Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <----------DOF2                <----------DOF2                                         <------ZmHOX2a(2)             ------>ZmHOX2a(1)                                         --------->ARR11(3)            <---------ALFIN1          --------->GLK1(2)                <---------ARR11(3)          <---------ATERF1(1)        <---------GLK1(2)             ---------->DOF2                 <-    ---------->DOF2   --------->TOE2(3)                      ----------->RAV1(1)  --------->MYB52(2)   accagataaagcctcctcctttattctcaattcgctatagaatctattacaaaacccaagttgcaacatgaaagatcatttctttagttgtctaaaccta  1153900                                          --------->YAB1            <------ZmHOX2a(1)                                     <-------TEIL                 --------->LBD16       <---------ARR14(2)             <------ZmHOX2a(1) ---------->DOF2                   <-----------RAV1(2)    --------->ARR14(2)         ---------->DOF2    --------->ANAC58                     <---------LBD16       <------ZmHOX2a(1)  --------->TOE2(3)         --------->ANAC58         --------->MYB52(1)             --------->At4g35610  <---------MYB59        ----------->HVH21<---------ICU4----------->GT1          --------->At4g35610 ----------GT1           ----------->TGA1<---------ATHB12       --------->TOE1(2)<---------At4g35610   taaaccttacttaaaggactcaatcccatgacgcaaaggttcaatctttataaacaaacagataaacccaggagaaacaatggagcagaggaaacactta  1154000                                                                                 ------>MYB83                                                <---------ARR14(2)               ------>MYB46(1)                                        --------->ATHB12                    <-----------GT1                               --------->ANAC58 --------->ARR14(2)       --------->TOE2(3)                 --------->At4g35610 <----------DOF2                  <----------DOF2        <-------        <---------TOE2(3)      --------->ANAC58<------ZmHOX2a(1)   <---------TOE1(2)         --------  --------->ARR11(3)         ---------->DOF2 <---------TOE2(3)    ------>ZmHOX2a(1)       --------->ANAC46   cgaagttattgagataatcagcgtaagtagagaaagcatctttcattgaggattcagtactcatcgtcctagctttcttaaccaaatgttcaacaccact  1154100                                                                 --------->CCA1(2)                                                                <---------ARR11(3)                                                        --------->ANAC58                                                        --------->ANAC58                                       --------->ZAT6 ---------->DOF2                                    <---------ICU4 --------->ANAC46                                    --------->YAB1 --------->ANAC58                            <---------MYB52(1)   --------->AtMYB61                            <------                          <---------ICU4         ----------->RAV1(1)           <---------ANAC58 --ALFIN1             --------->MYB46(3)   ---------->DOF2      --------->ARR11(3)  --------->REM1(2) ->AtMYB61       --------->AtMYB61 <---------ATHB12--------->ANAC58            <---------ANAC58   ctctgcaactacacaaacaccaaaaccatcgttactaatcaacactaaagaccacacaaagcaatagatatatgtagaagtgagtgtgtatacatacttt  1154200                                                           --------->At4g35610          *TSS                                                          --------->DEAR3(1)           <---------GLK1(1)                <---------AHL20(2)                     --------->ANAC58                --------->GLK1(1)          <---------TOE2(3)          ---------->DOF2   --------->ANAC58       --------->At4g35610 ----DOF2 <---------TOE1(3)       --------->YAB1      --------->SPL7         <---------ARR11(3)   gatggagtctctgaggttttaatttgggagccataagcataaaggctactctttggaacgccgatgaagaacaactcaacatctgtctgatttctccgat  1154300                                                                                              xxxxxxx                                                                                              <------                                                                                         <---------ZAT14                                                                                         --------->ZAT14                                                                                        <---------REM1(1)                                                                                     --------->ALFIN1                                                                                     <---------AtMYB61                                                                                    xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                   <---------ANAC46                                                                                  xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  *TSS  <---------ANAC46                                                                                  xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                --------->ALFIN1                                           ----------->GT1                    --------->At4g35610                                         ---------->DOF2                      <---------At4g35610                         --------->HSFB2a(2)  --------->AHL20(2)            <-----------RAV1(2)  xxxx                         <---------HSFB2a(2)----------->GT1               <-----------HVH21<---------ANAC46               ----------->GT1  <----------DOF2                      <------ZmHOX2a(1)<---------ANAC46   