Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                               --------->ANAC46                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                              <xxxxxxxxxxxxxxxxsmallRNA(i)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxsmallRNA(s)                             --------->AtMYB61                            --------->MYB46(3)                    <---------AGP1                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------STY1(1)                <---------ANAC58                 --------->STY1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxsmallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(i)       <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ANAC58     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC55(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)    <-----------HVH21                       <       --------->ANAC58     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 xxx       --------->ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <---------ALFIN1     <xxxxxxxxxxxxxxxxsmallRNA(i)   ----------->GT1         <-----------TGA1             xxxxxxxxxxxx     xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   xxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->MYB46(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------At4g35610    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->At4g35610 -ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->MYB52(1)   gactgaagcccgtaatcccctaggtctgaaaccacagcatgtaatattagtttcgtctcaagcgtcactcgaatttcgccaattgagctaacaacacttg  762600                                                <---------MYB52(1)             <-----------GT1                   --------->LBD16            <---------CCA1(2)                 <---------ANAC46       <---------TOE1(2)                      <---------ANAC58       <---------TOE2(2)                      --------->ANAC55(2)     --------->TOE2(2)                        <---------ANAC55(2)    --------->YAB1                            <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ICU4 xxxxxxxxxxxxxxxxsmallRNA(i)            <---------YAB1                                          <---- xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <-----------GT1         <----------DOF2                ------- xxxxxxxxxxx>smallRNA(si3)            --------->YAB1     --------->ATHB12                    <------- xxxxxxxxxx>smallRNA(si3)          --------->YAB1       <---------YAB1            <----------DOF2   gtggaatcatacgtttatctgtttatattttcaacaaaaattatcattccgtaatcttatgatttctttgtaagtgcaagtggtctttgaagtttttgat  762700                                                                --------->WOX13(1)                         --------->ATHB12                 ------>ZmHOX2a(1)                   --------->ANAC58                      --------->TOE2(2)           <----------DOF2                               --------->TOE2(3)        --------->ANAC58    <-----------RAV1(1) --------->ICU4                  --------->YAB1    --------->YAB1 -----WOX13(1)     --------->ANAC58                 <---------ICU4        --------->AHL20(2) -->ATHB12<---------ANAC58        --------->ANAC55(2)--------->WOX13(1)--------->YAB1 --YAB1   <---------ANAC58      <-----------GT1    <---------ATHB12--------->YAB1 --------->ANAC58---   tgaattttgttggcttttagtaagaaatgatttgttactgaattcattttgtaatcaatcctaagttaatcaaaaattataaacaagaaaacccaaataa  762800                                                                                               <-----                                                   <------ZmHOX2a(1)                         --------                                                  <----------ID1                            <--------                                                <---------------AtSPL8                    -----------                                          --------->ANAC46                               <-----------                                  <---------AHL20(2)                               --------->ANAC58                <----------ID1    --------->AHL20(1)                               --------->ANAC58        --------->MYB59           --------->ARR11(3)                               --------->ANAC46        <---------TOE2(3)         --------->AHL20(2)                             ----------->RAV1(1)        <---------TOE1(3)         <---------AHL20(1)                    --------->YAB1   <-----------    <---------ICU4        --------->MYB52(1)---------->DOF2             --------->AHL20(2)<----------   --------->ICU4      --------->YAB1    --------->LBD16      ---------->DOF2    --------->AtMYB61 -------->GT1 ---------->DOF2     <---------ARR11(3)      ---------->DOF2     <-----------GT1--------   gagtaatatttaggtttaaagacaaaaataactgaatatattccacaaaagaaggacaaacaaagaaagaacaataaaaaaaaccacacaaactataatt  762900                                               <--------ATHB1                                               <--------HAHB4                                               -------->HAHB4                                               --------->ATHB51                                              <---------ATHB51                                              --------->ICU4                                              <---------ATHB12        ---------->DOF2                       <---------YAB1 ----WOX13(1)                       --------->YAB1<-----------GT1 ->ATHB12            <---------RVE1(1)        --------->AHL20(2) -YAB1<------ZmHOX2a(1)        <---------ATHB12<---------ICU4           ------>ZmHOX2a(1) ---->AGL15          <---------CCA1(1)      ------>MYB46(1)        XXXXXXXXXXXXXXXXXXXX>MIR776 ------AGL3         --------->ARR11(3)      ------>MYB83       --------->TOE1(3) ------AGL2         <---------ARR11(3)    <---------MYB59<---------MYB52(1) -----AGL15  --------->MYB52(1)------------>CBF--------->YAB1  --------->TOE2(3)            <-------- ->ATHB51--------->DAG2  <-----------GT1  --------->TOE2(3)   ----------->GT1       <----------DOF2   ggtttacaggaaaagtaacagagatatttacaaatcaatggtaacctaataattactctgttaatcgttaaatcctccattaatgtctttcattttccct  763000                                                                           <---------DAG2                                                                <---------RAP2.6(3)                           --------->ANAC58                     ------>NtERF2            <---------ANAC58       <---------ARR14(2)          <---------ETT(1)            <---------ANAC46       --------->ARR14(2)          ----------->HVH21            <---------ANAC58       ------->TEIL                --------->DEAR3(1)          *TSS           ---------->DOF2                ----------->RAV1(2)<----------DOF2  <----------DOF2      <---------TOE2(3)<---------GLK1(2)     --------->DEAR3(2) ---GT1  <---------ARR11(3)--------->ANAC58<-----------GT1    --------->ATERF1(1)   ctctctttcaagttccttgttatttaagaaagccatgaatccgattatctatttctaaccctgggccgaccagaaaactttttggacgacccaaacttca  763100                                                      <---------ALFIN1                                             <---------ARR11(3)                     --------->At4g35610                    --------->LBD16          --------->GLK1(2)                      <---------At4g35610            <-------TEIL---------->DOF2      --------->ARR11(3)            <---------ARR14(2)        <---------AHL20(1)               --------->YAB1   <---------At4g35610       <---------ZAT2        --------->AHL20(2)              --------->AHL20(2)--------->At4g35610       --------->ZAT2        <---------AHL20(2)    <-------TEIL  --------->RVE1(1)              --------->ARR14(2)        --------->AHL20(1)   --------->CCA1(2)--------->RVE1(1)       ----------->GT1       --------->AHL20(2) <---------------AtSPL8     --------->MYB46(3)    --------->GLK1(2)      <--    <---------YAB1<---------LBD16   --------->AHL20(2)--------->AtMYB61    ------->TEIL<-------TEIL <   agggttctaataaattcatcaccggaaaaagatacatataaaataaaaatctctcaccactgctgattcaaatggtgaatcttgggagctacgttttcgt  763200                                                                                      ------>MYB46(1)                                                      --------->ARR14(2)              ------>MYB83                                                --------->DEAR3(1)                   --------->MYB52(1)                                             <---------O2                           --------->AtMYB61                                             --------->ANAC46                      --------->MYB46(3)                                             --------->TGA1a                       <---------MYB55(2)                                 <---------DEAR3(2)   <---------ARR14(2)           <---------MYB52(2)                        <---------MYB46(3)   --------->O2                    <-----------HVH21                        --------->MYB55(2)   <---------ALFIN1              <------NtERF2      <------     <---------ANAC46  <---------AtMYB61   <---------ALFIN1            --------->ANAC58       <------  ---------->ID1<---------At5g28300    --------->ANAC58     <---------YAB1 --------->At4g35610<------ --------DOF2 ----------->HVH21  <---------MYB46(3)--------->DEAR3(1)  --------->ANAC58--------->ANAC58 -----------RAV1(1) --------->ALFIN1   --------->ANAC58  <---------YAB1--------->ANAC46--------->ANAC58   ctttgtcgcgttgtctctcaccgtggtggttccatcggttcaagcccacatcgccgaatatgatgaatactggacgcagcgtcaaaccaacgcattgcga  763300                                             <---------DAG2                                             <----------DOF2                                     --------->ANAC58                                     --------->ANAC58                                     --------->ANAC55(2)                                     <---------ANAC55(2)          <---------ANAC46                                 <-----------HVH21           <------NtERF2                                 <-----------TGA1           <---------RAP2.6(3)                                --------->ANAC58            ------>NtERF2       <---------GLK1(2)        --------->ANAC58    -------->P<----------DOF2 ---ANAC46                --------->LBD16 <---------ALFIN1 --------->RAP2.6(2)               <------- ---ANAC58            ------->TEIL --------->MYB52(1)      --------->DEAR3(1)                <------- ---ANAC58    ----------->HVH21 --------->ANAC46  --------->MYB46(3)               <-----------GT1   gaaactttggaatcttatgacccgaacccagagaacgtcacggaccactttaactaccatgccgccttgtgggttctctaaaatttaacctagttagggt  763400                             --------->LBD16                            <---------HSFB2a(2)                   ------>MYB83 --------->ANAC58                                           --------->ANAC58                   ------>MYB46(1)      <---------TOE2(3)                                <---------DOF5.7(2) --------->ATHB12<---------MYB59--------->ANAC58        <----------DOF2    ----------->HVH21 --TOE2(3) --------->YAB1   --------->HSFB2a(2)<---------ANAC58            --------->ANAC58--------->ANAC46 --TOE1(3)<---------YAB1   <---------LBD16     <---------ANAC58            --------->ANAC58--------->ANAC58   ttttgatttgttatcaaaacctaacttcttccggaagaaactaatgttttcttgttttctttctcagagctatggagacgacagggatagtaaacgaaac  763500  Previous    Next  AGI:  At2g02720.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 6 precursor [Arabidopsis Thaliana] (GB:O64510); similar to AT59 (Arabidopsis homolog of tomato LAT59), lyase/ pectate lyase [Arabidopsis thaliana] (TAIR:AT1G14420.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79927.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectate lyase, N-terminal; (InterPro:IPR007524); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 763010    to: 765026    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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