Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------->GAMYB                                                                              ----------->RAV1(1)                                                  --------->ANAC46 --------->ANAC46                                     --------->WOX13(1)            --------->ANAC58                                    <---------AHL20(2)      <------ZmHOX2a(2) --------->MYB52(1)      --------->YAB1                --------->AHL20(2)    --------->At4g35610--------->ANAC46   <---------GLK1(1)               <---------ATHB12     --------->YAB1     --------->ANAC46       <-- >ZmHOX2a(1)                --------->At4g35610 ----------->RAV1(1)--------->ANAC58        --------->YAB1   tcttgaaatcagagttcaagtatgtataccatctgcaataaatcaaaaacccacataatcagatcaaacacacaaaaacacaacagaaaacaatcgtctt  806700                  ------>MYB83                  ------>MYB46(1)                                                         ------->GAMYB                <---------MYB59                                                           --------->AtMYB61          --------->ANAC46          <---------ANAC46                                      --------->TOE2(3)         <---------TOE2(3)          <---------ANAC58                                     --------->MYB46(3)        --------->MYB52(1)    <---------ALFIN1    --------->TOE2(3)    ------>ZmHOX2a(2) <---------MYB55(2)        <-----------GT1      --------->ZAT14     --------->YAB1     <---------ICU4      -------->P   --------->AHL20(2)        <---------ZAT14     <--------HAHB4     --------->ATHB12    ------>MYB46(1)   <---------AHL20(2)        <---------REM1(2)  <---------YAB1      --------->YAB1      ------>MYB83  --------->AHL20(2)--------->HSFB2a(1)  <---------ZAT18           <---------ATHB12   --------->AtMYB61 -------ARR11(3)--------->AtMYB61   <---------ANAC58               --------->ICU4    --------->MYB46(3)   gatatttaattaacgaaaccaaaccttcttctacactgccttgtgctcttatcattaaacttggatgcaatgatcgcccaactaaaaaccaaccacaaca  806800                                      ------>MYB83                                      -------->P                                      ------>MYB46(1)                                    --------->MYB46(3)                                    <---------MYB111(1)                                    ------->GAMYB                                    --------->AtMYB61                                   <---------MYB55(2)                                   --------->MYB46(3)                                   <---------MYB52(2)                                           <----                                  --------->ANAC58                                          ---------                                  -------->P                                                <--------                   <----------DOF2--------->ANAC58                --------->GLK1(1)   <----------DOF2             --------->YAB1      --------->WOX13(1)            --------->LBD16        <---------DAG2     ----------->RAV1(1)  --------->YAB1------->GAMYB  --------->YAB1            <---------MYB52(2)   agaacaacaacaaaatcaaaacttttcatcaaaatcaaccaacccaatagaacagaaacataacccagaaatcgaaattgaaaactaacttttcagttcc  806900                                         --------->TOE2(3)        <---------ICU4                                       <---------ARR11(3)        <---------YAB1      --------->ATHB12                 --------->GLK1(2)        --------->TOE2(3)                 <-- --------->ZAT14                       --------->ARR11(3)      --------->YAB1                    ---- <---------ZAT14 ------>ZmHOX2a(1)--------->LBD16              <---------ICU4                  ------ -----ANAC46    --------->TOE2(3) ------>ZmHOX2a(1)           <---------ATHB12               -------- >At4g35610 <---------ANAC58    ----------->RAV1(2)         --------->WOX13(1)        <---------WOX13(1) -At4g35610 <---------ANAC58   ------>ZmHOX2a(1)       <-------TEIL           --------->MYB52(1)<----   ctgtaaactgatttgcttccttagtatatcatcctcctgaaaatctcaaaacagagattcatcaatcatcaatactaaaaaaacagagattgatcaatat  807000                                                                                         <---------HSFB2a(1)                                                                                         <---------HSFC1(2)                                                                                         --------->HSFC1(2)                                          <-----------GT1                               <-----------ARR10                                        <---------MYB52(2)                              --------->GLK1(2)                                       --------->ANAC46                                 <---------ARR14(2)                                       --------->ANAC58                                 <---------ARR11(3)                                       ----------->GT1                   --------->At4g35610   <<<<<< -------AHL20(2)                       --------->ANAC58                --------->YAB1   --------->ARR11(3) ----->AHL20(2)                 <------ZmHOX2a(1)                      --------->ATHB12<---------GLK1(2) --->AHL20(2)                  --------->At4g35610                    <---------HSFB2a(1)--------->HSFB2a(1) ->ICU4 <------ZmHOX2a(1)      <---------At4g35610                    <---------HSFC1(2)--------->ARR14(2) -----YAB1                   <-----------RAV1(2)          ------>ZmHOX2a(1)         >>>>>>>>>TBF1 <<<   tatatagagaggagagaagagaagagagacctcaggagaccaagtaacaatatgacgctccttcttcttggaatcatcggaatgaagaagaatcttcttc  807100                                                                                   <---------AHL20(2)                                                                             ----------->GT1                                                                         <---------TGA1a            -       <-----------RAV1(1)                        =================================bZIP_DOF        <- <<<<<<<<<TBF1                                    <----------DOF2        ===========================bZIP_DOF <<<TBF1            --------->MYB52(2)         ---------->ID1            --------->TGA1a <----------DOF2 <<<<<<TBF1     <---------At4g35610--------->AHL20(2)         ----------->HVH21    --------->AHL20(2)   ttcttcttcatgttgttctgcttagttgtctcttccattaaaaagttttggcctttctctctctctgacgctctctcgtctgtaaaaaattctttagtct  807200           <---------At4g35610       <---------YAB1                                             <----  <---------MYB52(1)                 ----------->TBP                ----------->RAV1(1)         <----  --------->DOF5.7(2)              --------->YAB1                ================================HOX2a_HOX2a --------->TOE2(3)                <---------YAB1                 --------->PCF2              <------- ---------->GT1               <----------DOF2                    <------ZmHOX2a(2)        ------>ZmHOX2a(1) --------ATHB12         ------>ZmHOX2a(1)               --------->ZAT6 ---------->DOF2<---------ALFIN1   aatcgttaattttagcttcgacgctccttctcctttattataaaaaacccaaaaactatctctatcgatcccacaaagaagagagacccctcctcacact  807300                                                                                       --------->MYB52(2)                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                                --------->GLK1(1)                                                                                <---------GLK1(1)                                                                               <---------ARR11(3)                          --------->YAB1     --------->LBD16                   --------->ARR14(2)                         --------->AHL20(2) <---------HSFC1(1)                 --------->ARR11(3)                     --------->AHL20(2)     --------->HSFC1(1)                 <---------AGP1                     <---------AHL20(2)     --------->HSFB2a(2)                <---------ARR14(2)                    --------->AHL20(2)      <---------HSFB2a(2)               <------ZmHOX2a(1) -----DAG2  <---------HSFB2a(2)            <---------LBD16                ---------->DOF2 ------DOF2 --------->LBD16           <----------DOF2                  --------->TOE1(3) --ALFIN1   --------->HSFB2a(2)       <---------DAG2   ---------->DOF2 --------->TOE2(3)    <--------   ttttttctcttatccgagaaaattaaaataaaaatccaaactttttccagaaaactaaaaagaaatcaaaaacccttaaaggatctcgttttttgcatca  807400                                                          ---------->DOF2                                                       --------->At5g28300 <---------YAB1                    <-----------TBP      <---------RAP2.6(2)    ---------->DOF2      ---------->DOF2             <---------At4g35610     <------------CBF ----------->GT1  --------->GLK1(1)         ---- -AtLEC2<---------GLK1(2)       <------------CBF   --------->MYB52(1)  <---------GLK1(1)        -----   ctaatcggcaaattcttctgagttttataagagagattgaattgcgactgagaaaacggtaaaagggaaagagatttcttatagatagaaagaaaacaaa  807500               --------------->AGL15               <---------------AGL15              ----------------->AG              =======================================================================================              ----------------->AGL3              ----------------->AGL1              ----------------->AGL2                                                          -------      <---------CCA1(1)                                                                       -------      <---------RVE1(1)                                                            <---------ANAC58     --------->ARR11(3)                                                            <---------ANAC58     <---------ARR11(3)                                           <-------TEIL     <---------ANAC46   <---------TOE2(3)----------->GT1                         <-----------GT1   <------MYB83    <------ ----->DAG2  ----------------->AGL1                   --------->ICU4          <------MYB46(1) <------ ----->DOF2<-----------GT1    <---------TOE2(3)       <---------YAB1    ------->TEIL    ---------->DOF2   aagttgagattttttacccaaatagagaaattagggattttgtttttgagtttgtgttgattaaacgattcatgaacatttggtttcgtttaaagaaact  807600  Previous    Next  AGI:  At2g02820.1    Description:  MYB88 (myb domain protein 88); DNA binding / transcription factor. similar to FLP (FOUR LIPS), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G14350.1); similar to FLP (FOUR LIPS) [Arabidopsis thaliana] (TAIR:AT1G14350.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48427.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 804889    to: 807138    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version