gctcactcgaagcccaaaggtttatttcgcgatgctttagtttgaaagttaaatattaaacgagagaataaggagacatcaggtgctgtggtgtagtggt  1154400                                             <---------ZAT2                                             <---------At4g35610                                             <------NtERF2                                       ------>ZmHOX2a(1)                                       --------->LBD16                                      --------->TOE1(2)                                     ----------->RAV1(2)                                     ======================RAV                                     xxxxxxxxxxxxxxxx>smallRNA(s)                       <---------ARR11(3)    --------->At4g35610                       --------->ARR11(3)   <---------ATERF1(1)               --------->ANAC58     <------ZmHOX2a(2)               --------->ANAC46     =====================================HOX2a_HOX2a               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->ANAC55(1)  xxxxxxxxxxxxxxxx>smallRNA(s)               --------->ANAC58    xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ANAC55(2)--------->DAG2xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxx>smallRNA(s) ---MYB46(3)<---------REM1(2) xxxxxxxxxxxxxxxx>smallRNA(s) >smallRNA(se3)--------->AtLEC2 xxxxxxxxxxxxxxxx>smallRNA(s) x>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(le3) xxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxx>smallRNA(le3) xxx>smallRNA(se3)  xxxxxxxxxxxxxxx>smallRNA(le3) xx>smallRNA(fl3)   xxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(si3)                      <---------WOX13(1) x>smallRNA(le3)    xxxxxxxxxxxxxxxxx>smallRNA(se3)                   --------->ATHB12 xx>smallRNA(i2)    xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------WOX13(1) x>smallRNA(se3)xxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------YAB1                  <--- xx>smallRNA(si3)  ---------->DOF2 <---------ARR14(2)          --------->YAB1           <---------REM1(2) xxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s) ----------->RAV1(1)<------ZmHOX2a(1) <-----------GT1<- xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)--------->ICU4 <-------TEIL<---------ALFIN1   tatcacgtttgccttacacgcaaaaggtctccagttcgatcctgggcagcaccagttttttgtaattaggattgattgattcattttttctccacggttt  1154500                                                   ------>ZmHOX2a(1)                                                  <---------------AGL15                           --------->ZAT6         <---------MYB59   <---------HSFB2a(2)                          <---------At5g28300     --------------->AGL15                         <-----------GT1         ----------------->AG                 <--------------          --------->AHL20(2)                     ----------------->AGL1             <---------AHL20(2)          <---------AHL20(2)                     <-----------------AGL1       XXXXXXXXXXXXXXXXXXXX>MIR778  ----------->GT1----------->GT1             <----------DOF2        --------->HSFB2a(2) ------YAB1     <---------TOE1(3)         <-----------GT1<---------YAB1     ------>MYB83       ------ --------AtLEC2 <---------TOE2(3)     <------------------------ANAC81       ------>MYB46(1)   -------   tgaatggtatttttaattaaggttaatttacagtatattgtttttttcttttcctaattttgaatgtgttctacaacctagcttattttatgtacaaaaa  1154600                                   ------>MYB46(1)                  <---------ATHB12 ------>MYB83       <---------------AtSPL8 >>>>>>>>>>WRKY38       --------->DAG2         >>>>>>>>>>WRKY26      ---------->DOF2         >>>>>>>>>>WRKY43           <--------P     <---------AHL20(1) -AtSPL8        --------->WOX13(1)----------->RAV1(1) <---------YAB1    --------->AHL20(1) --->DAG2  <-------TEIL    <---------At4g35610      --------->YAB1      --------->ARR11(3) --->DOF2  --------->ZAT18 --------->At4g35610     <---------YAB1     --------->GLK1(2)             -   gtgttcaataaagtgcataaatcaatttgagatgaccaacattcttgtaaactatgatggtagatgttagagaatattttgaactaattggatttgagtt  1154700                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <---------YAB1                    --------->AHL20(2)                    --------->YAB1                  <---------ANAC46                    -------->HAHB4                 <---------TOE2(3)                   --------->ICU4                 <-----------GT1                   <---------YAB1            <------MYB83                   ----------->GT1           <---------MYB46(3)                 <---------ICU4              <------MYB46(1) --------->YAB1    --------->ATHB12                 --------->YAB1          <-----------RAV1(1) ----------->GT1  <---------YAB1 --------->YAB1 --------->ICU4          --------->ICU4  <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) -------->ZAT6--------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ------>ZmHOX2a(1)          <xxx   taatactaatttgatttcataatgataaatgagcatttagtaattgttggttttacgtttaaatggtaattcctatatagatgattagttttgttccatg  1154800  Previous    Next  AGI:  At2g03780.1    Description:  translin family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO15330.1); contains InterPro domain Translin, C-terminal; (InterPro:IPR016069); contains InterPro domain Translin; (InterPro:IPR002848); contains InterPro domain Translin, N-terminal; (InterPro:IPR016068) Range:  from: 1152464    to: 1154288    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g03790.1    Description:  pre-tRNA. tRNA-Val (anticodon: TAC) Range:  from: 1154382    to: 1154454    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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