Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <               <---------ANAC55(2)                                        <---------AHL20(2)    -----              <-------TEIL                                   --------->AHL20(2)                 <----           --------->YAB1                                    <---------AHL20(2)--------->AHL20(2)  --          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ------->TEIL           --------->YAB1     <--------  ---------->DOF2                                 <-----------GT1       <---------YAB1      --------- ------>AHL20(2)      <---------YAB1           ----------->GT1      <---------ANAC46       --------->AHL20(2) ----->AHL20(2)--------->ANAC55(2)    ----------->GT1        --------->YAB1    <---------AHL20(2)----   taaaaaaagagaatgatacgtcttattatcgacgcttataatgtaaaaaatgtaacttcttaattatatgtcttataatattaaaatataacatttaatt  1027900    <---------AHL20(2)   <---------AHL20(1)   --------->AHL20(2)   <---------AHL20(2)   --------->AHL20(1) -------->ATHB51 ---------ICU4 -------->AHL20(2)                                                               --------->AHL20(2) ---------AHL20(2)                                                           <---------YAB1 --------ATHB1                       <---------At4g35610                    --------->AHL20(2) ---->AHL20(2)               <---------ANAC58                               <---------AHL20(2) -----AHL20(2)               <---------ANAC58              <-----------RAV1(1)   <---------AHL20(2) ------->ICU4            --------->ALFIN1      <-----------GT1              <---------AHL20(1) -AHL20(2)             <---------ANAC58    --------->AHL20(2)             <---------YAB1           <- >AHL20(2)             <---------ANAC46    <---------AHL20(2)      <-----------GT1           <------- ----->YAB1            <---------ANAC58   --------->AHL20(2) ---------->ID1--------->YAB1   ---------   aataatttatttcaattgacaattggagtgtgcgtttacagctatttatttacaatttgttttgttgttttgccatattataatttatcaaatattaaat  1028000                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                -----                                                                                               <-----                                                                                       --------->At4g35610     <----------ID1                           <---------YAB1                           <---------ZAT2 ---------->DOF2                   --------->CCA1(2)                              <-----------GT1  -- --------ZAT6                     <---------ARR11(3)     <------------CBF <---------ARR11(3)   ------ --AHL20(2)                   ---------->DOF2<-----------TBP            <---------YAB1 --------->ZAT2 >AHL20(2)      ----------->GT1   --------->ARR11(3)  ------------>CBF  --------->ICU4 <---------At4g35610   agtgaaagagacaaaaactagaaaaaacaaacaaaagatatagttttttttatagaatcaattgtttttatgccatgatttttttctccagctcaacatg  1028100                                                                             ----------->TBP               --------->ATHB12                                            <----------DOF2      <---------YAB1                                                      ------>ZmHOX2a(2)   --------->ICU4                                                        <------ZmHOX2a(2) -------->AHL20(2)                                                      <---------ARR11(3) ---------AHL20(2)                                                      --------->AGP1 --------AHL20(2)                                                       --------->ARR11(3) ---->ATHB12  <---------YAB1                                            <---------AGP1 ----YAB1 <---------ARR11(3)                      <---------ANAC58     <---------CCA1(2) ------->AHL20(2)   <---------YAB1                <---------ANAC58 <----------DOF2 --->ICU4 --------->ARR11(3)            <-----------TBP      --------->MYB52(1)   attaaattatgaaatcttgattacgatttgtgattttttgttatatgtagttgcgaaacacatcaacggctttagatctttataagcccatttaaggccc  1028200                                                           <--------P                                                      --------->ABI4(1)                                                      ------>NtERF2                                                     --------->DEAR3(1)                                                     <---------DEAR3(1)                                                     --------->RAP2.3(2)                                                     <---------ATERF1(2)                                                    --------->RAP2.3(1)                                                    --------->DEAR4(2)                                                    --------->ATERF1(1)                                                    --------->ERF1                                                    --------->RRTF1(1)                                                    --------->RAP2.6(1)                                                    --------->ORA47(2)                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->TGA1a                                                  <---------O2                                            --------->GLK1(1)                                         <------NtERF2<---------ATERF1(1)                                        --------->LBD16  <---------DEAR3(2)                                       <---------ANAC58 <---------ATERF1(2)                                       <---------ANAC58 --------->ATERF1(2)                                       <---------ANAC46<------NtERF2                                  ----------->RAV1(2)--------->RAP2.3(3)                                 -------->P---------->DOF2<---------MYB52(1)                                 ===========================MYC_MYB                                ------->GAMYB     --------->O2                                ============================MYC_MYB                               --------->MYB46(3) ==================MYC_MYB                               <---------MYB55(2) <---------ALFIN1                         --------->ANAC58                               <---------MYB111(2)--------->bZIP60(2)                      --------->ANAC58                               <---------MYB111(1)--------->ANAC58                <------ZmHOX2a(2)       <-----------GT1        ------>MYB83 =================bZIP_DOF              ------------>CBF   --------->ARR11(3)         ------>MYB46(1)--------->ANAC58                    <---------ARR11(3)   <---------GLK1(2)        --------->AtMYB61--------->ANAC58--------->MYB52(2)  --------->ARR11(3)--   attcagatttttcgttacaaaacgctgagaccaacaacctggcgggaaagccacgccgccggtaagttgtgaacggcgaagaagatcaatgctacgctct  1028300                           --------->GLK1(1)                      <-------TEIL                     --------->GLK1(2)                     --------->ARR14(1)                     --------->CCA1(2)                    <---------GLK1(2)                    --------->ARR14(2)                    --------->ARR11(1)                    <---------ARR14(2)                   <---------HSFC1(2)                   --------->HSFC1(2)                   <---------HSFB2a(1)              <---------HSFB2a(2)          <---------CCA1(2)           ------>NtERF2   <---------GLK1(1)   <----------DOF2    <----------DOF2--------->HSFB2a(1)   <---------ANAC58                             --------->ICU4  <---------DAG2  ----------->ARR10      <---------ANAC58   ---------->DOF2   <---------ZAT14 ------->ZAT6 --------->HSFB2a(2)       <-------TEIL      <---------YAB1 <---------YAB1--------->ATHB12   atcactctttctccgactagaagattcgggtttccaccgagatgcgtctcttttacgactatcaaagaattgattttgactgaagagaatgatgggtctt  1028400                                                         <---------GLK1(2)                                                --------->ANAC58                      ------->PIF5              --------->ANAC58                      <-------PIF5           <---------ZAT14                   <------------OsbHLH66     --------->ZAT18                --------->ANAC46           ------>NtERF2                     --------->ZAT14               <---------LBD16          --------->DEAR3(1)     ------>ZmHOX2a(1) ------->TEIL           --------->MYB52(1)       --------->ANAC46   <----------DOF2    <---------ZAT18     <---------TOE2(3)   <-----------GT1   ctctgcattacgccgcttcgagcccgtgctttctccttctaagtaagtgcacgaacattgattctctaaggcaatctcacggagttttaacgggaaatgg  1028500                           --------->ZAT2                           <---------ZAT2                             --------->ANAC58                      ------>NtERF2                                   --------->ANAC46                 <---------WOX13(1)                                   --------->ANAC58               --------->ATHB12                              ---------->DOF2          <---------ARR11(3)                            <---------ARR14(2) <------MYB46(1)   ------>ZmHOX2a(1)          --------->ARR11(3)    <---------MYB52(1)      <---------ZAT14    <------MYB83    ----------         <---------GLK1(1)------>MYB83               <---------ANAC46------->TEIL   <------ZmHOX2a(2)         --------->GLK1(1)------>MYB46(1)        <----------DOF2   <-------TEIL     ================HOX2a_HOX2a   actcatgggtgatatctcgattgccaccaagctcgttagtctatatggtttctttgggtatactaaagatgcacgcttggtgttcgatcaaattcctgaa  1028600               ---------->DOF2      <---------AHL20(2)      <---------------AGL15      --------------->AGL15     <---------YAB1     <-----------------AGL2                                                    --------->ATHB12  <---------RVE1(1)                                               --------->DAG2 <---------GLK1(2)                    <---------ANAC58           ---------->DOF2     <---------REM1(1) <---------ARR14(2)         <---------At4g35610      --------->ALFIN1         <---------AHL20(2) --------->ARR14(2)       <-----------RAV1(2)---------->DOF2  ----------->GT1 --------->AHL20(2) <---------ARR11(3)   --------->AtLEC2<---------ANAC46<---------ZAT14      --------->ATHB12 ->RAV1(2)  <---------TOE2(3)         <---------ANAC58--------->ZAT14     <---------YAB1   ccagatttttatttatggaaagtcatgctcagatgttattgcttgaataaagagagtgtagaagtcgtaaagttgtatgatttattgatgaagcatggat  1028700                                    <---------ANAC58                                 --------->ZAT2         --------->ARR11(3)         <---------ANAC58                                 <---------At4g35610         <---------ARR11(3)         <---------ANAC46 <------ZmHOX2a(1)               --------->At4g35610        --------->YAB1          ---------->DOF2   <-----------RAV1(2)                <---------ZAT2 -       <---------YAB1       <----------DOF2   <---------At4g35610           <-------TEIL           <-     --------->YAB1    ---------->DOF2        --------->At4g35610          --------->CCA1(2)    -----    <---------YAB1  <---------HSFB2a(2)--------->ZAT14                    --------->ARR14(2) --------  --------->CCA1(2) <---------HSFC1(1) <---------ZAT14                    <---------ARR11(3) <------- <---------ARR14(2) --------->HSFC1(1) --------->REM1(2)                  <---------ARR14(2) <------- --------->ARR14(2) --------->HSFB2a(2)--------->ZAT18     <<<<<<<<<<<<<<<<<LFY     ------>NtERF2 <--   tcagatatgatgatattgttttctcgaaagctttgaaagcgtgtactgagcttcaggatttagacaatgggaagaagatacattgccagctcgttaaggt  1028800  Previous    Next  AGI:  At2g03380.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65040.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1028289    to: 1030358    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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