Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------TOE1(3)                               --------------->AGL15                               <---------------AGL15                           --------------->AGL15                              <-----------------AGL3                           <---------------AGL15        <------ZmHOX2a(1)     =================================================================MADS_MADS ------ARR14(2)          --------->KAN4(2)                        <----------DOF2           <-------- ------ARR11(3)        --------->ARR14(2)    <---------YAB1    --------->GLK1(2)            <-------- ----->ARR11(3)        <---------ARR14(2)   <----------DOF2   <---------GLK1(2)<----------DOF2 <----- ----->ARR14(2)   ----------->GT1    <---------TOE2(3) <---------YAB1       <-----------GT1 ---------   atattagataggacttggacttgtgaatatgctctatttaaggcatctttataggttatatttagaatctttttcttatttcttttttgagcatattatt  1128900                       ---------->DOF2                   ---------->DOF2                 <---------YAB1               --------->At4g35610             ------>ZmHOX2a(2)            --------->CCA1(2)                                <----------DOF2            <------ZmHOX2a(2)                        --------->ICU4           --------->AGP1--------->ANAC58       <---------ANAC46           <---------ARR11(3)          <---------AHL20(1)  <---------YAB1           --------->ARR11(3)          --------->AHL20(1) <---------ARR11(3) -AHL20(2) <---------ARR14(2)       --------->AHL20(2)    --------->ARR11(3)                   ------ -YAB1     <---------AGP1--------->ANAC58 <---------AHL20(2) --------->TOE2(3)         ---------->DOF2 ----YAB1----------->ARR10  --------->WOX13(1)  ----------->GT1                 <------ZmHOX2a(1)  <- >AHL20(2) --------->ARR14(2)       <---------AHL20(2)<---------ICU4       <---------ATHB12   -------   aaactatggactagatctgatgaaagaaagcaatctatttatatattatggtgtaaatattatctttaaaaaatccaatggaggagagtgaaagagaaaa  1129000                                                    ------>ZmHOX2a(1)                                         =================================HOX2a_HOX2a                                         ------>ZmHOX2a(2)                                         ==================HOX2a_HOX2a                                        ==================================HOX2a_HOX2a                                        <------ZmHOX2a(2)                                        ===================HOX2a_HOX2a                                       <-----------ARR10                                       <---------AGP1<---------------------WRI1                                       <---------ARR11(3)                                       --------->ARR11(3)                                       <---------ARR14(3)                                       <---------ARR14(2)                                       --------->ARR14(2)          <------ZmHOX2a(1)                                       --------->ARR14(3) --------->DAG2                                      --------->RVE1(1)  ---------->DOF2      <---------AHL20(2) --->DAG2                    ----------->GT1  --------->ZAT6   <---------TOE2(1) --------REM1(1)   <---------ZAT14 ---------->DOF2 --------->TOE2(3)         <---------YAB1        -- --->DOF2<---------YAB1    ----------->GT1  <-----------GT1    <---------TOE1(1)               ------   gttgaagcattttgtttggactatagagagagagaaaaaaagatcttaactctccttagaaaagtactaggaatcaatttttattttctgcaaaaacaaa  1129100                        <---------ARR11(3)                                                         --                        --------->ARR11(3)                                                         <-                        --------->AHL20(1)                                                       ----                      <---------AHL20(1)                                                     <-------                      --------->AHL20(1)                                                  <---------AHL20(1)                   --------->AHL20(2)                                                     --------->AHL20(2)                   <---------AHL20(2)                                                     <---------AHL20(2)                --------->YAB1                                      --------->YAB1        --------->AHL20(1)             --------->YAB1    ======================================================================            <---------AHL20(2) --------------->AGL15     ------->TEIL                   <---------AHL20(1)            --------->AHL20(2) <---------------AGL15  ----------->GT1                 <---------YAB1<   ---------->DOF2 --------->YAB1          --------->ZAT6<-----------GT1 <---------DAG2--------->YAB1 --------->GT1  <---------ICU4----------------->AGL1 <---------TOE2(3)   <----------DOF2<---------AHL20(2) ---->DOF2 --------->AHL20(2) <---------LBD16    --------->YAB1 --------->ANAC46    --------->YAB1<--   agtgtaaaagaaaattaataataatatatattccctgatgaagtaagactaaaataatgtaactacacaaaaatactttttagaatttataatattttat  1129200          ---------->DOF2      <---------------AGL15 ------->AHL20(2) --------AHL20(2)          <------------CBF                                                  -------- ----->YAB1              <---------TOE2(3)                          <---------ANAC58     ------>MYB46(1) --AHL20(2)    ---------->DOF2----------->GT1                       <---------ANAC58     ------>MYB83 =====================MADS_MADS  --------->CCA1(2)               *TSS                   ----------->RAV1(1) ---------AHL20(2)       <---------YAB1            <---------AHL20(2)                  --------->AtMYB61 -------AHL20(2)        XXXXXXXXXXXXXXXXXXXX>MIR844--------->AHL20(2)                 --------->MYB46(3)   attaatttttaaaaaaggaaagttgataagattggatataagtttggaagcatttatttggccaagaatggcttagcatctctgcaaaaccaacacaaag  1129300                                                            --------->AtMYB61                                                            <---------ALFIN1                                                            --------->ZAT6                <---------ALFIN1                                                         --------->DEAR3(1)               --------->DEAR3(1)                                                         xxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->AtMYB61                                                         --------->AtMYB61               --------->MYB46(3)                                                         <---------ALFIN1              --------->AtMYB61                                                        --------->MYB46(3)             --------->DEAR3(1)                                                --------->PCF2                         <---------ALFIN1                                   --------->TOE1(3)  --------->DEAR3(1)            --------->AtMYB61                                  ----------->RAV1(2) --------->AtMYB61             --------->DEAR3(1)                                 ------->TEIL  <-----------TCP11(1)                 <---------ALFIN1-                                 --------->GLK1(2)    <---------ALFIN1           --------->ANAC46   <                                --------->ARR11(3)   <---------MYB55(2)          <---------ALFIN1  --                                --------->ARR14(2)   --------->MYB46(3)     ------>ZmHOX2a(1)     <--                                <---------ARR14(2) <---------ALFIN1  <---------GLK1(2)--------->MYB46(3) <---------GLK1(2)       ---------->DOF2     <---------MYB52(1)   --------->TOE2(3)--------->MYB46(3) -->DOF2         --------->At4g35610        --------->ZAT2 --------->MYB46(3)  ------>ZmHOX2a(1)<----   ctatattctcttaaaaatcagttcaacaaaagaagaacctgaacacagttggcccaccaccaccactaccacaatctcctcctccaccaccaccacctag  1129400                                                    --------->AGP1                                                    <---------ARR14(2)                                                    <---------ARR11(3)                                                    <---------AGP1                                                    --------->ARR14(2)                                             <----------ID1                                             <----------ARF1                                        =====================HOX2a_HOX2a                                        ------>ZmHOX2a(1)            <---------REM1(2)  --------->LBD16                       <----------DOF2          --------->ANAC46                ---- -------->At4g35610                     ====================HOX2a_HOX2a                         ----- ---------LBD16                     <---------ARR14(2)       <-----------GT1                 -------- ------->MYB52(1)                   --------->GLK1(2)<------ZmHOX2a(2)                 <----------DOF2 -------WRKY38(1)                   --------->ARR14(2)------>ZmHOX2a(2)     <---------AHL20(2)  <---- -------HVH21                      <---------GLK1(2)--------->ARR11(3)<---------ALFIN1 <---------DAG2   tcaccggaaaccaattcatgccctagattaagaaccagaatccttttgagacaagatctatatatacactctacacatttacttatacactttatctaga  1129500                                               <---------ZAT6                                             ----------->GT1                                        <------MYB46(1)                               <---------ANAC58                                        <------MYB83                                  <---------ANAC46     --------->ALFIN1             <---------ANAC55(1)                      <---------ANAC46     <---------ANAC58             --------->ANAC55(2)                      <------MYB46(1)     <---------ANAC46             <---------ANAC55(2)                      <------MYB83     <---------ANAC58             <---------ANAC46                        --------->MYB59 ----->CCA1(2)                    <---------ANAC58                      <---------MYB52(1) ---->ARR11(3)          <----------DOF2 <---------MYB46(3)             <-------GAMYB  <---------ANAC58 ------->AGL15        <-------TEIL<---------ANAC58          <------ZmHOX2a(1)   <---------AtMYB61 -----ARR11(3)    <---------TOE2(3)   <--------P     ---------->DOF2   <---------At4g35610          -   tatagatgtgtgtgtgtataaaggttctttttcattacttgttggtttagtgataaaaaggaggagagttttcagttgggttttggtttcttggtgagag  1129600                                                                          <----------DOF2                                                                          <---------DAG2                                                                       <-----------GT1                                                                    ----------->GT1                                                          <------ZmHOX2a(2)                                             <---------ARR14(2)     --------->ANAC58                                            =====================HOX2a_HOX2a              <------ZmHOX2a(1)    <---------At4g35610   --------->ARR11(3)      ---------->DOF2              --------->At4g35610   <---------ARR11(3)     ---------->DOF2 ---------->GT1            ---------->DOF2  <------ZmHOX2a(1)       --------->ANAC58              ---   aagagagaaaaagagaggatgggaagagggaaagttgagctgaagaggatagagaacaagatcaatagacaagttacttttgcaaagagaagaaatggtt  1129700                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                           --------->ATERF1(1)                                                                                          --------->ZAT2                                                                                          <---------At4g35610                                                                          <---------ARR11(3)---------                                                                        --------->ANAC58  <---------ZAT2                --------->At4g35610                                     --------->ANAC58  --------->At4g35610         <---------ANAC58  <----------DOF2                       ------->GAMYB         <---------At4g35610         <---------ANAC58  ------>ZmHOX2a(1)                   <---------At5g28300     --------->At4g35610 ------>At4g35610 <----------DOF2  <---------At4g35610       ----------->HVH21    <---------ARR14(2)   tgctcaagaaggcttatgagctttctgtcctttgtgatgctgagattgctcttctcattttctctaaccgtggcaagctctacgaattctgcagcagccc  1129800  Previous    Next  AGI:  At2g03710.1    Description:  SEP4 (SEPALLATA4); DNA binding / transcription factor. Identical to Agamous-like MADS-box protein AGL3 (AGL3) [Arabidopsis Thaliana] (GB:P29383;GB:O04729;GB:Q41252;GB:Q7XJL0;GB:Q8VZR9); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to MADS-box protein AGL3-a [Brassica oleracea var. botrytis] (GB:CAD48302.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 1129265    to: 1131835    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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