Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->ARR14(2)                                                               <---------ARR14(2)                                                              <---------GLK1(1)                                                     <-------MYC3                                                     ------->MYC3                                                  <---------ANAC46                                                  <---------ANAC58                                                  <---------ANAC58 ------>ZmHOX2a(1)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   *TSS ---------->DOF2       --------->GLK1(1)                             --------->At4g35610 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>DOF2                 ----------->GT1  <XXXXXXXXXXXXXXXXXXXXMIR398B/C -->ANAC58                 <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -->ANAC58              <-----------RAV1(2)  --------->ALFIN1 <---------CCA1(2) ->DOF2               ----------->RAV1(1)    <XXXXXXXXXXXXXXXXXXXXMIR398A   aaagtatggagaagaagagaagaacaacaggaggtgaaatttcaaaggagtggcatgtgaacacatatcctatggtttcttcaaatttccattgaaacca  1041000                             ------->TEIL                 ----------->HVH21                <-----------HVH21               <---------At4g35610               --------->At4g35610               --------->TGA1a     ----------->RAV1(2)               ====================bZIP_DOF           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   --------->AHL20(2)         XXXXXXXXXXXXXXXXXXXX>MIR398A                         <---------AHL20(2)        XXXXXXXXXXXXXXXXXXXX>MIR398B/C                        <---------AHL20(1)                    <        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------DAG2     --------->YAB1      <--------       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-----------GT1  <---------AHL20(2)     <---------At4g35610     <---------ANAC46   <----------DOF2         <-----------GT1<---------AHL20(2)       <---------ZAT18   ttgagttttgtgttctcaggtcacccctttgaatctcccctgttccattttttcaccttactaattttttttattcatactctaaatttgtgagcttttg  1041100                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                         <---------YAB1                                                        <---------AHL20(1)                                                        <---------AHL20(2)                                                        --------->AHL20(2)                                        <---------YAB1 --------->YAB1        ------->TEIL   ---------                             <---------AHL20(2)       <---------YAB1         <---------ARR14(2)                          <---------ARR11(3)         ================================================    <----------DOF2       --------->ARR11(3)         <-----------------AGL3  --------->ARR14(2) ----------DOF2   <---------YAB1   <----------DOF2  --------->YAB1--------->TOE2(3)     <----------ID1 --DOF2           --------->ICU4<---------YAB1     --------->AHL20(2)       <---------CCA1(2)       <   tgctttctttttttttggtcataagtgagattttatgcttttttgattacacatttattataatggaacctctattttgtatctgaaacagagacaaagc  1041200                                                                 <---------YAB1                     --------->TOE2(3)                           <---------ANAC55(2)                     --------->TOE1(3)                     <---------AHL20(1)      <---------ARR14(2)                                   --------->AHL20(1)      --------->ARR14(2)                                   --------->AHL20(2)                     ---      <---------ARR11(3)       <---------AHL20(2)          <---------AHL20(2)    <---------AHL20(2)     <---------CCA1(2)         --------->AHL20(2) --------->HSFB2a(2)     ----------->HVH21   ------- ->DOF2   ------>ZmHOX2a(1)   --------->AHL20(2)  <---------HSFB2a(2) --------->ATHB12   <--------P ==================================================================MADS_MADS     --------->AHL20(2) -----------GT1   <-----------GT1  --------->YAB1----------------->AG<---------YAB1      <---------WOX13(1)   attaaccatatcctacatatataccttaacaaattaatgacaactctggtttccaaaacaataaattatgtatgatttgacaattaaactggttgataaa  1041300                            --------->AHL20(2)                   <---------ICU4                <---------ICU4               <---------ATHB51               --------->ICU4                 >>>>>>>>>RAP2.2                                <------MYB83           --------->AHL20(2)  <---------AHL20(1)                                            <------MYB46(1) -------->GT1  <---------AHL20(2)          <---------CCA1(2)              ---------->DOF2   <-------- -->AHL20(2)   --------->AHL20(2)      <-----------TBP               ----------->GT1 *TSS   ---------   atgtaaatttggaataaataattagttccataatatatgttttttatatctaaaatagcatagtcttttgaaggtgaaaagtcataaatcaggtttggtt  1041400                                                                                                   <-                                                                                                   --                                                                                        <----------DOF2                                                                                        <---------DAG2                                                                                    --------->WRKY12                  --------->WOX13(1)                                                --------->WRKY45-              <---------ICU4                 --------->AtMYB61                     --------->DOF5.7(2)        --------->bZIP60(1)            --------->YAB1                ----------->GT1--------->WRKY38(1) -AtMYB61     --------->YAB1           <---------ICU4        ------>MYB46(1)   --------->MYB52(1) --- >MYB59 <---------bZIP60(1)           --------->ICU4         ------>MYB83    <---------MYB52(2)  ----   tcaaacaatgacttcataatcactcaaaaaactcttcttaattatcaccaaaaccccaaaaccaactaaaactgaaaaaacaaacgttgactttttgact  1041500                               <------NtERF2                              ------>NtERF2                              --------->ABI4(1)                             --------->RRTF1(3)                             --------->RAP2.3(3)                             --------->DEAR3(1)                             --------->RAP2.3(2)                            --------->ERF1              --------->At5g28300              --------->LBD16<---------DEAR3(1)             --------->RAP2.3(2)             --------->RAP2.6(2)<---------ANAC46           ------>NtERF2    --------->DEAR4(2)           --------->LBD16  --------->RAP2.3(1)          --------->DEAR3(1)--------->ATERF1(1)          --------->ANAC46  --------->ORA47(2)        =========================HOX2a_HOX2a     ------>MYB46(1)       <---------ATERF1(1)     ------>MYB83      <---------ICU4   --------->AtMYB61  <---------YAB1   <---------ALFIN1   --------->ICU4                                               --------->ANAC46 --------MYB55(2)   --------->YAB1                                                 --------->ANAC58 ------->MYB46(3)   <---------ICU4    <-----------GT1                              --------->ANAC58 ------>GAMYB<---------ANAC46--------->ANAC46             ------>ZmHOX2a(1)      ---------->DOF2 ----->P------>ZmHOX2a(1) ------>ZmHOX2a(2)      <<<<<<<<<TBF1              --------->KAN4(2) ----->MYB52(1)    <---------ATHB12   --------->ZAT6<<<<<<<<<TBF1    ------>ZmHOX2a(1)   aaccaccatcctccgccgtaaatcatgatcgccgccgtttacactctcttcttcttcttcctcttaatctcctctgtttattccaaagccacgatttcaa  1041600                          ------>NtERF2                          ----------->RAV1(1)                   <---------SPL7                         ----------->HVH21                   <---------At5g28300                         --------->DEAR3(1)                 <-----------GT1                         -                         <---------ETT(2)                  --------->MYB46(3)                       <                        --------->RAP2.3(1)           <------NtERF2                               <--                       <---------ATERF1(1)           ------>NtERF2                               ----                      --------->TOE1(2)              <-----------HVH21 ====================HOX2a_HOX2a                     <---------LBD16                --------->DEAR3(1) ------>ZmHOX2a(2)        <----                     ------>ZmHOX2a(2)              <---------ANAC46  =====================HOX2a_HOX2a                    <------ZmHOX2a(2)               <---------DEAR3(1)<------ZmHOX2a(2)         -----                   <---------ARR14(2)             --------->LBD16 --------->SPL7<--------P   --------             ---------->DOF2                      <---------ATERF1(1)--------->ARR14(2)      --------          --------->TOE2(3)                      <---------DEAR3(1)  <---------ARR14(2)      --------          --------->TOE1(3)<------NtERF2        <---------LBD16 <-----------HVH21     --------->GLK1(2)       <---------ALFIN1--------->LBD16          --------->SPL7  --------->ORA47(1)  <------ZmHOX2a(1)    --------->LBD16--------->ARR14(2)         <-----------HVH21--------->DEAR3(1) --------->MYB59----   tctctccccaaaccttaaaccgatccggcgacatagtcgtgatcaaatggtccggcgtcgaatcaccgtccgatctcgactggttaggaatctactcgcc  