Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                            ---------                                                                                        --------->AHL20(1)  --------->AHL20(1)                                                 --------->CCA1(2)  <---------AHL20(2)  <---------AHL20(2)                      <---------HSFB2a(2)       --------->ARR11(3)  <---------AHL20(1) --------->AHL20(2)                       --------->HSFB2a(2)       <---------ARR11(3) <---------AHL20(2) <---------AHL20(2)                 <---------YAB1            <---------AHL20(2)       --------->AHL20(2) ---------AHL20(1)                 --------->ARR11(3)        --------->AHL20(2)------->TEIL --------- -------->AHL20(2)                 <---------ARR11(3)     <----------DOF2 --------->YAB1--------->AHL20(2) ---------AHL20(2)               <---------YAB1           <---------DAG2--------->ARR11(3)  <--------   aaattattttgtgtctattttcaaaaatttaagtcatgatatttgtagaaaactatacaactttttaatagatatatcatgaacttgaattaaatttttt  905200                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          --------->TOE2(3)                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         --------->At4g35610                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <---------ALFIN1xxxxxxxxxxxxxx                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      --------->MYB46(3)<xxxxxxxxxxxx                                                                     ------>MYB46(1)  <xxxxxxxxxxxxxx                                                                     -------->P<xxxxxxxxxxxxxxxxxxxxx                                                                     ------>MYB83xxxxxxxxxxxxxxxxxxxx                                                                    ------>ZmHOX2a(1)<xxxxxxxxxxxxxxx                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------ZmHOX2a(2)                          ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)< ---------ARR11(3)                 ----------->GT1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xx -------->ARR11(3)            ----------->GT1            <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >AHL20(1)                 ------------------------>ANAC81xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxx >AHL20(2)               ---------->DOF2---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxx -AHL20(2)        <---------YAB1 ---------->DOF2   ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   aagatcagataatatgagttacaattgaaaaggagtaaagaaaaaagaaagagaaaagagaatttctctcctaccacctatttctcttctcacctcaaca  905300              --------->TGA2(2)              <xxxxxxxxxxxxxxxxsmallRNA(s)             <-----------HVH21             <-----------TGA1            <---------ANAC55(2)            --------->ANAC55(1)            --------->ANAC58            --------->ANAC58            --------->ANAC46            --------->ANAC55(2)            --------->O2            <---------bZIP60(1)            <---------TGA1a            --------->bZIP60(1)            --------->bZIP60(2)            <---------O2            --------->TGA1a           <-----------STF1        <-----------HVH21       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      --------->DAG2     ---------->DOF2     =================bZIP_DOF  --------->YAB1   <---------ZAT18                                          <----------DOF2 <---------ATHB51<---------ZAT2                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ATHB12--------->ZAT2                           --------->ZAT6 XXXXXXXXXXXXXXXXXXXXX>MIR831 xxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(i2)  <---------ICU4       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(i2)   --------->YAB1      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxsmallRNA(i2)   <---------ATHB12     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(i2)     <---------YAB1       <xxxxxxxxxxxxxxxxsmallRNA(s)   <-----------GT1 xxxsmallRNA(si3)--------->At4g35610           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxx>smallRNA(le3)    --------->ICU4     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <-------- xxxxxxxxxxxsmallRNA(i2)  --------->YAB1      ------>NtERF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxsmallRNA(s)----------->GT1  --------->ZAT14       <-------- xsmallRNA(le3)<-----------bZIP910(2)        ----------->TGA1       <xxxxxxxxxxxxxxxxsmallRNA(i) xx>smallRNA(le3)<---------At4g35610         ----------->HVH21    xxxxxxxxxxxxxxxx>smallRNA(i)      < xxxxxxxxsmallRNA(s2) --------->ZAT6         --------->WRKY12xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->At4g35610   <xxxxxxxxxxxxxxxxsmallRNA(s)-------- xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <---------At4g35610  <------ZmHOX2a(1)     xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ----   ccaataataaagtcacgtcagctcacactaatcattctccttcttcgctgacgaagcgtaacaccaggacagtgatgtctttttactctccttgaaggtt  905400                                     --------->AHL20(2)                                     <---------ICU4                                     <---------AHL20(2)                               <-------GAMYB                              <---------MYB46(3)                              ----------->GT1                           <-------GAMYB                          --------->MYB111(2)                          --------->MYB55(2)                          --------->MYB46(2)                          --------->MYB111(1)                          --------->MYB52(2)                          <---------MYB46(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         --------->ANAC55(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->AtLEC2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            --------->ANAC55(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                             <---------ANAC55(2)         ---   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              --------->ANAC46       -------- -TOE2(3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR11(3)                ------>MYB83 -TOE1(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ZAT6    --------->ANAC58      ------>MYB46(1) -----------GT1 <---------AHL20(2)   --------->ATHB51     <---------ARR11(3)               <xxxxxxxxx xxxxxxxxxxxxxx>smallRNA(le3) <------MYB83----------->GT1<---------CCA1(2)           <---------ANAC55(2) --->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->DAG2       --------->ANAC58     ---------- xxxxxxx>smallRNA(si3)<---------ZAT6--------->ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  --------->MYB46(3) xxxxxxxxxxxxxx>smallRNA(i2)  <------MYB46(1)   ---------->DOF2  --------->ANAC46    --------->ANAC55(2) ----->MYB52(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->GT1<---------ATHB12 <---------LBD16   atttactacatttacaaatttatggtgttagttggttaattatttagtaaaaaagtgttatatctacaaatcacgcaaaactctattacggaccaacaaa  905500                                                                           --------->ANAC46          --------->ANAC58                 <------------CBF             --------->ANAC46         XXXXXXXXXXXXXXXXXXXX>MIR863-3P  <---------YAB1       <---------YAB1--------->LBD16        ---------->DOF2                 <---------GLK1(2)     <---------AHL20(2) <---------AHL20(2)                  <------------MYB.PH3(1) --------->AHL20(2)        xxxxxxxxxxxxxx -------->GT1                      --------->MYB52(1)        <---------AHL20(2)     --------->ARR14(2) ->MYB46(3)      <----------ID1   ----------->HVH21          <---------AHL20(1)     <---------ARR14(2) xxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC55(2)          --------->AHL20(1)     <---------GLK1(2) ->RAV1(1)--------->ANAC58      --------->ANAC55(2)         --------->YAB1<---------LBD16           -   tagtttatttgaaagcaaaaaaacaaaacttggtccgtaacggattattgtccgtcttagaaatataatggtctactccgcaaacagatttgtccgtctt  905600                                                                                                   --                  <---------At4g35610                                                            ----                  --------->At4g35610                                                           -----        <xxxxxxxxxxxxxxxxsmallRNA(s)                                       --------->ARR14(2)   <----     <------------CBF             --------->At4g35610                      <---------ARR14(2)   ----- xx>smallRNA(i)   *TSS        <-----------GT1 <---------MYB46(3)          <------ZmHOX2a(1)     <---- ---------->RAV1(1)  --------->MYB52(1)       <-----------RAV1(1)   ---------->DOF2          <-------   agcgacatattggtctagtctgcaaacggatttatccgctctgtctatttgttgcaaccttgtaagttttcaaagaggaaacacatatatatgttatgga  905700            <---------YAB1           <---------AHL20(1)           --------->AHL20(1)           <---------AHL20(2)          --------->YAB1         <---------YAB1    ----------->GT1 <---------MYB52(1) ------->MYB59                                                                                     <- ----->ARR14(1)     --------->LBD16                                                              <--- ---->ARR14(2)     --------->LBD16                                                          <-------- -----ARR14(2)    <---------LBD16                            <------------MYB.PH3(2)     <---------HSFB2a(2) ---->ARR11(1)   <---------LBD16                             <---------MYB59 ---------->DOF2--------- -----GLK1(2)   <-----------GT1                              <---------MYB52(2)          --------->HSFB2a(2) --TOE2(3)--------->AHL20(2)                              <---------ATHB12 <---------ATHB12 <--------   ttcggtatgttattatatttcccggttctatttctcaaacacactctctcgtcttctccaataactaacttctccaaatcaaagccttcttcgagatttt  905800                                                                                        <---------AHL20(2)                                    <---------ANAC58                                   --------->AHL20(2)                                    <---------ANAC46                                   <---------AHL20(1)      ------>ZmHOX2a(1)             <---------ANAC58                                   <---------AHL20(2) --------ZAT18                    <---------ANAC46                                  ------>MYB46(1) ------LBD16                   <----------DOF2                                      ------>MYB83 -GLK1(2)             <---------TOE2(2)                                           --------->TOE2(3) >ARR11(3)            <---------TOE1(2)                                           <---------MYB59 -ARR11(3)           <---------MYB52(1)                 <----------DOF2        --------->GLK1(1)   gcgcattcctcgttttctaattcgtaagtttctcttttgtgtgtgtttctaatcgaaacttttgtgtcaatttcaaatcggaaacctaattaatttgttc  905900                                                                                                  <--                                                                                                  ---                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              -------                                                                                             --------                                                                                           --------->MYB46(3)                                                                                          <---------At4g35610                                                                                          --------->At4g35610                                                                                          --------->ZAT2                                                                                        <------NtERF2                                                                                       --------->LBD16                                                                                       --------->At4g35610                                                                                      ----------->RAV1(1)                                                                                      --------->RAP2.6(2)                             --------->TOE1(3)                                        --------->ANAC46                             --------->TOE2(3)                                        --------->DEAR3(1)                            <---------ANAC55(2)                                       --------->RAP2.3(2)                            ----------->GT1                                          --------->RAP2.3(1)                            <---------ANAC46                                        <---------At4g35610                       <---------ICU4        <---------TOE2(3)                     --------->DEAR3(1)         ----------->GT1  <-----------GT1    <---------TOE1(3)        <---------YAB1--------->At4g35610   aattcgctgtgatgttaaaaacccctaattacgttaaatttggaattagggtttgtgtattagctctgtgttatcaatggagacacagccgcagcaacca  906000          <--------P         <---------MYB52(1)      <---------LBD16  ------>ZmHOX2a(1) <---------ALFIN1                                                                        --------->ANAC58 -------ALFIN1      <---------At4g35610                                                  --------->ANAC58 ------>AtMYB61     --------->At4g35610                                         <---------ANAC58 ->GAMYB--------->LBD16                                                         <---------ANAC58 --->AtMYB61--------->ZAT2                                <---------MYB46(3)   <---------ZAT2 ----ALFIN1 --------->At4g35610                  --------->ARR14(2)           --------->MYB52(2) ---MYB111(2)      --------->GLK1(2)             <---------ARR14(2)         <---------MYB52(1) ---MYB55(2)<---------ZAT2                       --------->GLK1(2)          --------->DOF5.7(2) -->MYB46(3)<---------At4g35610                 <---------GLK1(2)          <---------RAP2.6(3) >P  ------>ZmHOX2a(1)     ----------------->AGL1------->TEIL      --------->CCA1(2)   ---------->DOF2   cctcctcctccggtagctgagaagctgaatccaaaactggagaaggaactgaatctggagtcgttgaagacacgagccgttagcttggccaaagccattg  906100  Previous    Next  AGI:  At2g03070.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO41701.1) Range:  from: 905618    to: 909069    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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