHOX2a(2)                                                                            --------->ARR11(3)                                                                            <---------ARR11(3)                                                   <---------CCA1(2)  <---------ZAT14                                                <----------DOF2       --------->ZAT14   <---------ANAC58                          <---------ARR11(3)--------->ARR11(3)   <---------ANAC58                          --------->ARR11(3)<---------ARR11(3)         --------->REM1(1) --->HVH21          <---------REM1(1)  <---------TOE1(1)      <---------CCA1(2)     --------->MYB59   caattgcttaatcttgttcttgatgaagcagtcgagttcgttcgaggtatcttttatcttacctatatctactgcattgatcttgttaggctacaattct  1180700  Previous    Next  AGI:  At2g03870.1    Description:  small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative. similar to SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to unknown [Populus trichocarpa] (GB:ABK93714.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 1180214    to: 1181434    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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