Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------HSFB2a(2)                                                                              <---------ICU4                                                                              --------->ATHB51                                                                              --------->AHL20(2)                                                                              <---------AHL20(2)                                             <---------ARR11(3)              --------->ICU4       <---------AHL20(2)                    --------->ARR11(3)           --------->AHL20(1)      ---       --------->AHL20(2)             ----------->GT1                     --------->AHL20(2)     ----       --------->AHL20(1)            --------->DAG2            --------->ANAC46     --------->HSFB2a(2)      --------->AHL20(2) <---------------AGL15              <-------TEIL  <---------AHL20(2) -------- >ARR11(3) <-----------RAV1(1)      ---------->DOF2    ---------->DOF2   --------->AHL20(2)  <-------   gacaaaaaaaaaattgttgctaaaatgctaaatgttgaaaaagtaagtatcttagaacaaagtacatgtcatcaaattaattatttctaaaacttataaa  963800                                                                               ----------->GT1                                                                              <---------TOE2(3)                                                                          <---------------AGL15    <---------ARR11(3)                                                    <----------DOF2    --------->ARR11(3)                                                   <---------ANAC58   --------->RVE1(1)                                                     <---------ANAC58   --------->CCA1(1)                      <---------At4g35610    --------->AHL20(1)                -- --------->AHL20(2)               <-----------GT1                --------->AHL20(2)               --- ------>AHL20(2)               <---------ICU4                    <---------AHL20(1)             ----- ----->AHL20(2)            <---------AHL20(2)                    <---------AHL20(2)      ------>ZmHOX2a(1) ->AHL20(2)               --------->AHL20(2)                    --------->AHL20(2)  --------->GLK1(1) --YAB1           <-----------GT1 <---------AHL20(2)            <---------AHL20(2)  <---------GLK1(1)   taaaaaaatctcactatattatactatatttaatatttacattgagttgataagagataccaaaaattaaattttgcttttaggtgaaatcctatctata  963900                                                                   --------->AHL20(1)                                                                   --------->AHL20(2)                                                              <---------AHL20(2)                                                              --------->AHL20(2)                    <---------AHL20(2)                        <---------YAB1                    --------->AHL20(2)                       <---------AHL20(1)    <---------ANAC46                    <---------AHL20(1)                       --------->AHL20(2)  --------->ZAT14                    --------->AHL20(1)                       --------->AHL20(1)  <---------ZAT14                   --------->AHL20(2)                    <---------ICU4       <---------ANAC46               <---------AHL20(2)                        --------->YAB1      ------->MYC3      <---------AHL20(1)                                <---------ATHB12     <-------MYC3      --------->AHL20(1)<-----------GT1           <-----------ARR10<---------AHL20(2)  >>>>>>>>>GT-1--------->AHL20(2)                 <---------ARR11(3)         <-------MYC2 --------->GT1 <---------AHL20(1)                 --------->ARR11(3)         ------->MYC2 ------>ICU4   --------->AHL20(1)               <---------AHL20(2)--------->AHL20(2) ---->YAB1  --------->AHL20(2)--------->YAB1   --------->AHL20(2) <---------AHL20(2)            <----   atggttaatatttttaaaatattaaattacaatattagtataacttatataaaatctaatcaatataattttattagcatgtgtgtagtatatgtatggg  964000                                                                                                 ----                                                                                                <----                                               --------->ARR11(3)                              ------                                              <------ZmHOX2a(1)                              --------                                    --------->YAB1                                          <--------                                    <---------AHL20(2)                                      ---------                                    --------->AHL20(2)               ------>ZmHOX2a(1)   <---------TOE2(3)                                <---------AHL20(1)          <---------AHL20(2)          ---------->DOF2           --------->AHL20(2)   --------->AHL20(2)          --------->AHL20(2)         --------->AHL20(2)       ---------->DOF2          <---------AHL20(2)      <---------YAB1            ------>ZmHOX2a(1) <      <---------AHL20(2)        --------->AHL20(1) ----------->GT1  --------->TOE2(3)  <---------AHL20(2) -------HVH21           <---------MYB59     <---------TOE1(2)    <-----------GT1 --------->TOE2(3) --   tcaaatattaaaagaaaatataagagcctaacaattaattatatagtaggattttgttatatttatttttccttactatatttcctaaattaaagatttg  964100 ------>MYB46(1) ------>MYB83 ----->PCF2 -------GT1                                                                                --------->RVE1(1) ----->HVH21                                        --------->AHL20(2)                    <---------ARR11(3) ->CCA1(2)      <---------YAB1                      <---------AHL20(2)                    --------->ARR11(3) -ARR11(3)    --------->YAB1                       --------->AHL20(2)                  --------->AHL20(2) >ARR11(1)   <---------YAB1   --------->ICU4--------->REM1(1)                       <---------HSFB2a(2) ---------ALFIN1----------->TBP<---------ICU4 ------------>CBF                      --------->HSFB2a(2) ------->MYB46(3)  ---------->DOF2         <-------TEIL    ------------>CBF         --------->TOE2(3)   acccactctcaactcattataaaaagagagacattatttcatagcttcatcaattttattcaacaatttctctcatttcatttcttccataaaatctctc  