1041700                                                                --------->LBD16                                                              <---------LBD16                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                      <-------MYC4                                                      ------->PIF5                                                      ------->MYC4                                                      ------->MYC2                                                      ------->MYC3                                                      <-------PIF5                                                      <-------MYC2                                                      <-------MYC3--------->ARR14(2)                                                     <---------TGA1a  <---------GLK1(2)                                  <---------PIF3(3)  --------->ARR14(2)                                 --------->TGA1a -------->LBD16                                      --------->ANAC46 ---------ZAT18                                      <---------O2 <-----------HVH21 ----NtERF2                                          --------->PIF3(3) -->NtERF2                                           --------->O2 <---------ARR14(2) -----ALFIN1                                       <---------ALFIN1                            ------ ---->DEAR3(1)         <---------At4g35610        ---------------->PIF3(2)                  --------- ->ANAC58      <------ZmHOX2a(2)                  --------->DEAR3(1) ----------------------->TaNAC69(2) ->ANAC46=============HOX2a_HOX2a     ------>ZmHOX2a(1)    <---------GLK1(1)           --------->TOE1(3) ->ANAC58------>ZmHOX2a(1)--------->At4g35610     --------->MYB46(3)<---------ANAC46   --------->TOE2(3) ----->MYB52(1)==============================HOX2a_HOX2a   --------->WOX13(1)   <-----------GT1------   accggactctcctcacgatcacttcatcggctacaaattcctctccgattcacccacgtggcaatccgggtcgggttcgatttcacttcccttaaccaat  1041800                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                                                       <------                     <---------ARR14(2)                                                       <------                     <---------AGP1                                                       --------->GLK1(1)                     --------->ARR14(2)                                                  <---------ARR14(2)                     <---------ARR11(3)                                                  --------->ARR14(2)                     <---------ARR11(1)                                                --------->LBD16                     --------->ARR11(3)                                               --------->ANAC58                    <---------CCA1(2)                                           <----------DOF2                   --------->LBD16 <---------MYB59                              ------>ZmHOX2a(1) <--                  <---------HSFB2a(2)                --------->LBD16           --------->TOE2(3)  <--                  --------->HSFB2a(2) <---------ARR14(2)                 ----------------------->TaNAC69(2)                 <---------LBD16  --------->ANAC58  --------->ANAC46    --------->YAB1--------->ANAC58   <------ZmHOX2a(2)<---------ARR14(1)--------->ARR14(2)             --------->YAB1   --------->LBD16 >MYB83  <-----------GT1<----------DOF2   --------->LBD16            <---------ICU4   --------->ANAC46 >MYB46(3)    <----------DOF2     --------->ANAC58  --------->ANAC58--------->ICU4    --------->ANAC55(1) >MYB46(1) <-----------GT1 --------->ATHB12         --------->ANAC58<---------YAB1   <---------LBD16   ctccgatcaaattacactttccggatctttcattggacccaatccgaaataaacccgaaacaccaagaccatgatcacaatcctttacccggaactcgtc  1041900  Previous    Next  AGI:  At2g03445.1    Description:  MIR398A; miRNA Range:  from: 1040935    to: 1041039    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g03450.1    Description:  ATPAP9/PAP9 (purple acid phosphatase 9); acid phosphatase/ protein serine/threonine phosphatase. similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G13900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41881.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70143.1); similar to calcineurin-like phosphoesterase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC15853.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843); contains InterPro domain Purple acid phosphatase-like, N-terminal; (InterPro:IPR008963); contains InterPro domain Purple ac Range:  from: 1041385    to: 1043664    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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