Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                         --------->HSFB2a(2)                                       <-                                --------->ARR14(2)                                                 <-                            ------>ZmHOX2a(2)                                                     <--                           --------->CCA1(2)                                                    <----                           <------ZmHOX2a(2)                                                   ------                          --------->GLK1(2)                                                    <-----       <-------TEIL       <---------ARR11(3)                                                   <-----       --------->ZAT14    --------->ARR11(3)                                                   <-----       --------->ZAT18    <---------ARR14(3)                                                  <------       <---------ZAT18    --------->ARR14(2)                                              <---------- ----->ANAC58             <---------AGP1 <---------HSFB2a(2)                             ------->MYC3 ----->ANAC58             <---------ARR14(2)                     <---------LBD16         <-------MYC3 ---DOF2 <----------DOF2  --------->ARR14(3)       <---------DEAR3(1)                 <---------ALFIN1   agtaacaagtgcattcagggcaatagaagatctgaatactcttctgtaaaccttcggtgatatcgacttcggaacgaagacaattcacacacatgttggc  1166600        <------NtERF2       ------>NtERF2    <------MYB46(1)    <------MYB83    <---------ANAC58    <---------ANAC58   <---------MYB46(3)   --------->MYB111(1)   <---------AtMYB61   --------->MYB52(2)   --------->MYB111(2)   --------->MYB46(2)   --------->MYB55(2)  <---------MYB55(1) <---------MYB52(1) --------ANAC58 --------ANAC46                                              --------->DOF5.7(2) --------ANAC58                                             --------->TOE2(3) ----NtERF2                                                 --------->TOE1(3) -----RAP2.3(3)                                            ----------->GT1 --->At4g35610               ----------->RAV1(1)          ------->TEIL ----At4g35610        <---------ALFIN1                    <---------TOE1(3) ----ANAC58          --------->ZAT14                 <-------GAMYB ----ANAC58         --------->AtMYB61               <---------MYB46(3)                       <------- ---MYB46(3)        <---------ALFIN1                --------->MYB52(2)      <-------TEIL     -------- -RAV1(1)          --------->ANAC46            <---------ATHB12   <---------ICU4            <--------   tgcgtttggtgccatgggaacaccacacttgcaacacaatacacttccaatggtttgttgaacgttaaacatgcctgattcatccattactgacatatct  1166700                                                                        <---------HSFC1(1)                                                                        <---------HSFB2a(2)                                                                        --------->HSFC1(1)        ----------->RAV1(1)                              --------->ANAC58     --------->ANAC58                                    <---------ANAC55(2)     --------->ANAC58                     <------ZmHOX2a(2)             --------->HSFB2a(2)     --------->ANAC46                    --------->ARR11(3)   --------->ZAT6                  <------ --ARR11(3)                  --------->YAB1              --------->ANAC58                     <------ ->ARR11(3)       ---------->DOF2        <---------ARR11(3) ----------->RAV1(1)      ----------->GT1 -CCA1(2)       --------->YAB1  <---------ICU4           --------->ANAC46     --------->CCA1(2)   ctgtaacacacaacaaaatcaaaagaatgaataatcaatacaagatcacaaatttgataacgcaacactaatttctagagatttgaatcggaaattaggg  1166800         <---------DEAR3(1)         --------->ANAC46       <---------ALFIN1                                                                     ---------     ------>NtERF2                                       ----------->GT1                --------->TOE2(3)    --------->ANAC46------->GAMYB                 --------->AHL20(2)                    --------->TOE1(2) ---TOE1(3)        <---------MYB52(2)             <---------AHL20(2)        <---------WOX13(1)    --- ---TOE2(3)        --------->MYB46(3)        <---------YAB1              <---------YAB1 --------->TOE1(3)   ttttcgacaccacggcgaacaacaaactcgatgaaacaaaattgattccgattaaaatcgagtttaaaactttctacgattgatacaaaaccttagagaa  1166900                                                                              <---------At4g35610                                                                              --------->At4g35610                                                                              --------->ZAT2                                                                              <---------ZAT2                                                                            <------NtERF2                                                                           --------->LBD16                                                                          <------NtERF2                                                                         <---------LBD16                                                                        <---------ANAC46                                                                      ------>NtERF2                                                                      <-----------HVH21                                                                      <---------ATERF1(1)                                                                     <---------ANAC58                                                                     --------->DEAR3(1)                                                                     --------->O2                                                                     --------->bZIP60(1)                                                                     <---------DEAR3(1)                                                                     <---------bZIP60(1)                                                                     <---------O2                                                                     <---------ANAC58                                                                     <---------ANAC46                                                                    <------NtERF2                                                                    --------->RAP2.3(1)                                                                    --------->ATERF1(1)                                                                    --------->RRTF1(1)                                                                   <---------ERF1                                                                   <---------DEAR4(2)                                                                   ------>NtERF2                                                                   <---------RAP2.3(1)                                                                   <---------ATERF1(1)                                                                   <---------ORA47(2)                                                                  <---------RAP2.3(3)                                                                  <---------RRTF1(3)                                                                  <---------RAP2.3(2)                                                                  <---------DEAR3(1)                             --------->TOE1(2)                    <---------RAP2.6(2)                             --------->TOE2(2)                   --------->ATERF1(1)       <---------TOE1(3)          --------->GLK1(2) ----------->RAV1(2)                 <---------ATERF1(1)    --------->At5g28300      --------->YAB1       -------->P<------ZmHOX2a(1)         <---------DEAR3(1) <---------ARR14(2) >HSFB2a(2)             <---------ANAC58                 --------->DAG2--------->ATERF1(1) <---------TOE2(3) ------>TOE1(2)         <---------ANAC58                ---------->DOF2<------NtERF2 <---------DEAR3(1)   cgaaggaatgagaatcgaagaagattgcttacctgagaaggattatatcggagtttgagaaagcgaaggcggcgtcgcggagcagagacggtgaaggttt  1167000                                                                                     ------->MYC4                                                                                     <-------MYC3                                                                                     <-------MYC4                                                                                     ------->PIF5                                                                                     <-------PIF5                                                                                     ------->MYC2                                                                                     ------->MYC3                                                                                     <-------MYC2                                                                                    --------->TGA1a                                                                                    <---------O2                                                                                    <---------TGA1a                                                                                    =================                                                                                    --------->O2                                                                                    --------->ANAC55(2)                                                                                    --------->ANAC46                                                                               --------->ARR14(2)                                                                           ------>ZmHOX2a(2)                                                                          --------->CCA1(2)                                                                          <------ZmHOX2a(2)                                                                         --------->AGP1                                                                         <---------ARR11(3)     -----                                                                         <---------AGP1<-----------HVH21                                                                        --------->RVE1(1)  <---------YAB1           --------->TOE2(3)          --------->At5g28300            ---------->DOF2=================           --------->TOE1(3) --------->ICU4            --------->AHL20(2)--------->ARR11(3)----------   <---------ANAC46       *TSS--------->ATHB12------->TEIL           =========================bZIP_DOF   ttttttcgtaaaaccctaaaatgttagagaaatgatttgctgtaaatgtatataagaaaaaatagtattcaaaaagatctaaatccacgtgtcatgacag  1167100                           --------->GLK1(2)                          --------->ARR11(3)                          <---------GLK1(2)                      ---------->DOF2                      --------->YAB1                                                          -------                 <---------MYB52(1)                                                          --------                --------->At5g28300                                                          --------                <-------GAMYB                                                            --------->WOX13(1)                <---------RAP2.6(3)                                                   <-----------GT1               ----------->GT1                                                      <---------YAB1 ================================bZIP_DOF         <----------DOF2      <---------ATHB12<---------YAB1 ---->At5g28300<---------ANAC46             <---------AHL20(2)------->TEIL       <---------AHL20(1) =======================MYC_MYB         --------->AHL20(2)    -------->P         --------->AHL20(1)-- ->HVH21  <---------ICU4  <---------ARR11(3)<---------ICU4   <-----------GT1    --------->YAB1-------   taatagactaaattatgccgttaataaagattcttagcccctataaatatttctttttcttatcaacctctcaataactcaaaaatattatcaatctcgt  1167200        <---------AHL20(2)                                                                        ---        --------->AHL20(2)                                           ----------->GT1           ------    <---------AHL20(2)                 <---------AHL20(2)           <---------ZAT6            <------    <---------YAB1                   <---------RVE1(1)           --------->ATHB12            <-------   <---------AHL20(2)                <---------CCA1(1)          <---------YAB1            <---------AHL20(2) -->TOE2(1) ----------->GT1         --------->ARR11(3)        --------->YAB1              --------->AHL20(2) ------->AtSPL8             <---------AHL20(2)              --------->ANAC58      ----------->GT1 --- ------->AtSPL3            --------->AHL20(2)               --------->ANAC58     --------------->AtSPL8 ------------->AGL15----------->GT1 <---------ARR11(3)   <---------REM1(2) --------->TOE2(3) -------- -->TOE1(1) --------->YAB1 <---------AHL20(2)<-----------GT1--------->ANAC46     <---------------AtSPL8   actatttttattaattgtaaatttgttaaataaatggagattttttttaactacaagtctacaagcatgagtggtaatctaaaatggtacaattttttaa  1167300       --------->AHL20(1)       --------->AHL20(2)       <---------AHL20(2)      --------->AHL20(2) ----->HAHB4                                                           <-----------GT1 --->YAB1 --------->AHL20(2)                                    --------->AHL20(2) ---AHL20(2)                                                    <---------AHL20(2)           <------- --AHL20(2)                                 --------->AHL20(2)  --------->AHL20(1)      --------->DAG2 ------>YAB1        <---------YAB1  ----------->GT1 XXXXXXXXXXXXXXXXXXXX>MIR1886.1     ---------->DOF2 ->AHL20(2)<---------AHL20(2)       <---------ANAC55(2)   ----------->GT1----------------->AGL1   taatacaaaaaaattaatggttatgaaataatacaaatatgtaaaaaaaaatgaagagaagcgaaataaaatataaccagaatgggagaaaaagtattat  1167400                                                                   --------->DEAR3(1)                                                                  <------NtERF2                                                                 ------>NtERF2                                                                 <---------At4g35610                                                                 --------->LBD16                                                                --------->ATERF1(2)                                                          --------->ATHB51                                                          --------->ATHB12                                                          <--------ATHB1                                                          -------->HAHB4                                                          <---------ICU4    ------>ZmHOX2a(2)                                                          --------->YAB1   <------ZmHOX2a(2)                                                         <---------ATHB51 --------->ARR14(2)                                                         <---------YAB1   <---------ARR11(3)                                                         --------->ICU4   --------->ARR11(3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                       --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                      <---------AHL20(2)  <---------ARR14(2)                          --------->AHL20(1)          <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          --------->AHL20(2)         --------->AHL20(2)   --------->AGP1            x                      <---------AHL20(2)             <---------AHL20(1)  <---------GLK1(1)        xxx                     <---------YAB1                  --------->AHL20(1) ----------->ARR10       <xxxx                 <---------AHL20(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxx                 --------->AHL20(1)            --------->ANAC58 <---------ATERF1(2)             xxxxx            --------->AHL20(2)  --------->At4g35610 --------->YAB1xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxx          ----------->GT1 <---------AHL20(2)   --------->ANAC58 --------->DEAR3(1)            xxxxxxx    <----------DOF2 <---------AHL20(2)    ----------->HVH21    <---------RAP2.6(2)         xxxxxxxxxx --YAB1 ---------->DOF2   <---------AHL20(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxx   acatcgctttcaaagttaatatttttattttattatctgaagaagtgactcgaaatataataattgccgccgatgagatctgttctcttgtttcaattgt  1167500  Previous    Next  AGI:  At2g03820.1    Description:  nonsense-mediated mRNA decay NMD3 family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO38732.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60703.1); contains InterPro domain NMD3 (InterPro:IPR007064) Range:  from: 1164954    to: 1167026    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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