964200                                                                                              -------                                                                                              -------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                          --------->MYB55(2)                                                                                          <---------MYB46(3)                                                                                          ------>NtERF2                                                                                         <---------DEAR3(1)                                                     --------->STY1(2)                --------->ALFIN1                                                     --------->ZAT2               <------ZmHOX2a(1)                                                     <---------STY1(2)    <---------TOE2(3)<------NtERF2            ----------->RAV1(1)                      <---------ZAT2     <---------TOE1(1)--------->ALFIN1           <----------ID1                      --------->WRKY38(1)   --------->TOE1(2)<---------DEAR3(1)           *TSS            <---------ARR11(3)  --------->WRKY45   ------->TEIL  <---------TOE2(3) ------------------------>ANAC81        <---------GLK1(2)      <---------YAB1--------->ALFIN1 -------   aaaaatcaacaaaacaacaaaacaaacaatgtcttcgaacaagattgtgttgactagctcggatgatgaatcgttcgaggttgaggaagcggtggctcgt  964300                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                          --------->RVE1(1)                                                                          --------->CCA1(1)                                            --------->ANAC58         --------->LBD16                                     <------NtERF2                 <---------LBD16                                    ------>NtERF2                  --------->At4g35610                                  <---------ABI4(2)            <-----------HVH21      <-----------HVH21           --------->ZAT18              <-----------TGA1 -->ANAC58                        <---------ZAT14----------------------->TaNAC69(2) ---->GT1                        <---------ATERF1(1)          --------->ANAC58 -ANAC58                  ----------->HVH21 --------->ANAC58  --------->bZIP60(2) -ANAC58                  ----------->TGA1 --------->DAG2     --------->ANAC46 -ANAC46               ------>ZmHOX2a(2)  ---------->DOF2     --------->ANAC58     <----------DOF2 -->ANAC58    <---------ZAT18   <---------DEAR3(1)           <-----------STF1  ------>ZmHOX2a(1)   aaattgaaggtcatagcacacatgatcgatgacgactgcgccgataaagcaatcccgcttgaaaacgtcaccggaaatatcctcgctttggttatcgagt  964400             ------->TEIL          --------->ANAC58          --------->ANAC58          --------->ANAC55(2)          <---------ANAC55(2)                           --------->ANAC58          --------->ANAC46                              --------->ANAC58                --------->ZAT2          --------->ANAC55(1)        <---------YAB1   --------->MYB46(3)                --------->At4g35610      --------->CCA1(2)              --------->ICU4   <---------MYB52(2)                <---------ZAT2   --------->ANAC58                --------->YAB1   ----------->RAV1(1)     --------->ANAC58   --------->ANAC58          --------->YAB1      --------->ANAC58           --------->ANAC58        -   --------->ANAC46         <---------YAB1       --------->ANAC58         <------ZmHOX2a(1)   <------ZmHOX2a(1)   attgcaagaaacacgtacttgatgatgttgatgatagtgatgattctactgaagcaacaagcgaaaatgtaaacgaggaagccaagaacgagctcaggac  964500                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                                <---------ARR11(3)                ---------->DOF2                                                 --------->AGP1              <---------YAB1                                                    --------->ARR11(3)           <-------TEIL                                            --------->TOE2(3)   --------->ANAC58                         ------->TEIL        <---------ICU4  --------->ARR14(3)   --------->ANAC58                      <---------YAB1    <---------MYB52(1)   <---------ARR14(3) ---------->HVH21    --------->GLK1(2) --------->YAB1     --------->At5g28300   <-----------ARR10   ttgggacgcagagttcatgaaagaatttgatatggaaacagtcatgaaactcattctcgctgttaattatctcaacgtccaagatcttcttggtctcact  964600                                  <-----------RAV1(2)                            <-----------RAV1(1)                            ==================RAV                          --------->CCA1(2)                         --------->ARR11(3)                                   --------->At4g35610                         --------->ARR11(1)   --------->HSFB2a(2)    --------->YAB1                         <---------ARR11(3)   --------->HSFC1(1)     <---------ICU4                 <---------ANAC55(2)     <---------HSFB2a(1)        --------->ICU4              ================================HOX2a_HOX2a      --------->YAB1 ----------->RAV1(2)              <------ZmHOX2a(2)  <------NtERF2<---------HSFC1(1)<---------TOE2(3)             <---------ARR11(3) ------>NtERF2 <---------HSFB2a(2)   <---------YAB1            --------->At4g35610<---------ETT(2)           <---------TOE2(3) --------->ANAC46            <---------At4g35610--------->ETT(2)       <----------DOF2--------->ATHB12>>>>>>>>>TBF1<--      <-------GAMYB  ---------->DOF2   <------ZmHOX2a(1)  <---------YAB1    <---------ALFIN1---------   tgccagaccgttgcagatcacatgaaagatatgtcgccagaggaagttcgagaactctttaacattgagaatgattacacacctgaagaagaagacgcga  964700  Previous    Next  AGI:  At2g03190.1    Description:  ASK16 (ARABIDOPSIS SKP1-LIKE 16); ubiquitin-protein ligase. similar to ASK15 (ARABIDOPSIS SKP1-LIKE 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G25650.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85603.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897); contains InterPro domain SKP1 component, dimerisation; (InterPro:IPR016072) Range:  from: 964211    to: 964898    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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