Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <------ZmHOX2a(2)                                                                                    --------->ARR14(2)                                                           <---------At4g35610    --------->ABI4(2)                                                 <---------MYB46(3)               <---------MYB46(3)                                                 <---------DEAR3(2)         --------->MYB52(1)                                                <---------DEAR3(1)          -------->P------>ZmHOX2a(2)                                              --------->MYB52(1)        <---------AGP1--------->MYB46(3)                                             --------->ANAC46           <---------ARR11(3)          <                --------->At4g35610          --------->DEAR3(1)         <---------ARR14(2)         --                <---------At4g35610          ------->GAMYB --------->At4g35610  <---------MYB52(1) --                --------->ZAT2              <------------AtMYB77============================HOX2a_HOX2a                <---------HSFB2a(1)         --------->DEAR3(2)  =================HOX2a_HOX2a       --                --------->HSFB2a(1)    --------->TOE1(3)   --------->ZAT2   =========================                --------->HSFC1(2)     --------->TOE2(3)   <---------ZAT2 ------>ZmHOX2a(2)   <------                <---------HSFC1(2)--------->KAN4(2) --------->SPL7  <---------LBD16 <---------ARR14(2)             <---------At4g35610 ------>ZmHOX2a(2) --------->ARR14(2)   --------->ARR14(2)   <-------TEIL    <-----------GT1     <---------ALFIN1    --------->MYB46(3)  ------>ZmHOX2a(1)--------->ALFIN1 <-- -------->TOE2(3)     ----------->RAV1(1)  <---------At5g28300  =============================HOX2a_HOX2a   cacattaaacctcttagcagcttccaacacattgatcgttcccttaaccgccggttcgaccagctccttctctggatctaccggtggatccaacgtacaa  632200              --------->ZAT6              <---------ALFIN1              <---------HSFB2a(1)         --------->ALFIN1        <-------MYC3        <-------MYC4        ------->MYC4        ------->PIF5        ------->MYC3        <-------MYC2        ------->MYC2        <-------PIF5       <<<<<<<<<<HY5       <---------ANAC46       --------->PIF3(3)       <---------O2       --------->O2                                                             ------>ZmHOX2a(2)       <---------TGA1a                                                        --------->AGP1       --------->TGA1a                                                        <---------ARR14(2)       <---------PIF3(3)                                                      <---------AGP1      ------>NtERF2                                                           --------->ARR14(2)     <---------ALFIN1                                                         --------->ARR14(3)    ---------------->PIF3(2)                                                  <---------ARR11(3)   ------>NtERF2                                                              <---------ARR14(3)   <-----------------PIF3(1)                                                  --------->ARR11(3)  --------->ANAC58                                                        ---------->DOF2  --------->ANAC46                                                   --------->At4g35610  --------->ANAC58                                                 ------>ZmHOX2a(2)  --------->bZIP60(1)                                             --------->ARR14(1)                <  <---------TGA2(1)                                               --------->CCA1(2)                --  --------->TGA2(1)                                               <------ZmHOX2a(2)                <-  <---------bZIP60(1)       --------->WOX13(1)                   --------->ARR14(2)               <-- ---------ATERF1(1)   <---------ALFIN1                           <---------ARR14(2)              ---- --------->HVH21     --------->LBD16                             --------->ARR11(3)         --------- --------->TGA1     --------->ANAC58                             --------->AGP1<------ZmHOX2a(2) <--- ------->ALFIN1     --------->ANAC58                             <---------ARR11(3)        <---------GLK1(2) ================MYC_MYB   <-------TEIL                         <---------GLK1(1)   <---------ARR11(3) ---TOE2(1)   --------->HSFB2a(1)      <---------LBD16          --------->GLK1(1)   --------->ARR11(3) ---------HVH21    <---------LBD16   <---------AGP1<---------At4g35610 <----------DOF2------>ZmHOX2a(2)   ggtgacgccacgtggaacactcccgcacatccatcaatagctctggagattgcatcagagtctaagagatccgcttcaaagatcttgatcttagaatcgg  632300            <---------At4g35610          <---------HSFB2a(2)      <-------GAMYB     --------->MYB55(2)     --------->MYB52(2)                                                       <---------TOE2(3)     <---------MYB46(3)             ----------->GT1                          <-----------GT1     --------->MYB111(1)          ------>ZmHOX2a(1)                          <---------DOF5.7(2)     --------->MYB111(2)          --------->LBD16                            --------->MYB52(1)     -     --------->MYB46(2)          <---------LBD16                           <---------MYB52(2)     ---    <--------P                   --------->TOE1(2)             <---------ARR11(3)                ----   <---------MYB52(1)           ------>ZmHOX2a(2)              <---------ARR14(2)                <--- --------->LBD16               <------ZmHOX2a(2)               <-----------GT1<---------TOE1(3)  ---- ---------ANAC46              --------->ARR11(3)               --------->ARR14(2)               ----- ---->ZmHOX2a(2)              <---------ARR14(2)              <---------GLK1(1)                 ----- --------LBD16              <---------DEAR3(2)                <---------CCA1(2)                 ----- ----ZmHOX2a(2)            --------->ETT(1)                   --------->GLK1(1) <---------SPL7  <---- ----->ARR14(2)          <-----------HVH21      <---------ANAC58   <----------DOF2<-------TEIL  <---- >GLK1(2) --------->HSFB2a(2) --------->ARR14(2)<---------ANAC58   ================================== ------ARR14(2)        <---------DEAR3(2)       <---------ANAC46   ------>ZmHOX2a(1)  <---------GLK1(2)   atccgggtagttgcagaagatgagtcgggtcggatcctgggtaaatcgaagcgtggattttagtatatcctttctcaattaacgttcggattatccaaga  632400             --------->At4g35610 -------->At4g35610 --->ZmHOX2a(2) ----->ARR14(1) ---ZmHOX2a(2)             <---------ALFIN1 ----->CCA1(2)           --------->ANAC46 ---->AGP1<---------MYB52(1) ---->ARR14(2)      --------->ARR14(2) ---->ARR11(3)      <---------ARR14(2) -----ARR11(3)     <-----------HVH21 -----ARR14(2)    --------->LBD16                                         <---------AHL20(2)        < ===HOX2a_HOX2a <---------LBD16     <----------DOF2    ---------->DOF2 --------->GLK1(2)      -------   tccgatgaaaccattagctccggttacacacactgtctctttcgccattgttgatcaataagcgctcactgagaatttttttgttctctctctctatcgc  632500                                                   <----------DOF2                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                               <---------ARR11(3)                                               <---------ARR14(2)   <---------ANAC55(2)                                          ---------->DOF2           --------->ANAC55(1)                                    ----------->GT1------>ZmHOX2a(1)--------->ANAC46                                   <---------HSFB2a(2)              --------->ANAC58               ----------->GT1     --------->HSFB2a(2) ---------->ID1     *TSS             --------->CCA1(2) <----------DOF2 --------->ARR11(3)   --------->ANAC55(2)          ---- ---------AHL20(2)          --------->ARR11(3) --------->ARR14(2)   ----------->GT1<---------AHL20(2) -->YAB1<---------At4g35610 <---------ARR11(3)<------ZmHOX2a(1)     --------->ANAC58    <-----------GT1   aatttatctcagaagataagaaaaaaaaaacatctttccagtaaaaaaggatcctttgtttttttcttacacgtaaaaaatggatttttttttctctctt  632600                                       *TSS<-----------GT1         <---------ANAC46             --------->ARR11(3)         <---------ANAC58      --------->WRKY12         <---------ANAC58     --------->DOF5.7(2)                                   <-----------GT1  --------->CCA1(2)          --------->TOE1(3)                          --------->DAG2 --------->ARR11(3)         <---------ANAC46                           ---------->DOF2 <---------ARR11(3)       --------->MYB52(1)                       <---------------AGL15 ------>DOF2       ---------->DOF2    <---------ARR11(3)      <----------DOF2    <---------KAN4(2)   aaagatataatgcgttgatacaaaagcgtaacgttgacatgatattatccactagttttatagacttttcaaaaaaaggagagaattttcaattcttcag  632700                                <------NtERF2                               <------NtERF2                               ------>NtERF2                               <---------At4g35610                               --------->LBD16                               --------->At4g35610                              ----------->RAV1(1)                              --------->RRTF1(2)                              --------->DEAR3(1)                              --------->RAP2.3(2)                             --------->RAP2.6(1)                             <------NtERF2                             --------->RRTF1(1)                             --------->ATERF1(1)                             --------->RAP2.3(1)                            ------>NtERF2                            <---------ATERF1(1)                            --------->ABI4(1)                           --------->RRTF1(3)                           --------->DEAR3(1)                           --------->RRTF1(2)                           <---------ATERF1(2)                           --------->ATERF1(2)                           <---------ALFIN1                           --------->RAP2.3(2)                           <---------DEAR3(1)                           --------->RAP2.3(3)                          --------->DEAR4(2)                          --------->RAP2.6(1)                          --------->ORA47(2)                          --------->ERF1                          --------->ATERF1(1)                          --------->RAP2.3(1)                       <----------DOF2                          <------NtERF2                             --------->TOE2(3)                          --------->RRTF1(1)                        <---------------AGL15                         <---------ATERF1(1)               --------->LBD16                         <---------RAP2.3(1)              --------->ANAC46                         <---------DEAR4(2)             ------>ZmHOX2a(1)                        <---------DEAR3(1)             <---------ALFIN1                       <---------ABI4(2)             ------>ZmHOX2a(1)                     <------NtERF2             ------>ZmHOX2a(1)--------->ARR14(2)                     --------->ATERF1(1)   <---------ARR14(2)   <---------ARR14(2)                    --------->LBD16        --------->ARR14(2)<---------ANAC46                   --------->DEAR3(1)    <---------MYB46(3)------>NtERF2                  <---------LBD16       <---------AtMYB61 --------->DEAR3(1)                --------->DEAR3(1)      --------->ALFIN1<---------ATERF1(1)                      <---   tagtcaaatagatgaagaccgccggagcgccgccgcagagaggtggttcctcttcctcctccgccgtatactttaactggtcttcatcatcttgttctta  632800                                     --------->ANAC58                      <---------ALFIN1                  <---------MYB46(3) --------->ANAC58               <---------TOE1(3)             <--  <---------At4g35610               --------->DAG2                  <---------TOE2(3)       <--------  --------->At4g35610              ---------->DOF2             <----------DOF2        ------->TEIL<-- ------YAB1   <---------AtMYB61 <------ZmHOX2a(1)    --------->WOX13(1) <-------TEIL<-------TEIL-----   cgatagctgtagagttttggtggtgaagatgggaggaaaaagcaagaagcctcatcaatcttcttcttttaaggtccacacatagatgcacatttatgta  632900        <----------DOF2     <---------------AGL15                                                                   --------     --------------->AGL15                                                                   -------- -------TOE2(3)            <----------DOF2                <---------ANAC46                  <-------TEIL -TOE2(3)              <XXXXXXXXXXXXXXXXXXXXMIR159B       --------->ALFIN1          <---------ICU4 -------TOE1(3)    ---------->DOF2                <---------ARR14(2)                --------->YAB1 ----->DOF2--------->HSFB2a(2)                    --------->ARR14(2)             --------->WOX13(1)   aaggtttcttctttgagaactaaaagtctctttttaatccaaaatagttgagaattcgaagcgggggtttgtgatcaactaatccatcataacattcatt  633000                                                                              <---------ICU4                                                                              --------->ATHB12                                                                              --------->ATHB51                     <---------GLK1(1)                                        <--------ATHB1                    <---------ARR14(2)                                       <---------AHL20(2) ->YAB1 <---------GLK1(2)      <----------DOF2  --------->YAB1               <---------ATHB51 ->ATHB12           --------->ARR14(2)         <---------YAB1   --------->ATHB12    <---------GLK1(1)   gttttgaattgattctgaaatggatttgccagtcttttcttcttggtttatgatcaattggtttactgatttgaattgaataattgaattctgaaattct  633100  Previous    Next  AGI:  At2g02400.1    Description:  cinnamoyl-CoA reductase family. similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT5G58490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46939.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 631235    to: 632574    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g02410.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO46936.1); contains InterPro domain Protein of unknown function DUF901 (InterPro:IPR010298) Range:  from: 632639    to: 634898    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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