Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->REM1(1)                    --------->ANAC46          <---------At4g35610                --------->DAG2                --------->AtMYB61             --------->At4g35610               ---------->DOF2                ----------->RAV1(1)      <---------ANAC58               ----------->GT1               --------->MYB46(3)        <---------ANAC58             ---------->DOF2 ------HSFB2a(2)<---------ALFIN1        --------->HSFC1(2)        --------->At4g35610 ----->HSFB2a(2)------->GAMYB           <---------HSFC1(2)        <---------At4g35610             <--   tggaaactattacttcaaccacactaaacatgaattactagtagcttctgctacatgagacttgaaacagctcaaagttaaaaaaagttgctaattttgt  1120400                                                                           <-------TEIL                                                                         <---------GLK1(2)                                                                   --------->ATHB12                                                                   <---------ICU4                                                                  --------->ICU4                                                                --------->ATHB12                                                                --------->YAB1                                                                <---------ICU4                              ---------->DOF2                   -------->HAHB4                  --------->AHL20(1)                   --------->RAP2.6(3)--------->ARR14(1)                  <---------ARR11(3)                  --------->MYB52(1) --------->ARR11(1)                  <---------AHL20(1)                <---------AHL20(2)<---------------------WRI1                  --------->ARR11(3)             --------->YAB1<---------ATHB12      <---------ICU4 <----------DOF2            <---------AHL20(2)<---------YAB1   --------->YAB1--------->CCA1(1)          --------->AHL20(2) --------->ICU4             --------->ATHB12 -------AHL20(2) --------->RVE1(1)          <---------AHL20(2) <---------YAB1       --------->YAB1   tttattcataaataccaaaatatcttttgtttcaaagttcaaatttttaaataataaaacggctaatgattattagattcgaacaatgacaaagattggc  1120500                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                              --------->DEAR3(1)                                                <----                           --------->AtMYB61             <---------ICU4                         -----                           <---------ALFIN1              --------->AHL20(2)               <---------DAG2                      --------->AtMYB61                  --------->YAB1                   <----------DOF2                    ------->TEIL                         <--------ATHB1                <-----------GT1                 <---------MYB52(2)                      --------->ATHB51              <---------AHL20(2)                 --------->ANAC58                       --------->ICU4             --------->AHL20(2)                 --------->ANAC58                       <---------ATHB12           <---------AHL20(2)                 --------->ANAC46<---------ANAC46       <---------ATHB51           --------->AHL20(1)            --------->PCF2 --------->DEAR3(1) ---------->DOF2                      <---------AHL20(1)       --------->ATHB12   --------->MYB46(3)<----------DOF2   <-----------GT1   <---------ICU4<------   cattacacatgaatggcccacgaacctcaccaccgtcgtgaaatttctttaagcaccaataatttcactggttatctcttactaattaattactttttac  1120600                    --------->YAB1                    <--------ATHB1                    --------->ATHB51                                         --------->AHL20(2)                    <---------ICU4                                           <---------AHL20(2) -----ANAC58        <--------HAHB4                                           --------->AHL20(1) -----ANAC55(2)    <---------ATHB51                         <---------At4g35610                    <- -----ANAC55(1)    <---------ATHB12                         --------->At4g35610             --------- -----ANAC58       --------->ICU4               --------->ARR14(2)           <---------AHL20(1)    -- -----ANAC46       --------->AHL20(2)           <---------ARR14(2)          --------->AHL20(2) ------ ---->ANAC55(2)  --------->YAB1             <-----------------AG---------->DOF2           <---------YAB1 -----GT1   <---------ATHB12                <-----------------AGL1   ----------->GT1 ---------->ID1<-   gtgttctaatccaaatcaacaataattatctgatatttcttcataaaccggttttggaatttagctgaaagatgtgaattttattttgtcttattaatca  1120700                                         --------->ZAT6                                      ----------->HVH21                                 <---------ARR14(2)                            <---------ANAC58                                 --------->ARR14(2)                ----------->TBP --------AHL20(1)              --------->LBD16                     <---------YAB1    --------->At4g35610 >WOX13(1)               --------->AHL20(2)<---------MYB52(2)      --------->AHL20(2)<---------At4g35610 ------->AHL20(2)     --------->WOX13(1)<<<<<<<GRF7           <---------At4g35610 <---------At4g35610 --->YAB1      <---------YAB1<---------LBD16        --------->MYB52(1)         <---------ANAC58  *TSS --------AHL20(2)   ------------>CBF----------->RAV1(2) <-----------HVH21   --------->ALFIN1   <-----   aaaaatttgaaatcgttttgatttcaattaaaccggaaccctgacactaacaaaaaccggtctgagcttataaatagagtggctcgctgatgactcagtt  1120800                                                              --------->MYB46(3)                                                    ----------->HVH21                                                   ------>ZmHOX2a(2)                                                  --------->CCA1(2)                                                  <------ZmHOX2a(2)                                                 --------->AGP1                                                 --------->ARR11(3)         --------->ARR14(2)                      <---------ARR11(3)         <XXXXXXXXXXXXXXXXXXXXMIR3933            --------->ARR14(2)       --------->LBD16                           <---------AGP1  <---------At4g35610                            <---------ARR14(2)  --------->At4g35610                         <---------HSFB2a(2)                                   -  <---------ZAT2                              --------->HSFC1(1)      --------->DAG2              ---  --------->ZAT2   <-----------GT1            --------->HSFB2a(2)   ---------->DOF2               === ----MYB52(1)    <----------DOF2         <<<<<<<<<TBF1  ------>ZmHOX2a(2)  --------->MYB52(2)     ===   agtcagctccgagtctgcgttttacttcttctccttgagtttcttcttctagatctgatcgcgaatcaccaaaaggtttgtttcttaacccctaaaattc  1120900                                                          <---------TOE1(2)                <---------ANAC58                         ------>ZmHOX2a(1)           <------------------------ANAC81               =========================HOX2a_HOX2a        <----------DOF2                             <---------GLK1(2)     ------>ZmHOX2a(2)                            <---------TOE2(2)                     --------->YAB1    <------ZmHOX2a(2)                             <---------TOE1(2)         --------->YAB1   --------->ARR14(2)                          ===============================HOX2a_HOX2a   <---------ARR14(2)                          =================HOX2a_HOX2a<------ZmHOX2a(2) -------->HSFB2a(2)                            ------>ZmHOX2a(2)           <---------ATHB12 --->ZmHOX2a(1) <---------ANAC58             --------->ARR11(3)        ------>ZmHOX2a(1)<---------ICU4 ===========HOX2a_HOX2a                      <---------ARR11(3) <---------YAB1<---------YAB1 ==========HOX2a_HOX2a                     --------->MYB59<---------TOE2(2)==========================   ctccagatcgctttgatttcgtttctctgatgtcttagacgaagttagatcgtagattcctatgttttgattcctcgatcatgcttcgaattatggtgtt  1121000                                <---------ARR14(2)                                    ------>ZmHOX2a(2)                                --------->ARR14(2)                                   <------ZmHOX2a(2)                  --------->CCA1(2)                                                  --------->CCA1(2)                 --------->ARR14(2)                                                 <---------ARR14(2)                 <---------ARR14(2)            <------ZmHOX2a(1)                    --------->ARR11(3)        <---------DAG2          <---------GLK1(2)                                   <---------AGP1---    ------>ZmHOX2a(1)<------MYB83           <---------LBD16   <---------MYB46(3)    --------->AGP1<--   --------->TOE2(3) <------MYB46(1)     <---------ARR14(2)  <---------YAB1         <---------ARR11(3) ==========HOX2a_HOX2a      <---------LBD16<-------TEIL    ----------->GT1          --------->ARR14(2)   tttatcctcaatttttggagatttggtttctacggattttgtagattcaggaatttagaaatggtgattcgatttcaatggttttagatctgattcagtc  1121100                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                       <---------TOE2(3)                                                                      --------->HSFB2a(2)      ------                                             ---------->ID1           --------->HSFC1(1)       <-----                                           <---------ANAC46           <---------HSFC1(1)       <----- ------>ZAT14                              <---------ANAC58           <---------HSFB2a(2)    -------- -------ZAT14                              <---------ANAC58 ------>NtERF2          <----------DOF2   ttcactcttgttccactattttgaaaattggctaaaaactaggtttcgtcgtctaattctcccgacgttcttcgagaaatgtgaactttgaggtgaagat  1121200   <---------MYB52(1) <---------ANAC58 <---------ANAC58 <---------ANAC46            <---------TOE2(3) ----ARR14(3)             <---------WOX13(1) --->ARR14(3)           --------->ATHB51 ----GLK1(2)           <---------AHL20(2)                                                         <-- --->ARR11(3)          <---------YAB1                                                             --- ----ARR14(2)      ----------->GT1                                  --------->YAB1                <-- ----ARR11(3)      <---------ANAC46         <---------YAB1  <---------At4g35610                   --- --->ARR10 <-----------RAV1(1)<---------bZIP60(2)           --------->At4g35610           <----------DOF2   tttgcgttagcatatgtggttttgtataattgacgttgctactattctgattgtgaattttaagcagcattcacaattgaattgagtcttcactttgttc  1121300  Previous    Next  AGI:  At2g03670.1    Description:  CDC48B; ATPase. Identical to Cell division control protein 48 homolog B (CDC48B) [Arabidopsis Thaliana] (GB:Q9ZPR1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65954.1); similar to AAA ATPase, central region [Medicago truncatula] (GB:ABN09178.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Peptidase S16, Range:  from: 1117504    to: 1120433    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g03680.1    Description:  SPR1 (SPIRAL1). similar to SP1L1 (SPIRAL1-LIKE1) [Arabidopsis thaliana] (TAIR:AT1G26355.1); similar to spiral1 [Brassica juncea] (GB:ABX10748.1) Range:  from: 1120797    to: 1122052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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